BBOV_III005230 | ATP-dependent metalloprotease FtsH family protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_III005230mTP0.3666270.0005050.632868CS pos: 46-47. RQY-GT. Pr: 0.4673
No Results

  • Fasta :-

    >BBOV_III005230 MTILSRQALRRVFGASGHRFLRNNGIGTVRVLPEHHHLGSSLPRQYGTTVVLDLSAIQPK SKRFVTSYQVLAAKPPTGFGKFTRKDDATEDTNNKETPAASDDKNPSEKGKDNTNETKDQ KNDDDRKGFGRLMEPYTLIIIGIGSMLLLDVLDSGGLRNEITLQEFIGKYLMKGLVERIQ IVNKEFCRCSLVTGVDHTMPRVVSFRIGSLEAFEQKLDDIQASMGIHPQDYIGIHYVNEV NVLGELKHYIPFMVVMMLLGLGLRKLTVRSTGGMDRFFRMGKMNIVDAKDVKVDVKFKDV AGMHEAKKEISEFVDFLKNPKAYEHYGAKIPKGALLCGAPGTGKTLLAKAVAGEANVPFY SISGSDFIEVFVGVGPSRVRDLFEKARKNAPAIVFIDEIDAVGKKRAKGGFSAGANDERE NTLNQILVEMDGFKSSSGVIVLAGTNRADILDPALVRPGRFDRTITINKPDLDERFEIFK VHLSPIKLNKNLDMDDVARRLAALTPSFVGAEIANVSNEAAIQAVRRKSTDGVSLADFDA AIERVMAGLRRSNALLSPAQKLAVAYHEVGHALIGWWLEHADPVLKVSIIPRSSGALGFS QQLPDEAMLFSREALLDKVAVMLGGRAAEDIFIGRITTGATDDLNKVTRMCYAFVSQWGM NPALGLVSYQRGSGDEPEFYRTYSENTAQLIDTEVRTMIESQYARVKSMLREKAELVHKL SKLLYQRETITYHDIASCIGEREFPVEEKLRPYVLSGIEGRVEPIKLPETTGEAINEIKG TEKSDDNTQETNSEVSK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III005230.fa Sequence name : BBOV_III005230 Sequence length : 797 VALUES OF COMPUTED PARAMETERS Coef20 : 4.797 CoefTot : -2.657 ChDiff : 0 ZoneTo : 85 KR : 14 DE : 2 CleavSite : 65 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.547 2.118 0.311 0.761 MesoH : -0.475 0.569 -0.322 0.267 MuHd_075 : 39.594 21.751 8.424 10.739 MuHd_095 : 51.758 28.788 12.862 11.435 MuHd_100 : 39.739 19.822 8.575 8.421 MuHd_105 : 36.844 23.155 8.832 8.611 Hmax_075 : 12.000 13.500 -0.997 5.500 Hmax_095 : 15.600 16.200 2.400 6.000 Hmax_100 : 9.300 10.700 0.483 4.740 Hmax_105 : 10.733 13.650 0.478 3.675 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0048 0.9952 DFMC : 0.0249 0.9751 This protein is probably imported in mitochondria. f(Ser) = 0.0824 f(Arg) = 0.1059 CMi = 0.37736 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 797 BBOV_III005230 MTILSRQALRRVFGASGHRFLRNNGIGTVRVLPEHHHLGSSLPRQYGTTVVLDLSAIQPKSKRFVTSYQVLAAKPPTGFG 80 KFTRKDDATEDTNNKETPAASDDKNPSEKGKDNTNETKDQKNDDDRKGFGRLMEPYTLIIIGIGSMLLLDVLDSGGLRNE 160 ITLQEFIGKYLMKGLVERIQIVNKEFCRCSLVTGVDHTMPRVVSFRIGSLEAFEQKLDDIQASMGIHPQDYIGIHYVNEV 240 NVLGELKHYIPFMVVMMLLGLGLRKLTVRSTGGMDRFFRMGKMNIVDAKDVKVDVKFKDVAGMHEAKKEISEFVDFLKNP 320 KAYEHYGAKIPKGALLCGAPGTGKTLLAKAVAGEANVPFYSISGSDFIEVFVGVGPSRVRDLFEKARKNAPAIVFIDEID 400 AVGKKRAKGGFSAGANDERENTLNQILVEMDGFKSSSGVIVLAGTNRADILDPALVRPGRFDRTITINKPDLDERFEIFK 480 VHLSPIKLNKNLDMDDVARRLAALTPSFVGAEIANVSNEAAIQAVRRKSTDGVSLADFDAAIERVMAGLRRSNALLSPAQ 560 KLAVAYHEVGHALIGWWLEHADPVLKVSIIPRSSGALGFSQQLPDEAMLFSREALLDKVAVMLGGRAAEDIFIGRITTGA 640 TDDLNKVTRMCYAFVSQWGMNPALGLVSYQRGSGDEPEFYRTYSENTAQLIDTEVRTMIESQYARVKSMLREKAELVHKL 720 SKLLYQRETITYHDIASCIGEREFPVEEKLRPYVLSGIEGRVEPIKLPETTGEAINEIKGTEKSDDNTQETNSEVSK 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ............................................................................. 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_III005230 6 -MTILSR|QA 0.075 . BBOV_III005230 10 LSRQALR|RV 0.121 . BBOV_III005230 11 SRQALRR|VF 0.312 . BBOV_III005230 19 FGASGHR|FL 0.086 . BBOV_III005230 22 SGHRFLR|NN 0.418 . BBOV_III005230 30 NGIGTVR|VL 0.073 . BBOV_III005230 44 LGSSLPR|QY 0.124 . BBOV_III005230 60 LSAIQPK|SK 0.096 . BBOV_III005230 62 AIQPKSK|RF 0.063 . BBOV_III005230 63 IQPKSKR|FV 0.374 . BBOV_III005230 74 YQVLAAK|PP 0.061 . BBOV_III005230 81 PPTGFGK|FT 0.085 . BBOV_III005230 84 GFGKFTR|KD 0.148 . BBOV_III005230 85 FGKFTRK|DD 0.092 . BBOV_III005230 95 TEDTNNK|ET 0.060 . BBOV_III005230 104 PAASDDK|NP 0.066 . BBOV_III005230 109 DKNPSEK|GK 0.077 . BBOV_III005230 111 NPSEKGK|DN 0.113 . BBOV_III005230 118 DNTNETK|DQ 0.062 . BBOV_III005230 121 NETKDQK|ND 0.057 . BBOV_III005230 126 QKNDDDR|KG 0.095 . BBOV_III005230 127 KNDDDRK|GF 0.088 . BBOV_III005230 131 DRKGFGR|LM 0.108 . BBOV_III005230 158 LDSGGLR|NE 0.075 . BBOV_III005230 169 LQEFIGK|YL 0.082 . BBOV_III005230 173 IGKYLMK|GL 0.071 . BBOV_III005230 178 MKGLVER|IQ 0.082 . BBOV_III005230 184 RIQIVNK|EF 0.062 . BBOV_III005230 188 VNKEFCR|CS 0.083 . BBOV_III005230 201 VDHTMPR|VV 0.128 . BBOV_III005230 206 PRVVSFR|IG 0.098 . BBOV_III005230 216 LEAFEQK|LD 0.068 . BBOV_III005230 247 NVLGELK|HY 0.059 . BBOV_III005230 264 LLGLGLR|KL 0.066 . BBOV_III005230 265 LGLGLRK|LT 0.070 . BBOV_III005230 269 LRKLTVR|ST 0.199 . BBOV_III005230 276 STGGMDR|FF 0.105 . BBOV_III005230 279 GMDRFFR|MG 0.239 . BBOV_III005230 282 RFFRMGK|MN 0.114 . BBOV_III005230 289 MNIVDAK|DV 0.102 . BBOV_III005230 292 VDAKDVK|VD 0.057 . BBOV_III005230 296 DVKVDVK|FK 0.080 . BBOV_III005230 298 KVDVKFK|DV 0.096 . BBOV_III005230 307 AGMHEAK|KE 0.067 . BBOV_III005230 308 GMHEAKK|EI 0.133 . BBOV_III005230 318 EFVDFLK|NP 0.063 . BBOV_III005230 321 DFLKNPK|AY 0.062 . BBOV_III005230 329 YEHYGAK|IP 0.064 . BBOV_III005230 332 YGAKIPK|GA 0.073 . BBOV_III005230 344 GAPGTGK|TL 0.057 . BBOV_III005230 349 GKTLLAK|AV 0.078 . BBOV_III005230 378 VGVGPSR|VR 0.074 . BBOV_III005230 380 VGPSRVR|DL 0.085 . BBOV_III005230 385 VRDLFEK|AR 0.061 . BBOV_III005230 387 DLFEKAR|KN 0.096 . BBOV_III005230 388 LFEKARK|NA 0.086 . BBOV_III005230 404 EIDAVGK|KR 0.064 . BBOV_III005230 405 IDAVGKK|RA 0.127 . BBOV_III005230 406 DAVGKKR|AK 0.217 . BBOV_III005230 408 VGKKRAK|GG 0.070 . BBOV_III005230 419 AGANDER|EN 0.079 . BBOV_III005230 434 VEMDGFK|SS 0.084 . BBOV_III005230 447 VLAGTNR|AD 0.075 . BBOV_III005230 457 LDPALVR|PG 0.068 . BBOV_III005230 460 ALVRPGR|FD 0.269 . BBOV_III005230 463 RPGRFDR|TI 0.392 . BBOV_III005230 469 RTITINK|PD 0.058 . BBOV_III005230 475 KPDLDER|FE 0.085 . BBOV_III005230 480 ERFEIFK|VH 0.053 . BBOV_III005230 487 VHLSPIK|LN 0.055 . BBOV_III005230 490 SPIKLNK|NL 0.072 . BBOV_III005230 499 DMDDVAR|RL 0.091 . BBOV_III005230 500 MDDVARR|LA 0.103 . BBOV_III005230 526 AAIQAVR|RK 0.080 . BBOV_III005230 527 AIQAVRR|KS 0.196 . BBOV_III005230 528 IQAVRRK|ST 0.206 . BBOV_III005230 544 FDAAIER|VM 0.077 . BBOV_III005230 550 RVMAGLR|RS 0.070 . BBOV_III005230 551 VMAGLRR|SN 0.149 . BBOV_III005230 561 LLSPAQK|LA 0.069 . BBOV_III005230 586 HADPVLK|VS 0.054 . BBOV_III005230 592 KVSIIPR|SS 0.281 . BBOV_III005230 612 EAMLFSR|EA 0.082 . BBOV_III005230 618 REALLDK|VA 0.059 . BBOV_III005230 626 AVMLGGR|AA 0.109 . BBOV_III005230 635 EDIFIGR|IT 0.096 . BBOV_III005230 646 ATDDLNK|VT 0.056 . BBOV_III005230 649 DLNKVTR|MC 0.120 . BBOV_III005230 671 GLVSYQR|GS 0.117 . BBOV_III005230 681 DEPEFYR|TY 0.090 . BBOV_III005230 696 LIDTEVR|TM 0.077 . BBOV_III005230 705 IESQYAR|VK 0.099 . BBOV_III005230 707 SQYARVK|SM 0.073 . BBOV_III005230 711 RVKSMLR|EK 0.069 . BBOV_III005230 713 KSMLREK|AE 0.058 . BBOV_III005230 719 KAELVHK|LS 0.054 . BBOV_III005230 722 LVHKLSK|LL 0.069 . BBOV_III005230 727 SKLLYQR|ET 0.081 . BBOV_III005230 742 ASCIGER|EF 0.074 . BBOV_III005230 749 EFPVEEK|LR 0.057 . BBOV_III005230 751 PVEEKLR|PY 0.079 . BBOV_III005230 761 LSGIEGR|VE 0.084 . BBOV_III005230 766 GRVEPIK|LP 0.071 . BBOV_III005230 779 EAINEIK|GT 0.078 . BBOV_III005230 783 EIKGTEK|SD 0.077 . BBOV_III005230 797 TNSEVSK|-- 0.083 . ____________________________^_________________

  • Fasta :-

    >BBOV_III005230 ATGACGATATTGAGTCGCCAGGCACTGCGACGTGTATTCGGTGCGTCTGGCCATCGTTTT CTACGTAATAACGGCATTGGTACCGTCAGAGTTCTCCCAGAACACCATCACTTGGGCTCA AGCCTTCCCAGACAATATGGTACCACAGTGGTACTTGATCTAAGTGCCATACAACCAAAA TCTAAACGATTTGTAACAAGTTACCAAGTGCTGGCGGCAAAACCGCCAACTGGATTTGGC AAATTCACAAGGAAAGATGATGCAACAGAGGACACAAATAACAAAGAGACTCCAGCAGCA TCAGATGACAAAAACCCAAGTGAAAAAGGTAAAGATAACACAAATGAAACAAAGGATCAA AAGAATGATGATGATCGTAAAGGATTTGGAAGATTAATGGAACCATATACATTGATTATC ATAGGCATAGGGTCAATGCTACTACTGGATGTACTAGATAGCGGTGGATTGCGCAACGAA ATAACACTACAAGAGTTCATTGGCAAGTATCTCATGAAGGGACTGGTAGAACGTATACAA ATAGTGAACAAAGAGTTTTGTAGATGCTCACTGGTTACAGGAGTTGACCATACAATGCCA CGAGTAGTCAGCTTTAGAATAGGCTCTTTGGAAGCTTTCGAGCAGAAGCTAGATGATATA CAGGCGTCCATGGGTATACACCCGCAGGACTATATCGGAATACACTACGTCAACGAAGTA AATGTACTGGGAGAATTGAAACATTATATACCCTTCATGGTGGTAATGATGCTGCTTGGA TTAGGGCTGCGTAAATTGACAGTCAGAAGCACTGGTGGAATGGACCGCTTCTTTAGAATG GGAAAGATGAACATAGTAGATGCCAAGGACGTCAAAGTTGATGTTAAGTTCAAAGATGTA GCCGGTATGCACGAAGCTAAAAAGGAGATTAGCGAGTTTGTTGATTTCTTAAAAAACCCA AAGGCATACGAACACTATGGCGCAAAGATACCGAAGGGAGCACTTCTTTGTGGAGCACCG GGTACAGGTAAAACACTACTGGCAAAGGCCGTAGCAGGTGAAGCGAACGTACCATTTTAC TCAATATCAGGAAGTGATTTCATAGAAGTGTTCGTAGGAGTAGGGCCATCGAGGGTCCGG GATCTATTTGAAAAAGCAAGGAAAAACGCACCAGCAATTGTATTCATTGATGAAATTGAC GCCGTAGGAAAGAAACGCGCTAAAGGAGGCTTCTCAGCAGGAGCTAACGATGAAAGAGAG AATACACTCAACCAGATACTGGTCGAAATGGACGGTTTCAAGTCAAGTAGCGGAGTTATA GTACTGGCCGGCACCAACAGAGCGGATATCCTGGACCCAGCTTTAGTGAGGCCGGGAAGA TTTGATCGCACAATTACTATCAACAAACCGGATCTAGACGAACGGTTTGAAATATTTAAA GTACACCTATCACCAATCAAATTGAACAAGAACCTTGATATGGATGATGTGGCACGCAGG CTAGCTGCACTCACACCCAGCTTCGTGGGAGCGGAAATAGCCAACGTGTCAAATGAAGCA GCAATACAGGCAGTTAGGCGCAAGAGCACCGACGGAGTATCGCTGGCGGATTTTGACGCA GCAATTGAACGTGTTATGGCAGGATTACGTAGGTCCAACGCACTGCTGTCGCCAGCGCAA AAGCTGGCTGTGGCGTACCACGAAGTGGGACATGCCCTAATCGGATGGTGGCTAGAACAT GCGGACCCGGTGCTAAAGGTATCAATCATACCCAGGAGCAGTGGAGCACTAGGATTTTCA CAACAATTGCCAGATGAAGCCATGCTATTCAGCAGAGAGGCATTACTAGACAAGGTAGCA GTAATGCTAGGAGGACGTGCTGCAGAGGATATATTTATAGGACGTATTACCACAGGTGCT ACAGACGACCTGAACAAAGTAACACGCATGTGCTATGCTTTCGTCTCGCAATGGGGAATG AACCCAGCATTAGGATTGGTATCATACCAGCGCGGATCCGGTGATGAACCGGAATTCTAT CGCACATATTCCGAAAACACAGCGCAACTCATAGATACCGAAGTAAGGACAATGATAGAA AGCCAATACGCACGAGTGAAGAGCATGCTCAGAGAAAAAGCTGAACTTGTACATAAACTG TCTAAGCTACTCTACCAAAGAGAGACCATCACATACCACGATATCGCATCGTGCATTGGA GAACGAGAGTTCCCTGTTGAAGAGAAGCTGCGCCCATATGTACTAAGCGGAATTGAAGGA AGGGTTGAACCCATCAAATTGCCAGAAACTACAGGCGAAGCTATAAACGAAATTAAGGGC ACCGAGAAAAGCGATGACAATACCCAAGAGACCAACTCAGAAGTGTCTAAATAA
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  • Fasta :-

    MTILSRQALRRVFGASGHRFLRNNGIGTVRVLPEHHHLGSSLPRQYGTTVVLDLSAIQPK SKRFVTSYQVLAAKPPTGFGKFTRKDDATEDTNNKETPAASDDKNPSEKGKDNTNETKDQ KNDDDRKGFGRLMEPYTLIIIGIGSMLLLDVLDSGGLRNEITLQEFIGKYLMKGLVERIQ IVNKEFCRCSLVTGVDHTMPRVVSFRIGSLEAFEQKLDDIQASMGIHPQDYIGIHYVNEV NVLGELKHYIPFMVVMMLLGLGLRKLTVRSTGGMDRFFRMGKMNIVDAKDVKVDVKFKDV AGMHEAKKEISEFVDFLKNPKAYEHYGAKIPKGALLCGAPGTGKTLLAKAVAGEANVPFY SISGSDFIEVFVGVGPSRVRDLFEKARKNAPAIVFIDEIDAVGKKRAKGGFSAGANDERE NTLNQILVEMDGFKSSSGVIVLAGTNRADILDPALVRPGRFDRTITINKPDLDERFEIFK VHLSPIKLNKNLDMDDVARRLAALTPSFVGAEIANVSNEAAIQAVRRKSTDGVSLADFDA AIERVMAGLRRSNALLSPAQKLAVAYHEVGHALIGWWLEHADPVLKVSIIPRSSGALGFS QQLPDEAMLFSREALLDKVAVMLGGRAAEDIFIGRITTGATDDLNKVTRMCYAFVSQWGM NPALGLVSYQRGSGDEPEFYRTYSENTAQLIDTEVRTMIESQYARVKSMLREKAELVHKL SKLLYQRETITYHDIASCIGEREFPVEEKLRPYVLSGIEGRVEPIKLPETTGEAINEIKG TEKSDDNTQETNSEVSK

    No Results
  • title: ATP binding site
  • coordinates: A339,P340,G341,T342,G343,K344,T345,L346,D397,N446
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_III005230673 SYQRGSGDEP0.997unspBBOV_III005230673 SYQRGSGDEP0.997unspBBOV_III005230673 SYQRGSGDEP0.997unspBBOV_III005230107 SDKNPSEKGK0.995unspBBOV_III005230529 SVRRKSTDGV0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India