BBOV_IV009000 | proteasome epsilon subunit, putative

_IDPredictionOTHERSPmTPCS_Position
BBOV_IV009000OTHER0.9998530.0001320.000016
No Results

  • Fasta :-

    >BBOV_IV009000 MIDIDRAVPGDESLAYSESATDLLKNGFQLYPLEKINYIKSMSKASGQDIFNFKKGTTTL GFVFNKGVILAVDSRASMGSIIATQNISKVIEINSYLLGTMAGGAADCTYWERHVAKLCR LHELRNQERITVAHASQILANIFFYFRGYGLSAGTMIAGWDKNKGPELFYVSDKGERVSG KLFSVGSGSLFAYGVIDQHYRSDMTLDEAVELGKRAIYQAAHRDAYSGGYVNLYHVHENG WTKIVDYQDINELHYSYCEQKNIPGDSM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV009000.fa Sequence name : BBOV_IV009000 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 3.503 CoefTot : 0.000 ChDiff : -3 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.165 1.312 0.099 0.580 MesoH : -0.270 0.366 -0.310 0.232 MuHd_075 : 13.097 6.493 3.242 2.716 MuHd_095 : 13.134 7.221 2.283 3.013 MuHd_100 : 6.138 10.148 0.848 3.534 MuHd_105 : 12.963 13.827 3.187 4.240 Hmax_075 : 0.817 7.700 -0.813 3.290 Hmax_095 : -7.400 4.100 -2.905 2.380 Hmax_100 : -5.100 9.100 -1.896 3.200 Hmax_105 : -0.117 9.625 -0.468 3.360 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9307 0.0693 DFMC : 0.9591 0.0409
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 BBOV_IV009000 MIDIDRAVPGDESLAYSESATDLLKNGFQLYPLEKINYIKSMSKASGQDIFNFKKGTTTLGFVFNKGVILAVDSRASMGS 80 IIATQNISKVIEINSYLLGTMAGGAADCTYWERHVAKLCRLHELRNQERITVAHASQILANIFFYFRGYGLSAGTMIAGW 160 DKNKGPELFYVSDKGERVSGKLFSVGSGSLFAYGVIDQHYRSDMTLDEAVELGKRAIYQAAHRDAYSGGYVNLYHVHENG 240 WTKIVDYQDINELHYSYCEQKNIPGDSM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV009000 6 -MIDIDR|AV 0.101 . BBOV_IV009000 25 SATDLLK|NG 0.057 . BBOV_IV009000 35 QLYPLEK|IN 0.061 . BBOV_IV009000 40 EKINYIK|SM 0.094 . BBOV_IV009000 44 YIKSMSK|AS 0.077 . BBOV_IV009000 54 QDIFNFK|KG 0.064 . BBOV_IV009000 55 DIFNFKK|GT 0.116 . BBOV_IV009000 66 LGFVFNK|GV 0.087 . BBOV_IV009000 75 ILAVDSR|AS 0.100 . BBOV_IV009000 89 ATQNISK|VI 0.060 . BBOV_IV009000 113 DCTYWER|HV 0.091 . BBOV_IV009000 117 WERHVAK|LC 0.072 . BBOV_IV009000 120 HVAKLCR|LH 0.080 . BBOV_IV009000 125 CRLHELR|NQ 0.094 . BBOV_IV009000 129 ELRNQER|IT 0.096 . BBOV_IV009000 147 NIFFYFR|GY 0.096 . BBOV_IV009000 162 MIAGWDK|NK 0.077 . BBOV_IV009000 164 AGWDKNK|GP 0.061 . BBOV_IV009000 174 LFYVSDK|GE 0.069 . BBOV_IV009000 177 VSDKGER|VS 0.082 . BBOV_IV009000 181 GERVSGK|LF 0.085 . BBOV_IV009000 201 VIDQHYR|SD 0.110 . BBOV_IV009000 214 EAVELGK|RA 0.060 . BBOV_IV009000 215 AVELGKR|AI 0.136 . BBOV_IV009000 223 IYQAAHR|DA 0.124 . BBOV_IV009000 243 HENGWTK|IV 0.089 . BBOV_IV009000 261 YSYCEQK|NI 0.060 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV009000 AGGCACAATAGTCGCATAAGTGTCATTATACGGCTTCCATATGTTTTCTTGTACTTGACA GGGTGTGGGCATAATGATAGACATCGACAGAGCTGTACCGGGCGATGAATCCCTGGCGTA TTCTGAAAGCGCTACCGACTTGTTAAAAAATGGATTTCAATTATATCCGTTAGAAAAGAT TAACTACATCAAGTCTATGAGTAAAGCAAGTGGCCAAGATATTTTTAATTTTAAAAAGGG TACCACAACATTAGGTTTCGTGTTTAATAAGGGTGTTATACTTGCTGTCGATTCGAGAGC TTCAATGGGTTCTATCATCGCCACTCAGAACATCAGCAAGGTTATTGAAATAAACTCTTA TTTATTAGGTACTATGGCCGGAGGTGCTGCTGATTGTACTTACTGGGAGCGTCATGTAGC TAAATTATGCAGGTTACATGAGCTTCGTAACCAGGAGAGGATTACTGTTGCCCACGCATC ACAAATTTTGGCAAACATTTTCTTTTACTTCCGTGGTTATGGACTATCAGCCGGTACCAT GATTGCTGGTTGGGACAAGAACAAGGGTCCTGAATTATTCTATGTTAGTGACAAGGGTGA ACGTGTAAGCGGGAAGCTTTTTAGCGTTGGCTCTGGTTCCCTATTTGCTTACGGTGTGAT AGATCAACACTACCGGAGTGACATGACCCTTGATGAAGCTGTGGAACTAGGCAAACGTGC TATTTACCAGGCCGCACATAGGGATGCATATTCTGGAGGTTACGTTAATTTGTACCATGT TCACGAAAACGGTTGGACAAAGATTGTGGACTACCAGGATATCAATGAGTTGCACTATTC CTATTGTGAGCAAAAGAACATCCCTGGTGATTCCATGTAATTATATAGGATGATAAACCA AGGGTTAACATATCCATTGAGAGGTAGAGATGGCGGGATTAAACGCATATACCTGTCTAC CATAGCGTTGCACATGATATGTTCAATGAACACAGCGTCATTAATCAGATATAATAGATT GTTCGTGTGATTTATTAAGCTTACTGGTTAATAATTATGCTCATTAGCATGTACCTCAAA GTGTGGTGGAGGCAACGACGGTCGTACAGTGTCTTATGCACTATCTCGTCTTTGTAAA
  • Download Fasta

  • Fasta :-

    MIDIDRAVPGDESLAYSESATDLLKNGFQLYPLEKINYIKSMSKASGQDIFNFKKGTTTL GFVFNKGVILAVDSRASMGSIIATQNISKVIEINSYLLGTMAGGAADCTYWERHVAKLCR LHELRNQERITVAHASQILANIFFYFRGYGLSAGTMIAGWDKNKGPELFYVSDKGERVSG KLFSVGSGSLFAYGVIDQHYRSDMTLDEAVELGKRAIYQAAHRDAYSGGYVNLYHVHENG WTKIVDYQDINELHYSYCEQKNIPGDSM

  • title: active site
  • coordinates: T57,D73,R75,K89,S187,D224,S227,G228
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_IV00900046 SMSKASGQDI0.991unspBBOV_IV009000179 SGERVSGKLF0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India