BBOV_IV002030 | conserved hypothetical protein

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
BBOV_IV002030OTHER0.9991460.0000730.000782
No Results

  • Fasta :-

    >BBOV_IV002030 MSRFHFRRSQRDITSRHGVVITRGMERDLLNGSVDLQVLDSEECQALTNTLQVLIDTAEV NSTSDNDVLHGCNNTVITYSQQIVQQLSERRYKERLAGISVANSVQYIRFKPGSLRELPE ELLSSIVSVLVSLIVEHIASSRNEDQDYLLKWAGVVIRRIGKLLQVNEILLDALLKPITQ YSMLRALSVDMNTLVNRQMHLDIILEQLSLLQPDLDEEFKRNVEEARDYLNSTDVGNVIR RPSMGIFNSISRKINRVLTRAMEPTESSGHRDSESAERTSSIDGVVETCESEVEEVAEDP DFEDADAKSDINLNDELLLDTVPARAVLLRNLVTGYIMSGHNDSRVQLLFQEFSSALGMS KHTVLALETYIAAELVSAIHSSNTGTTKKVTRNLKIAAVAAGGGALIALSAGVASPAVAA GIAVLGIGGGGMSGYLSTTEEAELLASIFGVGSSGLVGWRGKKASSRVDPDFHHINEQSG RSLTVCIGICGTLSSGIEFISMWEEAVRAPLCDFYAMEWETGLLRCLGRMSQLMSEQPFS DSAARLQEKLAPNNALVPVIQWPLPLIHFAQPFENAFTIVNQKSIFYGATLAQAIMDRHA VGERPISLLGYSVGARVIFHALLKLYDKQKLSIIKDVVLMGLPVIVDTSEWFQCSSVVAG RLINVYSRHDWQLGYIYRDIEFGQSVAGLRPVTSERVENYDATDFIKGHHSYMSKISDIL TLVHIDL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV002030.fa Sequence name : BBOV_IV002030 Sequence length : 727 VALUES OF COMPUTED PARAMETERS Coef20 : 4.686 CoefTot : -0.225 ChDiff : -22 ZoneTo : 25 KR : 6 DE : 1 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.800 2.094 0.406 0.724 MesoH : 0.845 1.024 0.054 0.479 MuHd_075 : 49.677 19.057 9.998 9.440 MuHd_095 : 47.846 18.559 8.557 10.507 MuHd_100 : 36.405 14.959 6.013 7.605 MuHd_105 : 18.637 13.874 3.972 5.055 Hmax_075 : 9.200 6.400 -0.112 3.550 Hmax_095 : 6.000 8.500 -1.032 3.670 Hmax_100 : 4.700 8.600 -1.263 3.080 Hmax_105 : 0.350 12.133 -0.033 2.473 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1192 0.8808 DFMC : 0.2616 0.7384 This protein is probably imported in mitochondria. f(Ser) = 0.1200 f(Arg) = 0.2400 CMi = 0.29557 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 727 BBOV_IV002030 MSRFHFRRSQRDITSRHGVVITRGMERDLLNGSVDLQVLDSEECQALTNTLQVLIDTAEVNSTSDNDVLHGCNNTVITYS 80 QQIVQQLSERRYKERLAGISVANSVQYIRFKPGSLRELPEELLSSIVSVLVSLIVEHIASSRNEDQDYLLKWAGVVIRRI 160 GKLLQVNEILLDALLKPITQYSMLRALSVDMNTLVNRQMHLDIILEQLSLLQPDLDEEFKRNVEEARDYLNSTDVGNVIR 240 RPSMGIFNSISRKINRVLTRAMEPTESSGHRDSESAERTSSIDGVVETCESEVEEVAEDPDFEDADAKSDINLNDELLLD 320 TVPARAVLLRNLVTGYIMSGHNDSRVQLLFQEFSSALGMSKHTVLALETYIAAELVSAIHSSNTGTTKKVTRNLKIAAVA 400 AGGGALIALSAGVASPAVAAGIAVLGIGGGGMSGYLSTTEEAELLASIFGVGSSGLVGWRGKKASSRVDPDFHHINEQSG 480 RSLTVCIGICGTLSSGIEFISMWEEAVRAPLCDFYAMEWETGLLRCLGRMSQLMSEQPFSDSAARLQEKLAPNNALVPVI 560 QWPLPLIHFAQPFENAFTIVNQKSIFYGATLAQAIMDRHAVGERPISLLGYSVGARVIFHALLKLYDKQKLSIIKDVVLM 640 GLPVIVDTSEWFQCSSVVAGRLINVYSRHDWQLGYIYRDIEFGQSVAGLRPVTSERVENYDATDFIKGHHSYMSKISDIL 720 TLVHIDL 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ....... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV002030 3 ----MSR|FH 0.075 . BBOV_IV002030 7 MSRFHFR|RS 0.106 . BBOV_IV002030 8 SRFHFRR|SQ 0.408 . BBOV_IV002030 11 HFRRSQR|DI 0.390 . BBOV_IV002030 16 QRDITSR|HG 0.096 . BBOV_IV002030 23 HGVVITR|GM 0.095 . BBOV_IV002030 27 ITRGMER|DL 0.098 . BBOV_IV002030 90 VQQLSER|RY 0.077 . BBOV_IV002030 91 QQLSERR|YK 0.116 . BBOV_IV002030 93 LSERRYK|ER 0.135 . BBOV_IV002030 95 ERRYKER|LA 0.191 . BBOV_IV002030 109 NSVQYIR|FK 0.096 . BBOV_IV002030 111 VQYIRFK|PG 0.064 . BBOV_IV002030 116 FKPGSLR|EL 0.084 . BBOV_IV002030 142 EHIASSR|NE 0.077 . BBOV_IV002030 151 DQDYLLK|WA 0.071 . BBOV_IV002030 158 WAGVVIR|RI 0.131 . BBOV_IV002030 159 AGVVIRR|IG 0.090 . BBOV_IV002030 162 VIRRIGK|LL 0.110 . BBOV_IV002030 176 LLDALLK|PI 0.062 . BBOV_IV002030 185 TQYSMLR|AL 0.112 . BBOV_IV002030 197 MNTLVNR|QM 0.079 . BBOV_IV002030 220 DLDEEFK|RN 0.056 . BBOV_IV002030 221 LDEEFKR|NV 0.381 . BBOV_IV002030 227 RNVEEAR|DY 0.119 . BBOV_IV002030 240 DVGNVIR|RP 0.090 . BBOV_IV002030 241 VGNVIRR|PS 0.181 . BBOV_IV002030 252 IFNSISR|KI 0.094 . BBOV_IV002030 253 FNSISRK|IN 0.100 . BBOV_IV002030 256 ISRKINR|VL 0.103 . BBOV_IV002030 260 INRVLTR|AM 0.157 . BBOV_IV002030 271 TESSGHR|DS 0.241 . BBOV_IV002030 278 DSESAER|TS 0.085 . BBOV_IV002030 308 FEDADAK|SD 0.071 . BBOV_IV002030 325 LDTVPAR|AV 0.090 . BBOV_IV002030 330 ARAVLLR|NL 0.123 . BBOV_IV002030 345 SGHNDSR|VQ 0.072 . BBOV_IV002030 361 SALGMSK|HT 0.066 . BBOV_IV002030 388 SNTGTTK|KV 0.083 . BBOV_IV002030 389 NTGTTKK|VT 0.085 . BBOV_IV002030 392 TTKKVTR|NL 0.106 . BBOV_IV002030 395 KVTRNLK|IA 0.118 . BBOV_IV002030 460 SGLVGWR|GK 0.080 . BBOV_IV002030 462 LVGWRGK|KA 0.067 . BBOV_IV002030 463 VGWRGKK|AS 0.268 . BBOV_IV002030 467 GKKASSR|VD 0.088 . BBOV_IV002030 481 INEQSGR|SL 0.164 . BBOV_IV002030 508 MWEEAVR|AP 0.072 . BBOV_IV002030 525 WETGLLR|CL 0.079 . BBOV_IV002030 529 LLRCLGR|MS 0.090 . BBOV_IV002030 545 FSDSAAR|LQ 0.083 . BBOV_IV002030 549 AARLQEK|LA 0.061 . BBOV_IV002030 583 FTIVNQK|SI 0.080 . BBOV_IV002030 598 AQAIMDR|HA 0.115 . BBOV_IV002030 604 RHAVGER|PI 0.098 . BBOV_IV002030 616 GYSVGAR|VI 0.114 . BBOV_IV002030 624 IFHALLK|LY 0.063 . BBOV_IV002030 628 LLKLYDK|QK 0.064 . BBOV_IV002030 630 KLYDKQK|LS 0.065 . BBOV_IV002030 635 QKLSIIK|DV 0.071 . BBOV_IV002030 661 SSVVAGR|LI 0.090 . BBOV_IV002030 668 LINVYSR|HD 0.095 . BBOV_IV002030 678 QLGYIYR|DI 0.163 . BBOV_IV002030 690 QSVAGLR|PV 0.100 . BBOV_IV002030 696 RPVTSER|VE 0.074 . BBOV_IV002030 707 DATDFIK|GH 0.064 . BBOV_IV002030 715 HHSYMSK|IS 0.071 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV002030 CTGCAATGTCACGTTTTCACTTTCGCAGGTCGCAAAGGGATATTACATCCCGCCATGGTG TTGTCATAACACGTGGTATGGAGCGTGATTTGTTGAATGGCAGTGTGGACCTTCAGGTTT TGGATAGCGAGGAGTGCCAGGCGTTGACTAACACGCTCCAGGTGCTTATTGACACTGCTG AAGTCAATTCTACGAGTGACAACGATGTGTTACATGGCTGTAACAATACGGTGATTACAT ATTCTCAGCAAATAGTCCAGCAGTTATCTGAGCGTCGATACAAGGAGCGTTTGGCTGGTA TATCGGTAGCTAATTCAGTTCAATACATTCGTTTTAAGCCTGGCTCTCTTAGGGAGCTTC CTGAGGAGCTTTTGAGTTCCATTGTTTCTGTGCTTGTATCGTTGATAGTCGAGCACATCG CAAGTAGTCGCAATGAAGACCAAGACTATTTACTCAAGTGGGCTGGCGTCGTCATTAGGC GCATAGGCAAGCTTTTACAGGTCAACGAGATATTATTGGATGCTTTGCTTAAGCCCATAA CTCAGTATTCCATGTTGAGGGCTTTATCAGTTGACATGAACACTTTGGTTAACCGTCAGA TGCACTTGGATATTATCTTGGAGCAGCTGAGTCTTTTACAGCCTGACTTGGATGAGGAGT TCAAGCGTAATGTTGAGGAGGCTCGTGATTACTTGAACAGTACTGACGTGGGCAATGTCA TTCGTCGTCCCAGTATGGGTATATTCAATTCAATATCTCGCAAGATAAATCGCGTCTTGA CTAGGGCTATGGAGCCTACGGAATCCAGTGGTCATCGTGACTCAGAATCTGCTGAGCGCA CTAGCAGTATTGACGGTGTCGTTGAAACCTGTGAATCTGAGGTAGAGGAAGTGGCTGAGG ACCCTGACTTTGAAGATGCTGATGCCAAATCGGATATTAACTTAAATGATGAGTTGTTGT TAGACACAGTTCCGGCACGTGCTGTATTGTTGCGTAACTTGGTTACCGGTTACATTATGA GTGGTCACAATGACTCTCGCGTTCAGTTACTATTTCAGGAATTTTCATCAGCTTTGGGTA TGAGTAAGCACACTGTATTGGCTTTAGAGACGTACATAGCAGCTGAGTTGGTGAGTGCCA TTCATTCATCTAACACTGGCACTACTAAGAAGGTAACTCGCAATTTAAAGATTGCTGCTG TCGCTGCCGGTGGCGGTGCTTTGATAGCTCTGAGTGCTGGTGTAGCTTCTCCAGCGGTTG CTGCTGGCATAGCTGTACTTGGTATTGGCGGTGGTGGAATGTCTGGTTACTTATCTACTA CTGAAGAGGCTGAGCTTTTGGCGTCAATCTTTGGCGTGGGTTCGTCAGGCCTCGTTGGTT GGCGGGGTAAGAAGGCCAGTTCTCGTGTTGACCCTGACTTCCATCACATTAATGAGCAAT CTGGTAGATCGCTTACTGTATGCATTGGCATTTGCGGTACTCTTTCCTCTGGTATTGAAT TCATTTCAATGTGGGAGGAGGCGGTTCGTGCACCTCTATGTGACTTTTATGCTATGGAAT GGGAAACTGGGTTATTACGTTGTTTGGGTCGCATGTCTCAGCTTATGTCAGAGCAGCCCT TTTCCGATAGTGCAGCTCGTCTTCAGGAGAAGTTGGCACCTAATAATGCTTTGGTACCTG TTATACAATGGCCATTACCGTTAATCCACTTTGCTCAGCCTTTTGAGAATGCGTTTACTA TTGTTAATCAGAAGTCCATTTTTTATGGTGCCACATTAGCTCAGGCTATTATGGACCGTC ATGCGGTGGGTGAGCGTCCTATATCCCTTCTGGGATACAGTGTGGGTGCTCGTGTGATTT TCCATGCTCTTTTGAAGCTGTATGACAAGCAGAAGCTGAGTATAATAAAGGATGTTGTTC TTATGGGTCTCCCTGTAATCGTTGATACTAGTGAATGGTTCCAGTGCAGCAGTGTAGTTG CCGGTCGTTTGATCAATGTCTATTCACGTCATGACTGGCAGCTGGGTTACATTTACCGTG ACATAGAGTTTGGTCAGTCAGTTGCTGGACTACGTCCTGTAACTTCTGAGCGTGTTGAGA ATTACGATGCCACTGACTTTATTAAGGGTCACCATAGTTACATGTCCAAAATATCGGATA TTCTAACTTTAGTGCACATTGATTTATGA
  • Download Fasta

  • Fasta :-

    MSRFHFRRSQRDITSRHGVVITRGMERDLLNGSVDLQVLDSEECQALTNTLQVLIDTAEV NSTSDNDVLHGCNNTVITYSQQIVQQLSERRYKERLAGISVANSVQYIRFKPGSLRELPE ELLSSIVSVLVSLIVEHIASSRNEDQDYLLKWAGVVIRRIGKLLQVNEILLDALLKPITQ YSMLRALSVDMNTLVNRQMHLDIILEQLSLLQPDLDEEFKRNVEEARDYLNSTDVGNVIR RPSMGIFNSISRKINRVLTRAMEPTESSGHRDSESAERTSSIDGVVETCESEVEEVAEDP DFEDADAKSDINLNDELLLDTVPARAVLLRNLVTGYIMSGHNDSRVQLLFQEFSSALGMS KHTVLALETYIAAELVSAIHSSNTGTTKKVTRNLKIAAVAAGGGALIALSAGVASPAVAA GIAVLGIGGGGMSGYLSTTEEAELLASIFGVGSSGLVGWRGKKASSRVDPDFHHINEQSG RSLTVCIGICGTLSSGIEFISMWEEAVRAPLCDFYAMEWETGLLRCLGRMSQLMSEQPFS DSAARLQEKLAPNNALVPVIQWPLPLIHFAQPFENAFTIVNQKSIFYGATLAQAIMDRHA VGERPISLLGYSVGARVIFHALLKLYDKQKLSIIKDVVLMGLPVIVDTSEWFQCSSVVAG RLINVYSRHDWQLGYIYRDIEFGQSVAGLRPVTSERVENYDATDFIKGHHSYMSKISDIL TLVHIDL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_IV00203088 SVQQLSERRY0.991unspBBOV_IV00203088 SVQQLSERRY0.991unspBBOV_IV00203088 SVQQLSERRY0.991unspBBOV_IV002030114 SFKPGSLREL0.995unspBBOV_IV002030273 SGHRDSESAE0.995unspBBOV_IV002030280 SAERTSSIDG0.998unspBBOV_IV002030437 SSGYLSTTEE0.992unspBBOV_IV002030466 SKKASSRVDP0.998unspBBOV_IV0020309 SHFRRSQRDI0.998unspBBOV_IV00203062 SAEVNSTSDN0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India