BBOV_IV004330 | DegP protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
BBOV_IV004330OTHER0.5582880.0046000.437111
No Results

  • Fasta :-

    >BBOV_IV004330 MAYSTSALYVRLLSQNVKPAASCYTVFGTGNCFHHAKVHKHLASETDASHDLQFYDYRSH QLLKRSFGSIVKIYCDSTDPNYAQPWQMRRQLKSIGSGFAISNRMVLTNAHCVSWHNRCL LRKHGSTIKFPGRIVAIGHECDLAIIHVDSEEFWEGVEPLELGEVPSLHDAVTVVGYPAG GDNLCITSGVVSRVDVTTYAHSNFRLLCAQIDAAINAGNSGGPALKDGKVIGVAFQAYDE AQNIGYIIPTSIVRQFLRQLEIHNRYTGFVTIGITYQLLENPALRSFVGLDQINASELPE GITATGILVCQCDKVPRPGDRLQTRDVILAINGHDVADDGTVHFRDVERVHLAYALTNKF TGDPCEVVVLRDGVVKTLVVHLQRPSYLVPEHQWEVMPRYYIFGGLVFVPLTMEYLKDEF GKKFYERAPSALLKPLSDIFADESGQEVVVLSQILASDITVGYDFRNVRLEAVNGHSVRN LKHLEYLLQNTLRDSPYLTFKFDGEVILVLDRIKAEELHPLILEQHAIPAHKSREL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV004330.fa Sequence name : BBOV_IV004330 Sequence length : 536 VALUES OF COMPUTED PARAMETERS Coef20 : 4.374 CoefTot : -0.913 ChDiff : -9 ZoneTo : 44 KR : 4 DE : 0 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.188 1.259 0.086 0.648 MesoH : -0.360 0.412 -0.251 0.275 MuHd_075 : 21.365 21.019 8.967 5.374 MuHd_095 : 26.652 16.278 6.706 7.164 MuHd_100 : 27.269 19.755 7.801 7.680 MuHd_105 : 28.971 23.856 9.121 8.099 Hmax_075 : 9.900 11.900 1.902 4.050 Hmax_095 : 12.337 10.938 1.744 4.384 Hmax_100 : 14.200 17.300 2.640 6.000 Hmax_105 : 10.500 15.800 2.577 4.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0857 0.9143 DFMC : 0.1017 0.8983 This protein is probably imported in chloroplast. f(Ser) = 0.1136 f(Arg) = 0.0227 CMi = 1.11607 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 536 BBOV_IV004330 MAYSTSALYVRLLSQNVKPAASCYTVFGTGNCFHHAKVHKHLASETDASHDLQFYDYRSHQLLKRSFGSIVKIYCDSTDP 80 NYAQPWQMRRQLKSIGSGFAISNRMVLTNAHCVSWHNRCLLRKHGSTIKFPGRIVAIGHECDLAIIHVDSEEFWEGVEPL 160 ELGEVPSLHDAVTVVGYPAGGDNLCITSGVVSRVDVTTYAHSNFRLLCAQIDAAINAGNSGGPALKDGKVIGVAFQAYDE 240 AQNIGYIIPTSIVRQFLRQLEIHNRYTGFVTIGITYQLLENPALRSFVGLDQINASELPEGITATGILVCQCDKVPRPGD 320 RLQTRDVILAINGHDVADDGTVHFRDVERVHLAYALTNKFTGDPCEVVVLRDGVVKTLVVHLQRPSYLVPEHQWEVMPRY 400 YIFGGLVFVPLTMEYLKDEFGKKFYERAPSALLKPLSDIFADESGQEVVVLSQILASDITVGYDFRNVRLEAVNGHSVRN 480 LKHLEYLLQNTLRDSPYLTFKFDGEVILVLDRIKAEELHPLILEQHAIPAHKSREL 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV004330 11 TSALYVR|LL 0.107 . BBOV_IV004330 18 LLSQNVK|PA 0.074 . BBOV_IV004330 37 NCFHHAK|VH 0.062 . BBOV_IV004330 40 HHAKVHK|HL 0.083 . BBOV_IV004330 58 LQFYDYR|SH 0.098 . BBOV_IV004330 64 RSHQLLK|RS 0.065 . BBOV_IV004330 65 SHQLLKR|SF 0.346 . BBOV_IV004330 72 SFGSIVK|IY 0.059 . BBOV_IV004330 89 AQPWQMR|RQ 0.093 . BBOV_IV004330 90 QPWQMRR|QL 0.166 . BBOV_IV004330 93 QMRRQLK|SI 0.491 . BBOV_IV004330 104 GFAISNR|MV 0.138 . BBOV_IV004330 118 CVSWHNR|CL 0.120 . BBOV_IV004330 122 HNRCLLR|KH 0.095 . BBOV_IV004330 123 NRCLLRK|HG 0.099 . BBOV_IV004330 129 KHGSTIK|FP 0.072 . BBOV_IV004330 133 TIKFPGR|IV 0.140 . BBOV_IV004330 193 TSGVVSR|VD 0.089 . BBOV_IV004330 205 YAHSNFR|LL 0.112 . BBOV_IV004330 226 SGGPALK|DG 0.070 . BBOV_IV004330 229 PALKDGK|VI 0.068 . BBOV_IV004330 254 IPTSIVR|QF 0.080 . BBOV_IV004330 258 IVRQFLR|QL 0.109 . BBOV_IV004330 265 QLEIHNR|YT 0.130 . BBOV_IV004330 285 LENPALR|SF 0.109 . BBOV_IV004330 314 LVCQCDK|VP 0.057 . BBOV_IV004330 317 QCDKVPR|PG 0.087 . BBOV_IV004330 321 VPRPGDR|LQ 0.076 . BBOV_IV004330 325 GDRLQTR|DV 0.222 . BBOV_IV004330 345 DGTVHFR|DV 0.197 . BBOV_IV004330 349 HFRDVER|VH 0.076 . BBOV_IV004330 359 AYALTNK|FT 0.074 . BBOV_IV004330 371 CEVVVLR|DG 0.088 . BBOV_IV004330 376 LRDGVVK|TL 0.065 . BBOV_IV004330 384 LVVHLQR|PS 0.081 . BBOV_IV004330 399 QWEVMPR|YY 0.134 . BBOV_IV004330 417 LTMEYLK|DE 0.067 . BBOV_IV004330 422 LKDEFGK|KF 0.067 . BBOV_IV004330 423 KDEFGKK|FY 0.126 . BBOV_IV004330 427 GKKFYER|AP 0.117 . BBOV_IV004330 434 APSALLK|PL 0.117 . BBOV_IV004330 466 TVGYDFR|NV 0.098 . BBOV_IV004330 469 YDFRNVR|LE 0.167 . BBOV_IV004330 479 VNGHSVR|NL 0.103 . BBOV_IV004330 482 HSVRNLK|HL 0.146 . BBOV_IV004330 493 LLQNTLR|DS 0.093 . BBOV_IV004330 501 SPYLTFK|FD 0.087 . BBOV_IV004330 512 VILVLDR|IK 0.070 . BBOV_IV004330 514 LVLDRIK|AE 0.057 . BBOV_IV004330 532 HAIPAHK|SR 0.080 . BBOV_IV004330 534 IPAHKSR|EL 0.155 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV004330 ATGGCGTATTCTACATCTGCATTGTATGTTCGACTACTATCGCAAAATGTGAAGCCGGCG GCAAGTTGTTATACTGTGTTCGGCACTGGTAATTGCTTCCACCACGCCAAGGTACACAAA CACCTCGCGAGTGAAACTGATGCATCCCATGATCTGCAATTCTATGATTACCGATCGCAT CAGTTACTGAAGCGTTCTTTCGGGAGTATTGTAAAGATATATTGTGATTCTACAGATCCC AATTATGCTCAACCATGGCAGATGCGTCGTCAGCTAAAGTCCATAGGCTCGGGTTTTGCT ATATCTAATCGTATGGTACTCACCAATGCCCATTGTGTATCGTGGCACAACAGATGTCTA TTACGTAAGCATGGCTCCACTATTAAATTCCCAGGCCGCATAGTTGCGATAGGCCATGAG TGTGATTTAGCCATTATTCACGTGGATTCAGAAGAGTTTTGGGAGGGCGTTGAGCCTTTA GAGCTTGGCGAGGTGCCAAGTTTACATGATGCTGTTACTGTGGTTGGTTACCCAGCTGGT GGTGACAATCTATGTATCACCTCGGGTGTTGTTTCTCGGGTAGATGTCACCACATATGCT CATTCCAACTTTCGTTTGTTATGTGCTCAAATTGACGCTGCTATAAATGCTGGCAATTCC GGTGGTCCTGCTTTGAAGGATGGCAAGGTCATCGGTGTTGCTTTCCAGGCGTACGATGAA GCCCAGAACATTGGTTACATAATTCCAACATCAATTGTGCGTCAATTTTTACGTCAACTT GAAATTCACAACCGTTACACTGGATTTGTCACTATCGGTATAACATACCAGTTATTGGAG AATCCCGCTCTCCGATCATTTGTTGGTTTGGACCAGATTAATGCTTCTGAACTTCCCGAA GGTATAACTGCTACTGGCATATTAGTATGCCAGTGTGATAAGGTTCCTAGGCCCGGCGAC CGGCTTCAAACTAGGGATGTTATTTTAGCCATTAATGGCCATGACGTGGCTGACGACGGC ACTGTGCACTTTAGGGACGTGGAACGAGTTCACCTGGCATATGCACTGACTAATAAGTTT ACTGGTGACCCTTGCGAGGTGGTTGTGCTTCGTGATGGCGTGGTGAAGACCCTGGTTGTT CATTTACAAAGGCCTAGTTACTTGGTACCGGAACACCAGTGGGAGGTCATGCCTCGTTAC TATATATTCGGTGGCCTTGTATTTGTACCGCTGACTATGGAGTACCTTAAGGATGAGTTT GGTAAAAAGTTTTACGAGCGAGCTCCGAGTGCATTGCTGAAGCCATTGAGTGATATATTT GCTGACGAATCAGGCCAGGAGGTGGTAGTACTAAGCCAGATTCTAGCGTCAGACATAACT GTTGGTTACGACTTTAGAAATGTCCGTTTAGAGGCTGTTAATGGTCATTCCGTGAGGAAC TTGAAGCATCTTGAGTACTTGTTGCAAAACACCCTCAGGGACTCACCTTACCTCACTTTT AAATTCGACGGCGAGGTCATTCTAGTGTTAGACCGCATTAAAGCGGAGGAGTTGCATCCA CTTATTTTGGAGCAACATGCAATTCCAGCTCACAAATCTCGTGAATTATAG
  • Download Fasta

  • Fasta :-

    MAYSTSALYVRLLSQNVKPAASCYTVFGTGNCFHHAKVHKHLASETDASHDLQFYDYRSH QLLKRSFGSIVKIYCDSTDPNYAQPWQMRRQLKSIGSGFAISNRMVLTNAHCVSWHNRCL LRKHGSTIKFPGRIVAIGHECDLAIIHVDSEEFWEGVEPLELGEVPSLHDAVTVVGYPAG GDNLCITSGVVSRVDVTTYAHSNFRLLCAQIDAAINAGNSGGPALKDGKVIGVAFQAYDE AQNIGYIIPTSIVRQFLRQLEIHNRYTGFVTIGITYQLLENPALRSFVGLDQINASELPE GITATGILVCQCDKVPRPGDRLQTRDVILAINGHDVADDGTVHFRDVERVHLAYALTNKF TGDPCEVVVLRDGVVKTLVVHLQRPSYLVPEHQWEVMPRYYIFGGLVFVPLTMEYLKDEF GKKFYERAPSALLKPLSDIFADESGQEVVVLSQILASDITVGYDFRNVRLEAVNGHSVRN LKHLEYLLQNTLRDSPYLTFKFDGEVILVLDRIKAEELHPLILEQHAIPAHKSREL

    No Results
No Results
No Results
IDSitePeptideScoreMethod
BBOV_IV004330495 STLRDSPYLT0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India