Chro.30254 | 20S proteasome subunit PAA1

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.30254	OTHER	0.988583	0.000548	0.010869

No Results

Fasta :-
>Chro.30254 MSRLSQSLHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQ GQQDKLLDPAYVTSLYKVRKHIGAVMLGLAPDCRSLISK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/94 Sequence name : 94 Sequence length : 99 VALUES OF COMPUTED PARAMETERS Coef20 : 3.852 CoefTot : 0.321 ChDiff : 7 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.429 1.212 0.093 0.394 MesoH : -1.362 -0.017 -0.548 0.050 MuHd_075 : 10.258 7.580 3.073 3.356 MuHd_095 : 32.689 20.275 5.671 7.483 MuHd_100 : 29.027 17.534 5.114 6.686 MuHd_105 : 21.435 11.449 4.272 4.533 Hmax_075 : 7.817 7.700 -0.590 3.815 Hmax_095 : 13.400 12.800 0.472 4.860 Hmax_100 : 13.400 12.800 0.472 4.860 Hmax_105 : 4.800 5.600 -0.918 2.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7219 0.2781 DFMC : 0.8864 0.1136

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 99 Chro.30254 MSRLSQSLHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQGQQDKLLDPAYVTSLYKVRK 80 HIGAVMLGLAPDCRSLISK 160 ................................................................................ 80 ................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30254 3 ----MSR|LS 0.073 . Chro.30254 11 SQSLHDR|HI 0.117 . Chro.30254 21 IFSPEGK|LY 0.066 . Chro.30254 30 QIEYTFR|AV 0.119 . Chro.30254 33 YTFRAVK|NS 0.087 . Chro.30254 43 ITAIAIK|GK 0.069 . Chro.30254 45 AIAIKGK|DT 0.085 . Chro.30254 54 VCIVCEK|KV 0.072 . Chro.30254 55 CIVCEKK|VP 0.090 . Chro.30254 65 QQGQQDK|LL 0.083 . Chro.30254 77 YVTSLYK|VR 0.056 . Chro.30254 79 TSLYKVR|KH 0.095 . Chro.30254 80 SLYKVRK|HI 0.172 . Chro.30254 94 GLAPDCR|SL 0.138 . Chro.30254 99 CRSLISK|-- 0.081 . ____________________________^_________________

Fasta :-
>Chro.30254 ATGTCCAGATTATCTCAATCCCTGCACGATAGGCATATTACAATCTTTTCGCCAGAAGGC AAACTTTATCAAATAGAATATACCTTTAGAGCTGTAAAGAATTCAAACATTACGGCAATT GCTATAAAGGGTAAAGATACCGTATGCATTGTATGTGAAAAGAAAGTCCCAAATCAGCAA GGACAACAAGATAAACTTTTGGACCCTGCCTATGTTACGTCTTTGTATAAAGTAAGAAAG CATATTGGGGCAGTAATGCTTGGGTTGGCTCCTGATTGTAGATCACTTATTTCAAAGTAA
Download Fasta

Fasta :-

MSRLSQSLHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQ GQQDKLLDPAYVTSLYKVRKHIGAVMLGLAPDCRSLISK

Proteasome subunits

title: active site
coordinates: I37,E53,K55,S74

No Results

Chro.30254 | 20S proteasome subunit PAA1

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.30254

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India