Chro.20043 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
Chro.20043OTHER0.9995960.0002200.000184
No Results

  • Fasta :-

    >Chro.20043 MFKVTREELGEDIDLLEYLSDSTYDGEETEEYISKRCNTIEEPLTLSDSFSKSFVIFGLP CIGSDKYERFLKALRTIINQTLKMMRVEYDENFLLDVPQDEDGGTKGVAILTFSNSFQAE TVCQALSKAPFDKQTKFNTVMFDDVKRIIEQDESAPGHFETLYPPPTLFSRDDVRNWLMG PRCREQFVIRYQSATEIYSFDSIQRIPELIYDGERAKGGKRVWTDFSVQWSPMGSYLVTF HRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEEYLLTWDGSSPDSRFDKAVKVWHVLSG RLLRCFSTPTMTLNNNGTDSGLHFLWSPTGNYLAHCSDKGELFVYESSTMTLVEDPATGN KNPLKYPLQFFDWSPEEDNLSIWCPERGDTPGRLTLLSIKNRKELAIKNVFNVREASVHW QPKGQYMCLKALVSRKAGKKAKKEYTQLEIFRVKEKNVPVDTVHIEGVTVKCLSWESSNR FAIVVVDDVTRSQTLRFYQVNATQTDFVCSYYLTSPVDTIKWSPLGSYFVLGGSGGNLTF CQLTNENKFDILQKDEHFMCNWIQWDPTGRYVTTAFQSKLAEGAYKYSTETGFIVWSFQG RQLYNSPLETFYQFIWRPHPPSLLSQEKFDEIPRKLKDYSKKFDAEDEAVRSEKRNIVLQ KRKVNEDEFNAILQKIQEWKVQQPLYKEWLAAKEVLLNSLQWEEQEEVIEIELETIQEVI STEV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/286 Sequence name : 286 Sequence length : 724 VALUES OF COMPUTED PARAMETERS Coef20 : 3.415 CoefTot : 0.022 ChDiff : -21 ZoneTo : 6 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.124 0.197 0.504 MesoH : -0.330 0.213 -0.280 0.184 MuHd_075 : 32.313 14.125 9.400 4.051 MuHd_095 : 31.496 19.927 8.114 5.579 MuHd_100 : 33.544 20.422 8.615 5.601 MuHd_105 : 26.749 15.880 7.051 4.147 Hmax_075 : 2.333 8.400 -0.302 3.395 Hmax_095 : -0.350 9.188 -1.535 3.281 Hmax_100 : 7.800 12.600 0.394 4.490 Hmax_105 : 4.783 11.667 -0.105 4.142 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9272 0.0728 DFMC : 0.8783 0.1217
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 724 Chro.20043 MFKVTREELGEDIDLLEYLSDSTYDGEETEEYISKRCNTIEEPLTLSDSFSKSFVIFGLPCIGSDKYERFLKALRTIINQ 80 TLKMMRVEYDENFLLDVPQDEDGGTKGVAILTFSNSFQAETVCQALSKAPFDKQTKFNTVMFDDVKRIIEQDESAPGHFE 160 TLYPPPTLFSRDDVRNWLMGPRCREQFVIRYQSATEIYSFDSIQRIPELIYDGERAKGGKRVWTDFSVQWSPMGSYLVTF 240 HRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEEYLLTWDGSSPDSRFDKAVKVWHVLSGRLLRCFSTPTMTLNNNGTDS 320 GLHFLWSPTGNYLAHCSDKGELFVYESSTMTLVEDPATGNKNPLKYPLQFFDWSPEEDNLSIWCPERGDTPGRLTLLSIK 400 NRKELAIKNVFNVREASVHWQPKGQYMCLKALVSRKAGKKAKKEYTQLEIFRVKEKNVPVDTVHIEGVTVKCLSWESSNR 480 FAIVVVDDVTRSQTLRFYQVNATQTDFVCSYYLTSPVDTIKWSPLGSYFVLGGSGGNLTFCQLTNENKFDILQKDEHFMC 560 NWIQWDPTGRYVTTAFQSKLAEGAYKYSTETGFIVWSFQGRQLYNSPLETFYQFIWRPHPPSLLSQEKFDEIPRKLKDYS 640 KKFDAEDEAVRSEKRNIVLQKRKVNEDEFNAILQKIQEWKVQQPLYKEWLAAKEVLLNSLQWEEQEEVIEIELETIQEVI 720 STEV 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20043 3 ----MFK|VT 0.067 . Chro.20043 6 -MFKVTR|EE 0.074 . Chro.20043 35 TEEYISK|RC 0.070 . Chro.20043 36 EEYISKR|CN 0.235 . Chro.20043 52 LSDSFSK|SF 0.068 . Chro.20043 66 PCIGSDK|YE 0.056 . Chro.20043 69 GSDKYER|FL 0.105 . Chro.20043 72 KYERFLK|AL 0.167 . Chro.20043 75 RFLKALR|TI 0.073 . Chro.20043 83 IINQTLK|MM 0.063 . Chro.20043 86 QTLKMMR|VE 0.075 . Chro.20043 106 DEDGGTK|GV 0.070 . Chro.20043 128 VCQALSK|AP 0.072 . Chro.20043 133 SKAPFDK|QT 0.081 . Chro.20043 136 PFDKQTK|FN 0.066 . Chro.20043 146 VMFDDVK|RI 0.060 . Chro.20043 147 MFDDVKR|II 0.245 . Chro.20043 171 PPTLFSR|DD 0.087 . Chro.20043 175 FSRDDVR|NW 0.089 . Chro.20043 182 NWLMGPR|CR 0.075 . Chro.20043 184 LMGPRCR|EQ 0.095 . Chro.20043 190 REQFVIR|YQ 0.131 . Chro.20043 205 SFDSIQR|IP 0.080 . Chro.20043 215 LIYDGER|AK 0.095 . Chro.20043 217 YDGERAK|GG 0.067 . Chro.20043 220 ERAKGGK|RV 0.085 . Chro.20043 221 RAKGGKR|VW 0.133 . Chro.20043 242 YLVTFHR|QG 0.077 . Chro.20043 255 GGDDWDK|KI 0.060 . Chro.20043 256 GDDWDKK|IR 0.085 . Chro.20043 258 DWDKKIR|FE 0.099 . Chro.20043 262 KIRFEHK|DV 0.107 . Chro.20043 265 FEHKDVK|FI 0.079 . Chro.20043 287 GSSPDSR|FD 0.145 . Chro.20043 290 PDSRFDK|AV 0.260 . Chro.20043 293 RFDKAVK|VW 0.056 . Chro.20043 301 WHVLSGR|LL 0.070 . Chro.20043 304 LSGRLLR|CF 0.322 . Chro.20043 339 LAHCSDK|GE 0.067 . Chro.20043 361 DPATGNK|NP 0.056 . Chro.20043 365 GNKNPLK|YP 0.078 . Chro.20043 387 SIWCPER|GD 0.122 . Chro.20043 393 RGDTPGR|LT 0.079 . Chro.20043 400 LTLLSIK|NR 0.050 . Chro.20043 402 LLSIKNR|KE 0.101 . Chro.20043 403 LSIKNRK|EL 0.082 . Chro.20043 408 RKELAIK|NV 0.080 . Chro.20043 414 KNVFNVR|EA 0.099 . Chro.20043 423 SVHWQPK|GQ 0.086 . Chro.20043 430 GQYMCLK|AL 0.065 . Chro.20043 435 LKALVSR|KA 0.159 . Chro.20043 436 KALVSRK|AG 0.083 . Chro.20043 439 VSRKAGK|KA 0.086 . Chro.20043 440 SRKAGKK|AK 0.102 . Chro.20043 442 KAGKKAK|KE 0.088 . Chro.20043 443 AGKKAKK|EY 0.113 . Chro.20043 452 TQLEIFR|VK 0.092 . Chro.20043 454 LEIFRVK|EK 0.063 . Chro.20043 456 IFRVKEK|NV 0.076 . Chro.20043 471 IEGVTVK|CL 0.070 . Chro.20043 480 SWESSNR|FA 0.137 . Chro.20043 491 VVDDVTR|SQ 0.090 . Chro.20043 496 TRSQTLR|FY 0.143 . Chro.20043 521 SPVDTIK|WS 0.061 . Chro.20043 548 QLTNENK|FD 0.060 . Chro.20043 554 KFDILQK|DE 0.065 . Chro.20043 570 QWDPTGR|YV 0.160 . Chro.20043 579 TTAFQSK|LA 0.081 . Chro.20043 586 LAEGAYK|YS 0.074 . Chro.20043 601 VWSFQGR|QL 0.115 . Chro.20043 617 FYQFIWR|PH 0.089 . Chro.20043 628 SLLSQEK|FD 0.067 . Chro.20043 634 KFDEIPR|KL 0.071 . Chro.20043 635 FDEIPRK|LK 0.080 . Chro.20043 637 EIPRKLK|DY 0.238 . Chro.20043 641 KLKDYSK|KF 0.068 . Chro.20043 642 LKDYSKK|FD 0.121 . Chro.20043 651 AEDEAVR|SE 0.081 . Chro.20043 654 EAVRSEK|RN 0.107 . Chro.20043 655 AVRSEKR|NI 0.133 . Chro.20043 661 RNIVLQK|RK 0.061 . Chro.20043 662 NIVLQKR|KV 0.228 . Chro.20043 663 IVLQKRK|VN 0.092 . Chro.20043 675 FNAILQK|IQ 0.067 . Chro.20043 680 QKIQEWK|VQ 0.061 . Chro.20043 687 VQQPLYK|EW 0.066 . Chro.20043 693 KEWLAAK|EV 0.063 . ____________________________^_________________

  • Fasta :-

    >Chro.20043 ATGTTTAAAGTTACTCGTGAAGAATTAGGTGAAGATATTGATCTTTTGGAATATTTAAGT GACTCCACATATGATGGGGAGGAAACTGAAGAATATATTTCCAAGAGATGTAATACAATA GAAGAACCACTGACTTTATCAGACTCATTTTCTAAAAGCTTTGTTATTTTCGGACTTCCA TGTATTGGCTCAGATAAATATGAGAGATTTCTTAAAGCTCTTAGAACAATTATTAATCAA ACCCTTAAAATGATGAGAGTGGAGTATGACGAAAATTTTTTACTTGATGTACCTCAGGAT GAAGATGGAGGCACAAAAGGAGTTGCTATATTGACATTTTCGAATTCATTCCAAGCAGAA ACTGTTTGCCAAGCACTTTCAAAGGCACCATTTGATAAACAGACAAAATTTAATACAGTA ATGTTTGATGATGTAAAAAGAATTATTGAACAAGATGAATCAGCTCCAGGACACTTTGAA ACTCTATACCCACCACCGACTTTATTCAGTCGAGATGATGTAAGAAATTGGTTAATGGGG CCAAGATGTAGAGAACAATTTGTTATTAGATACCAAAGCGCAACTGAGATCTATTCATTT GATTCGATTCAAAGAATTCCTGAATTAATTTATGACGGTGAAAGAGCTAAAGGAGGGAAA AGAGTTTGGACAGATTTTTCTGTACAATGGAGTCCAATGGGTTCTTACTTAGTGACATTC CATCGTCAGGGTGTTGCACTTTGGGGAGGTGATGATTGGGATAAGAAGATTAGATTTGAA CACAAAGATGTTAAATTCATTGATTTCAGCCCAAATGAAGAGTACTTACTAACATGGGAT GGTTCTTCTCCAGATTCAAGGTTTGATAAGGCAGTAAAGGTATGGCATGTACTTTCTGGA CGACTTTTAAGATGCTTTTCCACACCAACTATGACACTTAACAATAATGGAACTGATAGT GGTTTACATTTCCTTTGGAGCCCAACTGGAAATTATCTTGCACATTGCTCTGATAAAGGA GAACTTTTCGTCTATGAATCTTCCACAATGACTCTTGTAGAAGATCCTGCTACAGGTAAT AAGAACCCATTAAAGTATCCACTTCAGTTCTTTGATTGGTCCCCTGAAGAAGACAACCTT TCAATTTGGTGTCCAGAAAGAGGAGATACACCAGGTAGACTCACTTTGCTTTCTATTAAG AATAGAAAGGAGTTGGCAATAAAGAATGTCTTTAATGTTAGAGAGGCATCTGTCCACTGG CAACCAAAAGGTCAGTATATGTGTCTTAAGGCTCTAGTTTCTAGAAAAGCTGGTAAAAAG GCAAAAAAAGAATATACTCAGCTTGAGATCTTTAGAGTAAAAGAGAAAAATGTTCCTGTT GATACTGTACATATTGAAGGTGTTACTGTCAAGTGCTTATCCTGGGAATCATCTAATAGA TTTGCCATTGTTGTTGTAGATGATGTTACAAGATCCCAAACACTGAGATTTTACCAAGTG AATGCAACACAAACTGACTTTGTATGCTCATATTATTTAACATCTCCTGTTGACACAATT AAATGGAGTCCACTTGGTAGCTATTTTGTTTTAGGTGGATCTGGAGGAAATTTAACATTC TGTCAACTCACAAATGAAAACAAATTTGATATCTTGCAAAAAGATGAGCATTTTATGTGT AACTGGATTCAATGGGATCCTACCGGTAGATATGTTACAACAGCTTTCCAATCAAAATTA GCTGAAGGTGCATATAAATACAGCACAGAAACAGGTTTCATAGTTTGGTCTTTCCAAGGT AGACAACTTTACAACTCACCATTGGAAACATTTTACCAATTTATTTGGAGGCCTCATCCC CCTTCACTTCTTTCACAAGAAAAGTTTGATGAAATTCCCAGAAAACTTAAAGATTACAGC AAAAAGTTTGATGCTGAAGATGAGGCTGTCAGATCTGAAAAGAGAAATATTGTTCTCCAA AAGAGAAAAGTCAACGAGGATGAATTCAATGCTATTCTCCAAAAGATTCAAGAATGGAAG GTTCAGCAACCACTTTACAAAGAATGGCTCGCAGCAAAAGAAGTCCTACTTAATTCCTTA CAATGGGAAGAACAAGAAGAAGTTATCGAGATTGAGCTTGAAACTATACAGGAAGTTATT TCCACTGAGGTTTAG
  • Download Fasta

  • Fasta :-

    MFKVTREELGEDIDLLEYLSDSTYDGEETEEYISKRCNTIEEPLTLSDSFSKSFVIFGLP CIGSDKYERFLKALRTIINQTLKMMRVEYDENFLLDVPQDEDGGTKGVAILTFSNSFQAE TVCQALSKAPFDKQTKFNTVMFDDVKRIIEQDESAPGHFETLYPPPTLFSRDDVRNWLMG PRCREQFVIRYQSATEIYSFDSIQRIPELIYDGERAKGGKRVWTDFSVQWSPMGSYLVTF HRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEEYLLTWDGSSPDSRFDKAVKVWHVLSG RLLRCFSTPTMTLNNNGTDSGLHFLWSPTGNYLAHCSDKGELFVYESSTMTLVEDPATGN KNPLKYPLQFFDWSPEEDNLSIWCPERGDTPGRLTLLSIKNRKELAIKNVFNVREASVHW QPKGQYMCLKALVSRKAGKKAKKEYTQLEIFRVKEKNVPVDTVHIEGVTVKCLSWESSNR FAIVVVDDVTRSQTLRFYQVNATQTDFVCSYYLTSPVDTIKWSPLGSYFVLGGSGGNLTF CQLTNENKFDILQKDEHFMCNWIQWDPTGRYVTTAFQSKLAEGAYKYSTETGFIVWSFQG RQLYNSPLETFYQFIWRPHPPSLLSQEKFDEIPRKLKDYSKKFDAEDEAVRSEKRNIVLQ KRKVNEDEFNAILQKIQEWKVQQPLYKEWLAAKEVLLNSLQWEEQEEVIEIELETIQEVI STEV

  • title: WD40 repeat
  • coordinates: F226-H261
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.20043515 SYYLTSPVDT0.99unspChro.20043515 SYYLTSPVDT0.99unspChro.20043515 SYYLTSPVDT0.99unspChro.20043606 SQLYNSPLET0.996unspChro.20043652 SEAVRSEKRN0.993unspChro.2004322 SYLSDSTYDG0.997unspChro.20043286 SSSPDSRFDK0.996unsp

Chro.20043      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India