Chro.20222 | proteasome A type subunit

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.20222	OTHER	0.999855	0.000088	0.000057

No Results

Fasta :-
>Chro.20222 MYRNQYDTDVVTWSPQGRVFQIEYAMEAVKQGTAVVGARNNEIVVLACIKRSTSKLAGYQ KKLYKIDNHIGVAVSGITADAKVICNYLRSECLNYSFTYDSPMPLNTLVNKLVLKSQVNT QEYGRRPFGVGLLLAGFDESGPHLFETCPSGNCFEYYSIAIGSRSQASKTYLEKHFKEFA NCSKDQLILHTLRALRSSLSSEQEMNQENVDVAILGRNDVYNELLEEEKIKYLQIINQEQ PPTIEQIDESQETSSMQID
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/411 Sequence name : 411 Sequence length : 259 VALUES OF COMPUTED PARAMETERS Coef20 : 3.722 CoefTot : -0.468 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.400 1.259 0.030 0.491 MesoH : -0.690 0.209 -0.386 0.153 MuHd_075 : 28.014 15.949 6.755 6.427 MuHd_095 : 19.210 2.047 1.125 3.583 MuHd_100 : 15.557 2.752 0.747 2.872 MuHd_105 : 5.702 6.772 1.126 0.733 Hmax_075 : 4.200 4.550 -1.252 2.765 Hmax_095 : -0.700 -3.900 -3.562 1.575 Hmax_100 : -0.700 -3.900 -3.562 1.160 Hmax_105 : -8.400 -4.300 -4.984 -0.548 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9023 0.0977 DFMC : 0.9154 0.0846

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 259 Chro.20222 MYRNQYDTDVVTWSPQGRVFQIEYAMEAVKQGTAVVGARNNEIVVLACIKRSTSKLAGYQKKLYKIDNHIGVAVSGITAD 80 AKVICNYLRSECLNYSFTYDSPMPLNTLVNKLVLKSQVNTQEYGRRPFGVGLLLAGFDESGPHLFETCPSGNCFEYYSIA 160 IGSRSQASKTYLEKHFKEFANCSKDQLILHTLRALRSSLSSEQEMNQENVDVAILGRNDVYNELLEEEKIKYLQIINQEQ 240 PPTIEQIDESQETSSMQID 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20222 3 ----MYR|NQ 0.079 . Chro.20222 18 TWSPQGR|VF 0.130 . Chro.20222 30 YAMEAVK|QG 0.065 . Chro.20222 39 TAVVGAR|NN 0.119 . Chro.20222 50 VVLACIK|RS 0.056 . Chro.20222 51 VLACIKR|ST 0.357 . Chro.20222 55 IKRSTSK|LA 0.081 . Chro.20222 61 KLAGYQK|KL 0.071 . Chro.20222 62 LAGYQKK|LY 0.104 . Chro.20222 65 YQKKLYK|ID 0.068 . Chro.20222 82 GITADAK|VI 0.071 . Chro.20222 89 VICNYLR|SE 0.089 . Chro.20222 111 LNTLVNK|LV 0.074 . Chro.20222 115 VNKLVLK|SQ 0.067 . Chro.20222 125 NTQEYGR|RP 0.075 . Chro.20222 126 TQEYGRR|PF 0.172 . Chro.20222 164 SIAIGSR|SQ 0.102 . Chro.20222 169 SRSQASK|TY 0.082 . Chro.20222 174 SKTYLEK|HF 0.061 . Chro.20222 177 YLEKHFK|EF 0.061 . Chro.20222 184 EFANCSK|DQ 0.060 . Chro.20222 193 LILHTLR|AL 0.088 . Chro.20222 196 HTLRALR|SS 0.297 . Chro.20222 217 DVAILGR|ND 0.073 . Chro.20222 229 ELLEEEK|IK 0.055 . Chro.20222 231 LEEEKIK|YL 0.078 . ____________________________^_________________

Fasta :-
>Chro.20222 ATGTATAGAAACCAATATGATACGGATGTTGTTACTTGGTCTCCACAAGGAAGAGTTTTC CAGATTGAATACGCCATGGAAGCAGTTAAACAAGGCACTGCAGTAGTTGGAGCAAGAAAC AATGAGATAGTTGTTCTTGCTTGCATAAAAAGAAGTACAAGCAAGCTCGCTGGGTACCAA AAGAAACTATACAAAATTGATAACCATATTGGCGTAGCAGTTTCAGGGATTACTGCAGAC GCTAAAGTAATTTGTAACTATCTTAGATCAGAATGTCTAAACTACTCATTCACATATGAT TCACCAATGCCATTGAACACTTTGGTTAACAAGCTTGTATTGAAATCCCAGGTAAATACA CAAGAATACGGCAGAAGGCCATTTGGCGTAGGATTGCTCTTGGCAGGATTTGATGAAAGC GGCCCGCACTTATTTGAAACATGCCCTTCTGGGAATTGCTTTGAATATTACTCGATTGCA ATAGGGTCAAGATCTCAAGCTAGCAAAACTTATTTAGAAAAACATTTTAAGGAATTTGCT AATTGTAGCAAGGATCAATTGATTTTACATACTTTAAGAGCATTAAGATCAAGCTTGTCA TCTGAACAAGAAATGAATCAAGAAAATGTGGATGTGGCAATTTTAGGAAGAAATGACGTT TATAATGAATTATTAGAGGAAGAAAAAATAAAATATCTTCAAATTATTAACCAAGAACAA CCGCCAACTATAGAACAAATTGATGAATCTCAAGAAACTTCCTCTATGCAAATAGACTAA
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Fasta :-

MYRNQYDTDVVTWSPQGRVFQIEYAMEAVKQGTAVVGARNNEIVVLACIKRSTSKLAGYQ KKLYKIDNHIGVAVSGITADAKVICNYLRSECLNYSFTYDSPMPLNTLVNKLVLKSQVNT QEYGRRPFGVGLLLAGFDESGPHLFETCPSGNCFEYYSIAIGSRSQASKTYLEKHFKEFA NCSKDQLILHTLRALRSSLSSEQEMNQENVDVAILGRNDVYNELLEEEKIKYLQIINQEQ PPTIEQIDESQETSSMQID

Proteasome subunits

title: active site
coordinates: T33,I49,R51,K62,S163

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.20222	T	253	0.580	0.067	Chro.20222	S	255	0.510	0.123	Chro.20222	S	254	0.502	0.024

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.20222	T	253	0.580	0.067	Chro.20222	S	255	0.510	0.123	Chro.20222	S	254	0.502	0.024

	ID	Site	Peptide	Score	Method
	Chro.20222	54 S	KRSTSKLAG	0.991	unsp

Chro.20222 | proteasome A type subunit

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.20222

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India