BBOV_II000870 | ATP-dependent metalloprotease FtsH family protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_II000870mTP0.1816410.0002890.818070CS pos: 44-45. RRY-IK. Pr: 0.3828
No Results

  • Fasta :-

    >BBOV_II000870 MLIALTSGVRPIRFVWATTRSNDRILWQSSAWFSTHRLFRIRRYIKEELDKGSLNENTLR EANRIDPRLTVNAVEAHYPDGFPKSEGILREYLKALMLTNRFDSRSLKPLIIPKYMSNVA VSKGLPHPRTNQIDHYGDTQASSNKYDESSEPNGLNSLGNGKLYVNSDPKNPVHVVVTPA ASSKFMRFFKGLLSFGSIAFCFGSLYLLLNQNLQRGLKHSFKVVDPEDVDTTFADVKGCD EVKRELDDVVDYLKNPEKFERLGAKLPKGILLSGPPGTGKTLLARAIAGEAGVPFIQASG SEFEEMFVGVGARRIRELFALARTMTPCIVFIDELDALGSKRSSTDHNSVRMTLNQLLVE LDGFSKREGVVVLCATNFPESLDPALVRPGRLDRTIHIPLPDYNGRYDILKLYSKKILVS PDVDLATIAKRTVGMTGADIFNILNMAALKCSIQGLASVTPSAIEEAFDRVVVGLKGKPL TNERERKATAYHEGGHTLVSIHTPGATQVHKATIAPRGRTLGVTWKIPEEKSDTRMSELH AEIAVLMGGMAAEEVIYGKENVSTGCQSDLEKAADIARTMVMNFGVGMDDVSGPMFLDHK DYAKLSEEHRKRVDTAVQKILNAGYRQASSVIRGNLVQLHNLSDALVQYETLSADEIKHA IRGEMKDIEQIRQAQLSEIRAQNKRYSHSQHGNNDLLPETQHSYRT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II000870.fa Sequence name : BBOV_II000870 Sequence length : 706 VALUES OF COMPUTED PARAMETERS Coef20 : 5.072 CoefTot : 1.012 ChDiff : 6 ZoneTo : 46 KR : 9 DE : 1 CleavSite : 34 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.053 1.865 0.413 0.711 MesoH : -0.391 0.558 -0.265 0.247 MuHd_075 : 29.549 17.813 9.712 6.941 MuHd_095 : 39.304 19.869 9.566 8.171 MuHd_100 : 43.356 20.455 10.028 9.708 MuHd_105 : 50.446 23.622 11.885 11.169 Hmax_075 : 15.167 15.050 2.434 5.270 Hmax_095 : 8.575 8.313 0.379 3.159 Hmax_100 : 8.400 10.300 0.552 4.270 Hmax_105 : 12.000 14.933 1.710 4.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0212 0.9788 DFMC : 0.0180 0.9820 This protein is probably imported in mitochondria. f(Ser) = 0.1087 f(Arg) = 0.1739 CMi = 0.34674 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 706 BBOV_II000870 MLIALTSGVRPIRFVWATTRSNDRILWQSSAWFSTHRLFRIRRYIKEELDKGSLNENTLREANRIDPRLTVNAVEAHYPD 80 GFPKSEGILREYLKALMLTNRFDSRSLKPLIIPKYMSNVAVSKGLPHPRTNQIDHYGDTQASSNKYDESSEPNGLNSLGN 160 GKLYVNSDPKNPVHVVVTPAASSKFMRFFKGLLSFGSIAFCFGSLYLLLNQNLQRGLKHSFKVVDPEDVDTTFADVKGCD 240 EVKRELDDVVDYLKNPEKFERLGAKLPKGILLSGPPGTGKTLLARAIAGEAGVPFIQASGSEFEEMFVGVGARRIRELFA 320 LARTMTPCIVFIDELDALGSKRSSTDHNSVRMTLNQLLVELDGFSKREGVVVLCATNFPESLDPALVRPGRLDRTIHIPL 400 PDYNGRYDILKLYSKKILVSPDVDLATIAKRTVGMTGADIFNILNMAALKCSIQGLASVTPSAIEEAFDRVVVGLKGKPL 480 TNERERKATAYHEGGHTLVSIHTPGATQVHKATIAPRGRTLGVTWKIPEEKSDTRMSELHAEIAVLMGGMAAEEVIYGKE 560 NVSTGCQSDLEKAADIARTMVMNFGVGMDDVSGPMFLDHKDYAKLSEEHRKRVDTAVQKILNAGYRQASSVIRGNLVQLH 640 NLSDALVQYETLSADEIKHAIRGEMKDIEQIRQAQLSEIRAQNKRYSHSQHGNNDLLPETQHSYRT 720 ..........................................P..................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ BBOV_II000870 10 ALTSGVR|PI 0.073 . BBOV_II000870 13 SGVRPIR|FV 0.423 . BBOV_II000870 20 FVWATTR|SN 0.147 . BBOV_II000870 24 TTRSNDR|IL 0.100 . BBOV_II000870 37 AWFSTHR|LF 0.075 . BBOV_II000870 40 STHRLFR|IR 0.240 . BBOV_II000870 42 HRLFRIR|RY 0.109 . BBOV_II000870 43 RLFRIRR|YI 0.591 *ProP* BBOV_II000870 46 RIRRYIK|EE 0.106 . BBOV_II000870 51 IKEELDK|GS 0.059 . BBOV_II000870 60 LNENTLR|EA 0.098 . BBOV_II000870 64 TLREANR|ID 0.084 . BBOV_II000870 68 ANRIDPR|LT 0.092 . BBOV_II000870 84 YPDGFPK|SE 0.099 . BBOV_II000870 90 KSEGILR|EY 0.091 . BBOV_II000870 94 ILREYLK|AL 0.061 . BBOV_II000870 101 ALMLTNR|FD 0.107 . BBOV_II000870 105 TNRFDSR|SL 0.139 . BBOV_II000870 108 FDSRSLK|PL 0.138 . BBOV_II000870 114 KPLIIPK|YM 0.072 . BBOV_II000870 123 SNVAVSK|GL 0.069 . BBOV_II000870 129 KGLPHPR|TN 0.082 . BBOV_II000870 145 TQASSNK|YD 0.094 . BBOV_II000870 162 NSLGNGK|LY 0.055 . BBOV_II000870 170 YVNSDPK|NP 0.060 . BBOV_II000870 184 TPAASSK|FM 0.073 . BBOV_II000870 187 ASSKFMR|FF 0.182 . BBOV_II000870 190 KFMRFFK|GL 0.142 . BBOV_II000870 215 LNQNLQR|GL 0.111 . BBOV_II000870 218 NLQRGLK|HS 0.126 . BBOV_II000870 222 GLKHSFK|VV 0.099 . BBOV_II000870 237 TTFADVK|GC 0.069 . BBOV_II000870 243 KGCDEVK|RE 0.056 . BBOV_II000870 244 GCDEVKR|EL 0.266 . BBOV_II000870 254 DVVDYLK|NP 0.057 . BBOV_II000870 258 YLKNPEK|FE 0.061 . BBOV_II000870 261 NPEKFER|LG 0.088 . BBOV_II000870 265 FERLGAK|LP 0.068 . BBOV_II000870 268 LGAKLPK|GI 0.075 . BBOV_II000870 280 GPPGTGK|TL 0.058 . BBOV_II000870 285 GKTLLAR|AI 0.098 . BBOV_II000870 313 FVGVGAR|RI 0.092 . BBOV_II000870 314 VGVGARR|IR 0.083 . BBOV_II000870 316 VGARRIR|EL 0.285 . BBOV_II000870 323 ELFALAR|TM 0.082 . BBOV_II000870 341 LDALGSK|RS 0.058 . BBOV_II000870 342 DALGSKR|SS 0.263 . BBOV_II000870 351 TDHNSVR|MT 0.127 . BBOV_II000870 366 ELDGFSK|RE 0.060 . BBOV_II000870 367 LDGFSKR|EG 0.166 . BBOV_II000870 388 LDPALVR|PG 0.075 . BBOV_II000870 391 ALVRPGR|LD 0.178 . BBOV_II000870 394 RPGRLDR|TI 0.342 . BBOV_II000870 406 LPDYNGR|YD 0.095 . BBOV_II000870 411 GRYDILK|LY 0.076 . BBOV_II000870 415 ILKLYSK|KI 0.057 . BBOV_II000870 416 LKLYSKK|IL 0.081 . BBOV_II000870 430 DLATIAK|RT 0.060 . BBOV_II000870 431 LATIAKR|TV 0.289 . BBOV_II000870 450 LNMAALK|CS 0.076 . BBOV_II000870 470 IEEAFDR|VV 0.087 . BBOV_II000870 476 RVVVGLK|GK 0.053 . BBOV_II000870 478 VVGLKGK|PL 0.065 . BBOV_II000870 484 KPLTNER|ER 0.067 . BBOV_II000870 486 LTNERER|KA 0.114 . BBOV_II000870 487 TNERERK|AT 0.353 . BBOV_II000870 511 GATQVHK|AT 0.067 . BBOV_II000870 517 KATIAPR|GR 0.095 . BBOV_II000870 519 TIAPRGR|TL 0.108 . BBOV_II000870 526 TLGVTWK|IP 0.069 . BBOV_II000870 531 WKIPEEK|SD 0.073 . BBOV_II000870 535 EEKSDTR|MS 0.077 . BBOV_II000870 559 EEVIYGK|EN 0.059 . BBOV_II000870 572 CQSDLEK|AA 0.097 . BBOV_II000870 578 KAADIAR|TM 0.084 . BBOV_II000870 600 PMFLDHK|DY 0.060 . BBOV_II000870 604 DHKDYAK|LS 0.066 . BBOV_II000870 610 KLSEEHR|KR 0.082 . BBOV_II000870 611 LSEEHRK|RV 0.156 . BBOV_II000870 612 SEEHRKR|VD 0.212 . BBOV_II000870 619 VDTAVQK|IL 0.067 . BBOV_II000870 626 ILNAGYR|QA 0.159 . BBOV_II000870 633 QASSVIR|GN 0.129 . BBOV_II000870 658 LSADEIK|HA 0.095 . BBOV_II000870 662 EIKHAIR|GE 0.096 . BBOV_II000870 666 AIRGEMK|DI 0.106 . BBOV_II000870 672 KDIEQIR|QA 0.114 . BBOV_II000870 680 AQLSEIR|AQ 0.073 . BBOV_II000870 684 EIRAQNK|RY 0.076 . BBOV_II000870 685 IRAQNKR|YS 0.365 . BBOV_II000870 705 ETQHSYR|T- 0.098 . ____________________________^_________________

  • Fasta :-

    >BBOV_II000870 ATGTTAATAGCGTTGACCAGCGGCGTTCGGCCTATCCGGTTCGTCTGGGCTACAACGCGA TCAAACGACCGTATATTGTGGCAATCTTCCGCCTGGTTCTCAACACATCGTCTCTTCCGT ATCAGAAGATATATAAAAGAAGAACTGGACAAGGGCTCTTTGAATGAAAATACGCTAAGA GAAGCTAACAGGATTGATCCCAGACTGACGGTTAATGCAGTGGAAGCACATTATCCTGAT GGATTCCCTAAAAGTGAAGGTATTTTGAGGGAATACCTAAAGGCACTCATGTTAACTAAT AGATTTGATTCTCGTAGCTTGAAACCATTAATTATACCGAAGTATATGTCCAATGTTGCA GTGTCAAAAGGTCTCCCTCATCCGCGCACTAATCAAATTGATCATTACGGAGATACACAG GCTTCCTCAAATAAGTATGATGAATCATCAGAACCAAATGGATTGAATTCATTGGGAAAC GGGAAATTATATGTTAATTCAGACCCCAAGAATCCAGTACACGTAGTCGTTACGCCAGCA GCTAGCAGTAAATTCATGCGTTTTTTCAAAGGGCTGTTGTCATTCGGCTCTATCGCATTT TGTTTTGGATCTTTGTATCTATTATTGAACCAAAATCTACAAAGAGGGTTGAAACACAGT TTTAAGGTTGTAGATCCTGAGGATGTAGATACAACATTTGCAGATGTGAAGGGATGTGAC GAAGTTAAAAGGGAGTTGGATGATGTAGTAGACTATCTAAAGAATCCAGAGAAATTCGAA AGACTAGGAGCTAAGCTCCCTAAAGGCATATTGTTGTCAGGACCACCTGGTACCGGTAAG ACCCTCCTGGCAAGAGCCATTGCTGGAGAGGCTGGAGTTCCATTTATACAAGCTTCTGGA TCGGAATTTGAGGAGATGTTTGTTGGTGTAGGGGCTAGGCGCATCCGTGAGTTGTTTGCG TTAGCTAGGACAATGACTCCTTGCATCGTATTTATTGATGAACTAGATGCATTAGGTTCT AAACGTTCATCCACCGATCACAACAGCGTTAGAATGACGTTGAACCAATTGTTAGTTGAA TTAGATGGCTTCTCTAAGCGTGAGGGTGTAGTAGTTCTTTGTGCAACCAATTTCCCGGAG TCACTCGATCCAGCGTTGGTTAGACCAGGCCGCCTAGATAGGACTATACATATTCCATTG CCAGATTACAATGGACGTTACGATATTCTGAAGCTTTACAGTAAGAAGATACTGGTCTCA CCAGATGTTGATCTGGCAACGATCGCCAAACGTACTGTAGGGATGACAGGTGCTGATATA TTTAATATTCTTAACATGGCAGCTCTTAAATGCTCCATACAGGGTCTAGCTTCGGTGACA CCATCTGCTATAGAAGAAGCCTTTGATAGGGTTGTTGTAGGCCTAAAAGGTAAACCTTTA ACAAATGAGCGTGAGAGGAAGGCGACAGCGTATCATGAAGGTGGGCACACGTTAGTCAGT ATACATACGCCGGGAGCTACACAAGTGCACAAAGCGACTATTGCACCTCGTGGTCGTACC CTTGGTGTAACGTGGAAGATCCCAGAGGAAAAGTCGGATACGCGAATGTCTGAGTTGCAC GCAGAAATAGCAGTCTTGATGGGTGGCATGGCAGCTGAAGAAGTTATATACGGTAAGGAA AATGTATCGACAGGCTGTCAGAGCGACTTGGAAAAGGCTGCTGATATTGCGAGGACAATG GTCATGAACTTCGGAGTTGGAATGGATGATGTCAGTGGCCCTATGTTCTTGGATCACAAA GATTATGCCAAACTAAGTGAGGAACACCGTAAGCGCGTTGACACTGCAGTACAAAAGATA CTTAATGCTGGTTATCGTCAAGCATCCAGTGTTATTCGTGGAAATTTGGTACAGTTGCAC AATCTTTCAGATGCACTTGTGCAATATGAAACTCTTAGCGCCGATGAAATAAAACATGCA ATACGTGGTGAAATGAAAGATATTGAACAAATACGTCAAGCACAATTGTCGGAAATACGA GCGCAAAACAAAAGGTACTCCCATTCTCAGCATGGGAATAACGACCTCTTGCCAGAAACT CAGCACTCTTACCGCACTTAA
  • Download Fasta

  • Fasta :-

    MLIALTSGVRPIRFVWATTRSNDRILWQSSAWFSTHRLFRIRRYIKEELDKGSLNENTLR EANRIDPRLTVNAVEAHYPDGFPKSEGILREYLKALMLTNRFDSRSLKPLIIPKYMSNVA VSKGLPHPRTNQIDHYGDTQASSNKYDESSEPNGLNSLGNGKLYVNSDPKNPVHVVVTPA ASSKFMRFFKGLLSFGSIAFCFGSLYLLLNQNLQRGLKHSFKVVDPEDVDTTFADVKGCD EVKRELDDVVDYLKNPEKFERLGAKLPKGILLSGPPGTGKTLLARAIAGEAGVPFIQASG SEFEEMFVGVGARRIRELFALARTMTPCIVFIDELDALGSKRSSTDHNSVRMTLNQLLVE LDGFSKREGVVVLCATNFPESLDPALVRPGRLDRTIHIPLPDYNGRYDILKLYSKKILVS PDVDLATIAKRTVGMTGADIFNILNMAALKCSIQGLASVTPSAIEEAFDRVVVGLKGKPL TNERERKATAYHEGGHTLVSIHTPGATQVHKATIAPRGRTLGVTWKIPEEKSDTRMSELH AEIAVLMGGMAAEEVIYGKENVSTGCQSDLEKAADIARTMVMNFGVGMDDVSGPMFLDHK DYAKLSEEHRKRVDTAVQKILNAGYRQASSVIRGNLVQLHNLSDALVQYETLSADEIKHA IRGEMKDIEQIRQAQLSEIRAQNKRYSHSQHGNNDLLPETQHSYRT

  • title: ATP binding site
  • coordinates: P275,P276,G277,T278,G279,K280,T281,L282,D333,N377
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_II000870687 SNKRYSHSQH0.991unspBBOV_II000870687 SNKRYSHSQH0.991unspBBOV_II000870687 SNKRYSHSQH0.991unspBBOV_II000870344 SSKRSSTDHN0.995unspBBOV_II000870365 SLDGFSKREG0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India