Chro.30259 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
Chro.30259OTHER0.9994560.0005000.000043
No Results

  • Fasta :-

    >Chro.30259 MKVNILYSVTGELISVEIHEETTVEVLKSLIEIELNLDSFKNYELSIEGKILQNDGFVLS DIVNEGSIFVLSEKTNKNTFENSNFSLNDQENLIQLLSKELFTKIKEDQSLKSVYYSKSS KYRDSIDKDDIKSFTELIKNDYFSGNLNSIPSSSNSSSNLYNLDPLSPEYQRLIEEQVRK QNVEENLILAQDHLPESFTQVHMLYINAEVNGISIKAFVDSGAQTTIMSKKCAEKCNLVR LIDYRFSGIAQGVGTSKIVGKIHVAQMKIGNSFFPFSITVLEESHVDFLFGLDLLKRYQC CIDLHQNALIIGDEKVQFLSESEINSEISRIDPNNEYDQCFEQGKKLQLLSLGFSESQVI NALRATNGNTELAASLLFSNETFE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/133 Sequence name : 133 Sequence length : 384 VALUES OF COMPUTED PARAMETERS Coef20 : 3.635 CoefTot : -0.420 ChDiff : -21 ZoneTo : 11 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.776 1.241 -0.033 0.512 MesoH : -0.493 0.466 -0.352 0.247 MuHd_075 : 27.486 15.535 7.948 3.941 MuHd_095 : 6.788 11.456 2.638 2.403 MuHd_100 : 6.287 9.004 2.067 1.725 MuHd_105 : 3.720 9.198 1.304 1.392 Hmax_075 : 16.567 21.000 3.030 6.557 Hmax_095 : 11.987 13.125 2.501 4.821 Hmax_100 : 5.500 13.100 0.375 4.470 Hmax_105 : 6.400 19.017 0.884 4.710 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9643 0.0357 DFMC : 0.9435 0.0565
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 384 Chro.30259 MKVNILYSVTGELISVEIHEETTVEVLKSLIEIELNLDSFKNYELSIEGKILQNDGFVLSDIVNEGSIFVLSEKTNKNTF 80 ENSNFSLNDQENLIQLLSKELFTKIKEDQSLKSVYYSKSSKYRDSIDKDDIKSFTELIKNDYFSGNLNSIPSSSNSSSNL 160 YNLDPLSPEYQRLIEEQVRKQNVEENLILAQDHLPESFTQVHMLYINAEVNGISIKAFVDSGAQTTIMSKKCAEKCNLVR 240 LIDYRFSGIAQGVGTSKIVGKIHVAQMKIGNSFFPFSITVLEESHVDFLFGLDLLKRYQCCIDLHQNALIIGDEKVQFLS 320 ESEINSEISRIDPNNEYDQCFEQGKKLQLLSLGFSESQVINALRATNGNTELAASLLFSNETFE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30259 2 -----MK|VN 0.058 . Chro.30259 28 TTVEVLK|SL 0.094 . Chro.30259 41 LNLDSFK|NY 0.066 . Chro.30259 50 ELSIEGK|IL 0.071 . Chro.30259 74 IFVLSEK|TN 0.056 . Chro.30259 77 LSEKTNK|NT 0.062 . Chro.30259 99 LIQLLSK|EL 0.073 . Chro.30259 104 SKELFTK|IK 0.068 . Chro.30259 106 ELFTKIK|ED 0.060 . Chro.30259 112 KEDQSLK|SV 0.091 . Chro.30259 118 KSVYYSK|SS 0.068 . Chro.30259 121 YYSKSSK|YR 0.075 . Chro.30259 123 SKSSKYR|DS 0.242 . Chro.30259 128 YRDSIDK|DD 0.074 . Chro.30259 132 IDKDDIK|SF 0.075 . Chro.30259 139 SFTELIK|ND 0.059 . Chro.30259 172 LSPEYQR|LI 0.094 . Chro.30259 179 LIEEQVR|KQ 0.083 . Chro.30259 180 IEEQVRK|QN 0.077 . Chro.30259 216 VNGISIK|AF 0.073 . Chro.30259 230 QTTIMSK|KC 0.053 . Chro.30259 231 TTIMSKK|CA 0.168 . Chro.30259 235 SKKCAEK|CN 0.061 . Chro.30259 240 EKCNLVR|LI 0.090 . Chro.30259 245 VRLIDYR|FS 0.134 . Chro.30259 257 QGVGTSK|IV 0.089 . Chro.30259 261 TSKIVGK|IH 0.076 . Chro.30259 268 IHVAQMK|IG 0.064 . Chro.30259 296 FGLDLLK|RY 0.054 . Chro.30259 297 GLDLLKR|YQ 0.149 . Chro.30259 315 LIIGDEK|VQ 0.058 . Chro.30259 330 INSEISR|ID 0.087 . Chro.30259 345 QCFEQGK|KL 0.059 . Chro.30259 346 CFEQGKK|LQ 0.066 . Chro.30259 364 QVINALR|AT 0.087 . ____________________________^_________________

  • Fasta :-

    >Chro.30259 ATGAAAGTGAATATTCTCTATAGCGTAACAGGAGAGCTCATCTCCGTTGAAATCCATGAA GAAACTACTGTTGAAGTTTTAAAATCGCTTATTGAAATTGAACTTAACTTAGATAGTTTT AAGAATTACGAGCTCTCAATTGAAGGTAAAATTTTGCAAAATGATGGATTCGTATTATCT GATATTGTAAATGAAGGTTCAATATTTGTATTATCAGAAAAAACCAATAAAAATACCTTT GAAAATTCTAATTTTTCTTTGAATGACCAGGAAAATCTGATTCAATTGCTTTCAAAAGAG CTTTTCACAAAAATTAAAGAAGATCAATCATTAAAATCAGTATACTACTCAAAATCAAGT AAATATAGAGATTCAATTGATAAAGATGATATTAAAAGTTTTACAGAACTAATAAAAAAT GACTACTTTTCCGGAAATCTGAACTCTATTCCTTCTAGTTCAAATTCAAGCTCAAATTTG TATAATTTGGACCCTTTAAGCCCAGAATATCAAAGGTTAATTGAAGAGCAGGTAAGAAAA CAAAATGTTGAAGAAAATTTAATTTTGGCGCAAGACCATTTACCAGAAAGTTTTACGCAA GTTCACATGCTATATATAAATGCAGAAGTTAATGGAATCTCAATTAAAGCGTTTGTTGAT AGTGGTGCGCAGACAACAATTATGTCTAAAAAATGTGCAGAAAAGTGCAACCTCGTGAGG TTAATAGACTATAGGTTTAGTGGAATTGCACAAGGTGTGGGCACAAGTAAAATTGTTGGC AAAATACACGTTGCTCAAATGAAAATTGGAAATTCCTTCTTTCCATTCTCAATAACAGTA CTTGAAGAAAGTCATGTGGATTTCCTATTTGGATTAGATTTACTTAAAAGGTATCAATGT TGTATTGACTTACATCAAAATGCACTAATTATTGGAGATGAAAAGGTACAATTCTTATCT GAATCCGAAATAAATAGTGAAATTAGTCGAATAGATCCAAATAATGAATATGATCAATGC TTTGAACAAGGGAAAAAACTTCAACTTTTATCACTAGGGTTTTCTGAAAGCCAGGTAATT AATGCATTAAGAGCTACAAATGGAAATACTGAATTAGCTGCGTCGTTATTATTTTCAAAT GAAACTTTTGAATAA
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  • Fasta :-

    MKVNILYSVTGELISVEIHEETTVEVLKSLIEIELNLDSFKNYELSIEGKILQNDGFVLS DIVNEGSIFVLSEKTNKNTFENSNFSLNDQENLIQLLSKELFTKIKEDQSLKSVYYSKSS KYRDSIDKDDIKSFTELIKNDYFSGNLNSIPSSSNSSSNLYNLDPLSPEYQRLIEEQVRK QNVEENLILAQDHLPESFTQVHMLYINAEVNGISIKAFVDSGAQTTIMSKKCAEKCNLVR LIDYRFSGIAQGVGTSKIVGKIHVAQMKIGNSFFPFSITVLEESHVDFLFGLDLLKRYQC CIDLHQNALIIGDEKVQFLSESEINSEISRIDPNNEYDQCFEQGKKLQLLSLGFSESQVI NALRATNGNTELAASLLFSNETFE

  • title: catalytic motif
  • coordinates: D220,S221,G222
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.30259329 SNSEISRIDP0.991unspChro.30259329 SNSEISRIDP0.991unspChro.30259329 SNSEISRIDP0.991unspChro.3025986 SNSNFSLNDQ0.994unspChro.30259167 SLDPLSPEYQ0.992unsp

Chro.30259      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India