BBOV_IV000320 | proteasome subunit alpha type 1

UniProt_ID: A7AV06

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	BBOV_IV000320	OTHER	0.999932	0.000052	0.000016

No Results

Fasta :-
>BBOV_IV000320 MYRNQYDTDCITWSPQGRLFQVEYAMEAVKQGTCCVGIKSQTHIVLCAVRRKSSKLAEYQ DKIFCIGEHIAVVMSGITSDAKMIVNYMRNECLNNKFLYGCDITATKLVSLIAQKSQANT QTSSKRPFGVGLLVAGYDDRTGLHLYETCPSGNVVEYNATAFGARCQSAKTYLERKIANF EECNIDSLIYHAVKAVKMTIPSDGEFDVDMVTVCILGKDMPFKLLTTAETQPYVDKVCHL LLVYYVFFLLANDIPFR
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV000320.fa Sequence name : BBOV_IV000320 Sequence length : 257 VALUES OF COMPUTED PARAMETERS Coef20 : 3.722 CoefTot : -0.468 ChDiff : 1 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.265 1.818 0.196 0.722 MesoH : -0.436 0.612 -0.327 0.297 MuHd_075 : 28.039 15.013 7.723 6.219 MuHd_095 : 19.162 0.664 1.372 3.482 MuHd_100 : 15.699 2.630 0.860 2.837 MuHd_105 : 6.502 6.531 1.665 0.415 Hmax_075 : 4.083 2.917 0.306 2.170 Hmax_095 : -0.200 -3.600 -3.204 0.866 Hmax_100 : -0.200 -3.600 -2.549 0.430 Hmax_105 : -8.400 -5.700 -4.222 -0.548 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8585 0.1415 DFMC : 0.8308 0.1692

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 257 BBOV_IV000320 MYRNQYDTDCITWSPQGRLFQVEYAMEAVKQGTCCVGIKSQTHIVLCAVRRKSSKLAEYQDKIFCIGEHIAVVMSGITSD 80 AKMIVNYMRNECLNNKFLYGCDITATKLVSLIAQKSQANTQTSSKRPFGVGLLVAGYDDRTGLHLYETCPSGNVVEYNAT 160 AFGARCQSAKTYLERKIANFEECNIDSLIYHAVKAVKMTIPSDGEFDVDMVTVCILGKDMPFKLLTTAETQPYVDKVCHL 240 LLVYYVFFLLANDIPFR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV000320 3 ----MYR|NQ 0.080 . BBOV_IV000320 18 TWSPQGR|LF 0.123 . BBOV_IV000320 30 YAMEAVK|QG 0.059 . BBOV_IV000320 39 TCCVGIK|SQ 0.080 . BBOV_IV000320 50 IVLCAVR|RK 0.076 . BBOV_IV000320 51 VLCAVRR|KS 0.136 . BBOV_IV000320 52 LCAVRRK|SS 0.139 . BBOV_IV000320 55 VRRKSSK|LA 0.096 . BBOV_IV000320 62 LAEYQDK|IF 0.081 . BBOV_IV000320 82 GITSDAK|MI 0.064 . BBOV_IV000320 89 MIVNYMR|NE 0.080 . BBOV_IV000320 96 NECLNNK|FL 0.064 . BBOV_IV000320 107 CDITATK|LV 0.066 . BBOV_IV000320 115 VSLIAQK|SQ 0.067 . BBOV_IV000320 125 NTQTSSK|RP 0.061 . BBOV_IV000320 126 TQTSSKR|PF 0.266 . BBOV_IV000320 140 VAGYDDR|TG 0.068 . BBOV_IV000320 165 ATAFGAR|CQ 0.105 . BBOV_IV000320 170 ARCQSAK|TY 0.065 . BBOV_IV000320 175 AKTYLER|KI 0.091 . BBOV_IV000320 176 KTYLERK|IA 0.090 . BBOV_IV000320 194 LIYHAVK|AV 0.075 . BBOV_IV000320 197 HAVKAVK|MT 0.073 . BBOV_IV000320 218 TVCILGK|DM 0.070 . BBOV_IV000320 223 GKDMPFK|LL 0.086 . BBOV_IV000320 236 TQPYVDK|VC 0.061 . BBOV_IV000320 257 ANDIPFR|-- 0.089 . ____________________________^_________________

Fasta :-
>BBOV_IV000320 ATGTACCGCAATCAGTATGATACGGACTGCATTACCTGGTCGCCTCAAGGGCGTCTGTTT CAGGTAGAATATGCCATGGAAGCTGTTAAACAAGGTACATGTTGTGTAGGAATTAAATCG CAGACTCACATTGTCTTATGCGCCGTTCGTCGTAAGTCGTCCAAATTGGCGGAATATCAG GACAAAATATTTTGCATCGGCGAACATATTGCTGTTGTTATGTCTGGTATTACATCTGAT GCGAAGATGATTGTAAACTATATGCGCAATGAGTGCCTCAATAACAAGTTTTTGTACGGC TGCGACATTACCGCAACAAAGCTAGTATCACTTATTGCTCAAAAATCTCAAGCCAACACG CAAACATCATCCAAGAGGCCTTTTGGTGTCGGTCTTCTCGTTGCTGGGTACGATGACAGG ACTGGTTTACACTTATATGAGACATGTCCCAGCGGTAACGTTGTGGAATACAATGCTACT GCCTTTGGCGCTCGTTGCCAAAGTGCCAAAACATACCTCGAACGTAAAATTGCCAACTTC GAGGAGTGCAATATAGATTCCCTTATATACCATGCAGTCAAGGCAGTAAAAATGACAATT CCTAGTGATGGAGAGTTTGATGTTGACATGGTGACGGTGTGCATCTTAGGCAAGGATATG CCATTCAAATTGTTGACAACCGCTGAAACCCAGCCTTACGTTGATAAGGTATGTCATCTA CTGCTTGTTTATTATGTATTCTTTCTCTTGGCAAATGACATCCCTTTTAGGTAA
Download Fasta

Fasta :-

MYRNQYDTDCITWSPQGRLFQVEYAMEAVKQGTCCVGIKSQTHIVLCAVRRKSSKLAEYQ DKIFCIGEHIAVVMSGITSDAKMIVNYMRNECLNNKFLYGCDITATKLVSLIAQKSQANT QTSSKRPFGVGLLVAGYDDRTGLHLYETCPSGNVVEYNATAFGARCQSAKTYLERKIANF EECNIDSLIYHAVKAVKMTIPSDGEFDVDMVTVCILGKDMPFKLLTTAETQPYVDKVCHL LLVYYVFFLLANDIPFR

Proteasome subunits

title: active site
coordinates: T33,V49,R51,K62,A164

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	BBOV_IV000320	53 S	VRRKSSKLA	0.998	unsp	BBOV_IV000320	123 S	NTQTSSKRP	0.996	unsp

BBOV_IV000320 | proteasome subunit alpha type 1

ID's

UniProt_ID: A7AV06

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India