Chro.20061 | proteasome component

_IDPredictionOTHERSPmTPCS_Position
Chro.20061OTHER0.9979490.0009770.001074
No Results

  • Fasta :-

    >Chro.20061 MTYNGGAILAMKGKECVAFATDMRLGSNGYRTIGTDFDKVIRPSSKTLMGFSGLATDIHT LTNLIKFKTNLYHLREEREIGVKALSHMTASILYSKRFSPYFVEPIVAGLDNNNVPFIAG YDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDELMEIVSQCMLSGIDRDAFSGW GCKVYLLTPEKLVTKTLKSRMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/675 Sequence name : 675 Sequence length : 202 VALUES OF COMPUTED PARAMETERS Coef20 : 3.727 CoefTot : -0.863 ChDiff : -2 ZoneTo : 14 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.300 1.518 0.348 0.569 MesoH : -0.209 0.473 -0.217 0.288 MuHd_075 : 12.131 7.541 4.092 1.708 MuHd_095 : 17.851 9.584 5.891 3.087 MuHd_100 : 15.342 6.329 6.415 2.379 MuHd_105 : 10.595 3.462 5.793 1.543 Hmax_075 : 5.600 9.100 0.368 4.180 Hmax_095 : 13.125 10.675 3.223 4.244 Hmax_100 : 12.200 10.800 3.654 4.020 Hmax_105 : 10.300 10.200 3.351 4.330 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9738 0.0262 DFMC : 0.9662 0.0338
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 202 Chro.20061 MTYNGGAILAMKGKECVAFATDMRLGSNGYRTIGTDFDKVIRPSSKTLMGFSGLATDIHTLTNLIKFKTNLYHLREEREI 80 GVKALSHMTASILYSKRFSPYFVEPIVAGLDNNNVPFIAGYDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDEL 160 MEIVSQCMLSGIDRDAFSGWGCKVYLLTPEKLVTKTLKSRMD 240 ................................................................................ 80 ................................................................................ 160 .......................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20061 12 GAILAMK|GK 0.071 . Chro.20061 14 ILAMKGK|EC 0.068 . Chro.20061 24 AFATDMR|LG 0.092 . Chro.20061 31 LGSNGYR|TI 0.128 . Chro.20061 39 IGTDFDK|VI 0.065 . Chro.20061 42 DFDKVIR|PS 0.098 . Chro.20061 46 VIRPSSK|TL 0.063 . Chro.20061 66 TLTNLIK|FK 0.065 . Chro.20061 68 TNLIKFK|TN 0.068 . Chro.20061 75 TNLYHLR|EE 0.092 . Chro.20061 78 YHLREER|EI 0.239 . Chro.20061 83 EREIGVK|AL 0.069 . Chro.20061 96 ASILYSK|RF 0.063 . Chro.20061 97 SILYSKR|FS 0.146 . Chro.20061 152 ICESYYR|PD 0.064 . Chro.20061 174 MLSGIDR|DA 0.167 . Chro.20061 183 FSGWGCK|VY 0.051 . Chro.20061 191 YLLTPEK|LV 0.066 . Chro.20061 195 PEKLVTK|TL 0.059 . Chro.20061 198 LVTKTLK|SR 0.081 . Chro.20061 200 TKTLKSR|MD 0.095 . ____________________________^_________________

  • Fasta :-

    >Chro.20061 ATGACTTATAATGGTGGTGCCATTTTGGCAATGAAGGGAAAAGAGTGCGTTGCATTTGCA ACAGATATGAGACTTGGATCTAATGGATACAGAACTATAGGTACTGATTTTGATAAAGTT ATTAGACCAAGCTCAAAAACATTGATGGGATTTTCAGGTTTAGCTACTGATATTCACACT CTAACAAACTTAATCAAATTTAAAACAAACTTGTATCATTTAAGGGAAGAAAGAGAAATT GGTGTTAAAGCACTTAGCCATATGACAGCTTCAATATTATATAGTAAACGTTTCAGCCCA TATTTTGTGGAACCAATTGTAGCAGGTCTTGATAATAATAATGTGCCTTTTATTGCTGGG TATGATCTTATTGGATGCTTATCAGTATGTAGCGAATTTGCAATTTCAGGAACCGCTGAT AATCAGCTTTTTGGTATCTGTGAATCATACTATAGACCCGATTTAGAACCTGATGAGCTC ATGGAAATCGTCTCACAATGTATGCTTTCCGGTATAGATAGAGATGCATTTTCTGGATGG GGTTGCAAAGTTTATCTACTTACTCCTGAAAAGCTCGTCACCAAAACTTTAAAATCAAGA ATGGACTAA
  • Download Fasta

  • Fasta :-

    MTYNGGAILAMKGKECVAFATDMRLGSNGYRTIGTDFDKVIRPSSKTLMGFSGLATDIHT LTNLIKFKTNLYHLREEREIGVKALSHMTASILYSKRFSPYFVEPIVAGLDNNNVPFIAG YDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDELMEIVSQCMLSGIDRDAFSGW GCKVYLLTPEKLVTKTLKSRMD

  • title: active site
  • coordinates: G6,D22,R24,K39,T138,D175,S178,G179
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.20061199 SKTLKSRMD-0.993unspChro.20061199 SKTLKSRMD-0.993unspChro.20061199 SKTLKSRMD-0.993unspChro.2006144 SVIRPSSKTL0.99unspChro.2006199 SSKRFSPYFV0.996unsp

Chro.20061      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India