Chro.10129 | hypothetical protein

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  • Fasta :-

    >Chro.10129 MYSWMYDDVDIIISISARFDLANSIITRFISDEQYEKLKNNELESVEIIPRDNIPRKITL ECINKRNLVDYNMLKDSKEYKVFPTNTWHKGRYCPSTSKFYLRLNFK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/755 Sequence name : 755 Sequence length : 107 VALUES OF COMPUTED PARAMETERS Coef20 : 4.077 CoefTot : -0.202 ChDiff : 2 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.294 1.329 -0.004 0.422 MesoH : -2.263 -0.292 -0.768 -0.047 MuHd_075 : 16.961 6.736 3.617 3.240 MuHd_095 : 31.675 17.904 6.345 6.306 MuHd_100 : 29.941 17.418 6.944 5.946 MuHd_105 : 21.740 13.996 6.281 4.209 Hmax_075 : 4.550 9.567 -0.534 4.013 Hmax_095 : 14.963 14.612 2.360 5.145 Hmax_100 : 15.500 14.900 2.430 5.390 Hmax_105 : 14.117 15.167 2.676 5.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9313 0.0687 DFMC : 0.9692 0.0308
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 107 Chro.10129 MYSWMYDDVDIIISISARFDLANSIITRFISDEQYEKLKNNELESVEIIPRDNIPRKITLECINKRNLVDYNMLKDSKEY 80 KVFPTNTWHKGRYCPSTSKFYLRLNFK 160 ................................................................................ 80 ........................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10129 18 IISISAR|FD 0.113 . Chro.10129 28 ANSIITR|FI 0.180 . Chro.10129 37 SDEQYEK|LK 0.060 . Chro.10129 39 EQYEKLK|NN 0.061 . Chro.10129 51 SVEIIPR|DN 0.092 . Chro.10129 56 PRDNIPR|KI 0.088 . Chro.10129 57 RDNIPRK|IT 0.096 . Chro.10129 65 TLECINK|RN 0.057 . Chro.10129 66 LECINKR|NL 0.151 . Chro.10129 75 VDYNMLK|DS 0.061 . Chro.10129 78 NMLKDSK|EY 0.055 . Chro.10129 81 KDSKEYK|VF 0.073 . Chro.10129 90 PTNTWHK|GR 0.059 . Chro.10129 92 NTWHKGR|YC 0.089 . Chro.10129 99 YCPSTSK|FY 0.053 . Chro.10129 103 TSKFYLR|LN 0.115 . Chro.10129 107 YLRLNFK|-- 0.064 . ____________________________^_________________

  • Fasta :-

    >Chro.10129 ATGTATTCATGGATGTATGATGATGTTGACATTATTATTAGTATCTCAGCTAGATTTGAC TTAGCTAATTCAATTATAACTAGATTTATATCAGATGAACAGTATGAAAAATTAAAGAAT AATGAGCTTGAATCTGTTGAAATTATTCCAAGAGATAATATTCCAAGAAAGATTACTCTT GAATGTATAAATAAAAGAAATTTGGTGGATTATAATATGCTTAAAGACAGTAAAGAATAC AAAGTATTTCCTACTAATACATGGCACAAAGGACGATATTGTCCCAGTACAAGTAAGTTC TATTTAAGACTTAACTTTAAGTAA
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  • Fasta :-

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IDSitePeptideScoreMethod
Chro.1012931 STRFISDEQY0.991unsp

Chro.10129      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India