Chro.10054 | 20S proteasome beta subunit D2 (PBD2)

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.10054	OTHER	0.697505	0.003536	0.298958

No Results

Fasta :-
>Chro.10054 MQFGEYIKCNLNLYRLRNGVQLSTTATANFTRNELAELLRSDPHNVNILIGGYTKEEGAK LYWMDELASLGNVNNAAHGYGKF
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/193 Sequence name : 193 Sequence length : 83 VALUES OF COMPUTED PARAMETERS Coef20 : 3.742 CoefTot : -0.853 ChDiff : 0 ZoneTo : 33 KR : 4 DE : 1 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : -0.388 0.335 -0.436 0.265 MesoH : -1.400 -0.335 -0.649 0.036 MuHd_075 : 26.218 15.362 6.103 6.110 MuHd_095 : 39.104 19.963 10.643 8.142 MuHd_100 : 35.210 20.154 9.375 8.048 MuHd_105 : 31.894 20.216 8.811 7.237 Hmax_075 : 9.100 9.800 0.165 3.640 Hmax_095 : 13.100 8.200 1.646 3.600 Hmax_100 : 13.500 10.700 1.996 4.270 Hmax_105 : 14.583 15.200 4.138 5.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4178 0.5822 DFMC : 0.4997 0.5003 This protein is probably imported in mitochondria. f(Ser) = 0.0303 f(Arg) = 0.0909 CMi = 0.15361 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 83 Chro.10054 MQFGEYIKCNLNLYRLRNGVQLSTTATANFTRNELAELLRSDPHNVNILIGGYTKEEGAKLYWMDELASLGNVNNAAHGY 80 GKF 160 ................................................................................ 80 ... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10054 8 QFGEYIK|CN 0.053 . Chro.10054 15 CNLNLYR|LR 0.084 . Chro.10054 17 LNLYRLR|NG 0.071 . Chro.10054 32 ATANFTR|NE 0.085 . Chro.10054 40 ELAELLR|SD 0.097 . Chro.10054 55 LIGGYTK|EE 0.070 . Chro.10054 60 TKEEGAK|LY 0.066 . Chro.10054 82 AAHGYGK|F- 0.074 . ____________________________^_________________

Fasta :-
>Chro.10054 ATGCAATTTGGAGAATATATTAAATGTAATTTGAATTTATACAGACTCAGAAATGGAGTA CAACTCAGTACTACAGCTACAGCTAACTTCACGAGAAATGAACTTGCAGAATTACTTAGA TCAGATCCCCACAATGTAAATATTTTGATTGGTGGATATACTAAAGAGGAAGGAGCAAAG CTTTACTGGATGGACGAACTAGCATCTTTAGGAAATGTTAACAATGCTGCTCACGGATAC GGTAAGTTTTAA
Download Fasta

Fasta :-

MQFGEYIKCNLNLYRLRNGVQLSTTATANFTRNELAELLRSDPHNVNILIGGYTKEEGAK LYWMDELASLGNVNNAAHGYGKF

Chro.10054 | 20S proteasome beta subunit D2 (PBD2)

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.10054

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India