Chro.20366 | ubiquitin specific protease 66

_IDPredictionOTHERSPmTPCS_Position
Chro.20366OTHER0.9999650.0000320.000003
No Results

  • Fasta :-

    >Chro.20366 MGNSVPSSSSSVSSETVNTNRNGAENMSSPIGIKNFGNTCYMNAGLQFISAMGIFTEENF GGMKLNKSSSEEVCRSLISILIQLGKPSRITDAISPYQLFKQLRQQNSDLFNQHQQDAHE FIMYILEIIHDGTIKPCNTPKLSNEDLEKLSKKSTRPGNVFWNNHMMRNNSILNNTICGQ FRSRITCENCGNNSDTFDPFWDITLALPEVSDDYEKISIGSCFRKFFEQQNLFHENDEPN YNCSHCKSVVNATRCINISQFPNVLLVTLKRFNNNGEKCNGIVSFKTAGIILKSLTEIGH FKLVAVLQHNGSTLFQGHYISYVFKKEFNGWFKFDDDIVTLVDDILEEDIQAYCLLYVLE SKSALNSNSEQAYSVGIRNQRN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/660 Sequence name : 660 Sequence length : 382 VALUES OF COMPUTED PARAMETERS Coef20 : 4.089 CoefTot : 0.259 ChDiff : -5 ZoneTo : 14 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.329 1.265 0.115 0.498 MesoH : -0.457 0.363 -0.377 0.259 MuHd_075 : 7.602 6.008 2.023 2.592 MuHd_095 : 23.657 19.758 7.109 5.134 MuHd_100 : 16.485 14.389 5.372 4.197 MuHd_105 : 4.607 6.009 2.062 2.242 Hmax_075 : 10.325 5.250 0.845 2.651 Hmax_095 : 12.775 10.325 1.871 3.509 Hmax_100 : 12.000 7.600 1.417 2.910 Hmax_105 : 9.100 5.717 1.107 2.998 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8679 0.1321 DFMC : 0.8190 0.1810
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 382 Chro.20366 MGNSVPSSSSSVSSETVNTNRNGAENMSSPIGIKNFGNTCYMNAGLQFISAMGIFTEENFGGMKLNKSSSEEVCRSLISI 80 LIQLGKPSRITDAISPYQLFKQLRQQNSDLFNQHQQDAHEFIMYILEIIHDGTIKPCNTPKLSNEDLEKLSKKSTRPGNV 160 FWNNHMMRNNSILNNTICGQFRSRITCENCGNNSDTFDPFWDITLALPEVSDDYEKISIGSCFRKFFEQQNLFHENDEPN 240 YNCSHCKSVVNATRCINISQFPNVLLVTLKRFNNNGEKCNGIVSFKTAGIILKSLTEIGHFKLVAVLQHNGSTLFQGHYI 320 SYVFKKEFNGWFKFDDDIVTLVDDILEEDIQAYCLLYVLESKSALNSNSEQAYSVGIRNQRN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20366 21 ETVNTNR|NG 0.074 . Chro.20366 34 SSPIGIK|NF 0.062 . Chro.20366 64 ENFGGMK|LN 0.055 . Chro.20366 67 GGMKLNK|SS 0.099 . Chro.20366 75 SSEEVCR|SL 0.167 . Chro.20366 86 ILIQLGK|PS 0.060 . Chro.20366 89 QLGKPSR|IT 0.104 . Chro.20366 101 SPYQLFK|QL 0.081 . Chro.20366 104 QLFKQLR|QQ 0.094 . Chro.20366 135 IHDGTIK|PC 0.059 . Chro.20366 141 KPCNTPK|LS 0.069 . Chro.20366 149 SNEDLEK|LS 0.059 . Chro.20366 152 DLEKLSK|KS 0.057 . Chro.20366 153 LEKLSKK|ST 0.208 . Chro.20366 156 LSKKSTR|PG 0.100 . Chro.20366 168 WNNHMMR|NN 0.136 . Chro.20366 182 TICGQFR|SR 0.160 . Chro.20366 184 CGQFRSR|IT 0.085 . Chro.20366 216 VSDDYEK|IS 0.055 . Chro.20366 224 SIGSCFR|KF 0.093 . Chro.20366 225 IGSCFRK|FF 0.183 . Chro.20366 247 YNCSHCK|SV 0.128 . Chro.20366 254 SVVNATR|CI 0.101 . Chro.20366 270 VLLVTLK|RF 0.056 . Chro.20366 271 LLVTLKR|FN 0.228 . Chro.20366 278 FNNNGEK|CN 0.068 . Chro.20366 286 NGIVSFK|TA 0.092 . Chro.20366 293 TAGIILK|SL 0.100 . Chro.20366 302 TEIGHFK|LV 0.086 . Chro.20366 325 YISYVFK|KE 0.075 . Chro.20366 326 ISYVFKK|EF 0.135 . Chro.20366 333 EFNGWFK|FD 0.079 . Chro.20366 362 LYVLESK|SA 0.070 . Chro.20366 378 AYSVGIR|NQ 0.090 . Chro.20366 381 VGIRNQR|N- 0.184 . ____________________________^_________________

  • Fasta :-

    >Chro.20366 ATGGGAAATTCAGTTCCCTCATCTTCATCATCAGTATCATCAGAAACAGTTAATACGAAT AGGAACGGGGCTGAAAATATGAGTAGTCCAATAGGAATAAAGAATTTTGGGAACACGTGT TATATGAATGCTGGGTTACAGTTTATATCAGCAATGGGAATCTTTACGGAAGAGAATTTT GGAGGGATGAAACTTAATAAGAGCTCCTCAGAGGAGGTTTGTAGGTCATTAATATCAATT TTAATTCAGTTAGGAAAACCAAGTAGAATCACAGATGCAATTTCTCCATATCAACTTTTT AAGCAACTTAGACAACAGAACTCTGATCTTTTTAACCAGCATCAACAAGATGCACATGAA TTTATTATGTATATTTTGGAAATAATCCATGATGGGACTATTAAACCATGTAATACTCCA AAGCTGTCAAACGAAGATCTTGAGAAATTGAGCAAAAAATCAACTCGACCAGGAAATGTT TTTTGGAATAACCATATGATGAGAAATAATTCGATTTTGAATAATACAATATGTGGACAG TTCAGAAGTAGAATAACTTGTGAGAATTGTGGAAATAATAGTGATACTTTTGATCCTTTT TGGGATATAACATTGGCTCTTCCTGAAGTTTCAGATGATTATGAGAAGATTTCAATTGGG TCTTGCTTTAGAAAGTTTTTTGAGCAACAGAATCTTTTTCACGAAAATGATGAACCAAAT TACAATTGTTCCCATTGTAAGAGTGTTGTAAACGCAACAAGATGTATAAATATTTCGCAG TTCCCAAATGTATTGCTTGTAACTTTAAAGAGGTTTAATAACAACGGAGAAAAATGTAAT GGGATTGTTTCCTTTAAAACAGCAGGAATAATACTCAAATCTCTTACAGAGATTGGCCAC TTCAAGTTAGTAGCAGTGCTTCAACACAATGGAAGTACTCTTTTCCAAGGCCATTATATC TCCTATGTTTTCAAAAAGGAGTTCAACGGATGGTTTAAATTTGATGATGATATAGTCACT TTAGTAGACGATATTCTCGAGGAGGATATTCAGGCTTACTGCCTTCTTTATGTTCTCGAG TCAAAGAGCGCTTTGAACTCCAACTCTGAACAAGCTTATTCTGTGGGCATAAGGAATCAG AGAAATTAG
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  • Fasta :-

    MGNSVPSSSSSVSSETVNTNRNGAENMSSPIGIKNFGNTCYMNAGLQFISAMGIFTEENF GGMKLNKSSSEEVCRSLISILIQLGKPSRITDAISPYQLFKQLRQQNSDLFNQHQQDAHE FIMYILEIIHDGTIKPCNTPKLSNEDLEKLSKKSTRPGNVFWNNHMMRNNSILNNTICGQ FRSRITCENCGNNSDTFDPFWDITLALPEVSDDYEKISIGSCFRKFFEQQNLFHENDEPN YNCSHCKSVVNATRCINISQFPNVLLVTLKRFNNNGEKCNGIVSFKTAGIILKSLTEIGH FKLVAVLQHNGSTLFQGHYISYVFKKEFNGWFKFDDDIVTLVDDILEEDIQAYCLLYVLE SKSALNSNSEQAYSVGIRNQRN

  • title: Active Site
  • coordinates: N35,C40,H318,D336
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.20366S40.6080.019Chro.20366T160.5790.059Chro.20366T190.5740.057Chro.20366S70.5070.077
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.20366S40.6080.019Chro.20366T160.5790.059Chro.20366T190.5740.057Chro.20366S70.5070.077
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.20366151 SLEKLSKKST0.996unspChro.20366151 SLEKLSKKST0.996unspChro.20366151 SLEKLSKKST0.996unspChro.2036668 SKLNKSSSEE0.994unspChro.20366143 STPKLSNEDL0.995unsp

Chro.20366      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India