Chro.20147 | 26S protease subunit regulatory subunit 6a

_IDPredictionOTHERSPmTPCS_Position
Chro.20147OTHER0.9999920.0000030.000006
No Results

  • Fasta :-

    >Chro.20147 MSSEEGTDNWSAEEAVESVKTLSVSELQSRIRLLDGEIRLMKSESNRLKHELNQMNERIR SNTEKIKLNKQLPYLVANIVESLDFSDEQENEGEGMEFDGDKNDKCMVIKTSSRQTVFLP VIGLVPENELKPGDLVGVNKDSYLILDKLPPEYDSRVKAMEVDERPMEEYSDIGGLDKQI QELVEAIVLPMTHKERFEKIGIKPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ LVQMFIGDGAKMVRDAFEIAREKAPSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLN QLDGFSSDDRVKVIAATNRPDTLDPALLRSGRLDRKVELPHPNEEARSRILQIHSRKMNV DLNDVNFQELSRSTDDFNGAQLKAVCVEAGMTALRRGATILCHEDYVEGIAAVLAKKKSP LSYFS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/207 Sequence name : 207 Sequence length : 425 VALUES OF COMPUTED PARAMETERS Coef20 : 3.327 CoefTot : 0.224 ChDiff : -14 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.012 -0.018 0.465 MesoH : -0.675 0.312 -0.395 0.188 MuHd_075 : 40.370 20.299 10.490 5.995 MuHd_095 : 17.970 10.005 5.546 1.203 MuHd_100 : 4.178 8.972 2.010 1.197 MuHd_105 : 10.083 8.995 3.548 1.977 Hmax_075 : 2.450 1.488 -1.294 1.902 Hmax_095 : -0.612 1.900 -2.914 1.160 Hmax_100 : -9.600 -0.800 -4.313 0.600 Hmax_105 : -6.300 0.000 -3.843 0.852 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8720 0.1280 DFMC : 0.8077 0.1923
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 425 Chro.20147 MSSEEGTDNWSAEEAVESVKTLSVSELQSRIRLLDGEIRLMKSESNRLKHELNQMNERIRSNTEKIKLNKQLPYLVANIV 80 ESLDFSDEQENEGEGMEFDGDKNDKCMVIKTSSRQTVFLPVIGLVPENELKPGDLVGVNKDSYLILDKLPPEYDSRVKAM 160 EVDERPMEEYSDIGGLDKQIQELVEAIVLPMTHKERFEKIGIKPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 240 LVQMFIGDGAKMVRDAFEIAREKAPSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRP 320 DTLDPALLRSGRLDRKVELPHPNEEARSRILQIHSRKMNVDLNDVNFQELSRSTDDFNGAQLKAVCVEAGMTALRRGATI 400 LCHEDYVEGIAAVLAKKKSPLSYFS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20147 20 EAVESVK|TL 0.071 . Chro.20147 30 VSELQSR|IR 0.066 . Chro.20147 32 ELQSRIR|LL 0.098 . Chro.20147 39 LLDGEIR|LM 0.066 . Chro.20147 42 GEIRLMK|SE 0.229 . Chro.20147 47 MKSESNR|LK 0.117 . Chro.20147 49 SESNRLK|HE 0.069 . Chro.20147 58 LNQMNER|IR 0.091 . Chro.20147 60 QMNERIR|SN 0.138 . Chro.20147 65 IRSNTEK|IK 0.074 . Chro.20147 67 SNTEKIK|LN 0.063 . Chro.20147 70 EKIKLNK|QL 0.061 . Chro.20147 102 MEFDGDK|ND 0.056 . Chro.20147 105 DGDKNDK|CM 0.058 . Chro.20147 110 DKCMVIK|TS 0.072 . Chro.20147 114 VIKTSSR|QT 0.073 . Chro.20147 131 VPENELK|PG 0.063 . Chro.20147 140 DLVGVNK|DS 0.073 . Chro.20147 148 SYLILDK|LP 0.051 . Chro.20147 156 PPEYDSR|VK 0.073 . Chro.20147 158 EYDSRVK|AM 0.062 . Chro.20147 165 AMEVDER|PM 0.083 . Chro.20147 178 DIGGLDK|QI 0.062 . Chro.20147 194 VLPMTHK|ER 0.060 . Chro.20147 196 PMTHKER|FE 0.097 . Chro.20147 199 HKERFEK|IG 0.126 . Chro.20147 203 FEKIGIK|PP 0.063 . Chro.20147 206 IGIKPPK|GV 0.101 . Chro.20147 218 GPPGTGK|TL 0.059 . Chro.20147 223 GKTLLAR|AC 0.099 . Chro.20147 230 ACAAQTK|AT 0.076 . Chro.20147 235 TKATFLK|LA 0.128 . Chro.20147 251 FIGDGAK|MV 0.085 . Chro.20147 254 DGAKMVR|DA 0.137 . Chro.20147 261 DAFEIAR|EK 0.084 . Chro.20147 263 FEIAREK|AP 0.062 . Chro.20147 279 LDAIGMK|RF 0.059 . Chro.20147 280 DAIGMKR|FD 0.173 . Chro.20147 289 SEHSGDR|EV 0.102 . Chro.20147 293 GDREVQR|TM 0.108 . Chro.20147 310 GFSSDDR|VK 0.076 . Chro.20147 312 SSDDRVK|VI 0.060 . Chro.20147 319 VIAATNR|PD 0.077 . Chro.20147 329 LDPALLR|SG 0.085 . Chro.20147 332 ALLRSGR|LD 0.231 . Chro.20147 335 RSGRLDR|KV 0.354 . Chro.20147 336 SGRLDRK|VE 0.068 . Chro.20147 347 HPNEEAR|SR 0.194 . Chro.20147 349 NEEARSR|IL 0.087 . Chro.20147 356 ILQIHSR|KM 0.093 . Chro.20147 357 LQIHSRK|MN 0.083 . Chro.20147 372 NFQELSR|ST 0.122 . Chro.20147 383 FNGAQLK|AV 0.087 . Chro.20147 395 AGMTALR|RG 0.100 . Chro.20147 396 GMTALRR|GA 0.160 . Chro.20147 416 IAAVLAK|KK 0.071 . Chro.20147 417 AAVLAKK|KS 0.071 . Chro.20147 418 AVLAKKK|SP 0.108 . ____________________________^_________________

  • Fasta :-

    >Chro.20147 ATGTCATCTGAGGAAGGCACCGATAATTGGTCTGCAGAGGAGGCTGTAGAGAGCGTAAAG ACTCTGAGTGTTAGTGAGCTTCAGTCTAGGATTCGCCTTTTAGATGGTGAAATTCGACTT ATGAAAAGCGAAAGTAATCGTCTTAAGCATGAATTAAACCAGATGAATGAAAGAATCAGA AGTAATACTGAAAAAATAAAACTTAACAAACAGCTTCCTTATCTGGTTGCCAACATTGTC GAATCACTGGATTTTTCAGATGAACAGGAAAATGAGGGTGAAGGGATGGAATTCGATGGA GACAAAAACGATAAATGCATGGTAATAAAAACATCATCAAGGCAGACTGTCTTTCTCCCT GTCATTGGGTTGGTTCCAGAGAATGAATTAAAGCCTGGAGATCTTGTTGGAGTGAATAAG GATAGTTATTTGATTCTTGATAAATTGCCACCGGAGTATGACTCTAGAGTTAAGGCTATG GAAGTTGATGAAAGACCAATGGAAGAGTATTCAGATATTGGAGGATTAGATAAGCAGATC CAGGAATTAGTGGAGGCAATCGTCCTTCCGATGACCCATAAAGAAAGGTTTGAAAAAATT GGTATAAAACCCCCAAAGGGTGTACTAATGTATGGACCTCCAGGCACAGGGAAAACTCTT TTGGCAAGGGCATGTGCAGCACAAACTAAAGCCACATTTTTGAAATTAGCAGGCCCGCAA CTCGTACAAATGTTTATTGGTGATGGTGCAAAGATGGTTAGAGATGCATTTGAAATTGCA CGTGAAAAAGCTCCTTCAATAATATTTATTGACGAGCTTGACGCTATAGGTATGAAAAGG TTTGATAGTGAGCATAGTGGGGATAGAGAGGTACAAAGGACTATGCTTGAGTTACTTAAT CAATTAGATGGATTTAGCTCAGACGACAGAGTTAAAGTTATTGCTGCAACGAATAGGCCG GATACTCTCGATCCAGCCCTTTTAAGATCAGGTAGGCTTGACCGTAAGGTCGAGTTACCG CATCCAAACGAAGAAGCAAGGTCCAGAATACTTCAAATACATAGCAGAAAAATGAATGTT GATTTAAATGACGTGAATTTCCAAGAGCTATCGAGATCAACAGATGATTTTAACGGTGCT CAGCTTAAGGCAGTTTGTGTCGAAGCGGGGATGACAGCACTCAGAAGGGGAGCAACGATA CTTTGCCATGAAGATTATGTCGAAGGGATTGCAGCAGTACTAGCAAAGAAGAAATCCCCA CTTAGCTATTTTTCATAA
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  • Fasta :-

    MSSEEGTDNWSAEEAVESVKTLSVSELQSRIRLLDGEIRLMKSESNRLKHELNQMNERIR SNTEKIKLNKQLPYLVANIVESLDFSDEQENEGEGMEFDGDKNDKCMVIKTSSRQTVFLP VIGLVPENELKPGDLVGVNKDSYLILDKLPPEYDSRVKAMEVDERPMEEYSDIGGLDKQI QELVEAIVLPMTHKERFEKIGIKPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ LVQMFIGDGAKMVRDAFEIAREKAPSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLN QLDGFSSDDRVKVIAATNRPDTLDPALLRSGRLDRKVELPHPNEEARSRILQIHSRKMNV DLNDVNFQELSRSTDDFNGAQLKAVCVEAGMTALRRGATILCHEDYVEGIAAVLAKKKSP LSYFS

  • title: ATP binding site
  • coordinates: P213,P214,G215,T216,G217,K218,T219,L220,D271,N318
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.20147T70.5150.036Chro.20147S20.5060.063Chro.20147S30.5040.052
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.20147T70.5150.036Chro.20147S20.5060.063Chro.20147S30.5040.052
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.2014711 STDNWSAEEA0.992unspChro.20147283 SKRFDSEHSG0.994unsp

Chro.20147      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India