Chro.30479 | zinc protease

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.30479OTHER0.9998630.0000840.000053
No Results

  • Fasta :-

    >Chro.30479 MGKYNNFFYYPNKNIPSPKSIIQFRFIFPLDKITDNFSEFSTDSVTFNLLFLIFTDIFGL VLTRNFFEILSAKYSIDTDDVRFISDSNKTNQLTLVISGFSDHIEEITSELKSFIQNFST YITNNDFELEKEKLAIGFKSYILNPTISSDIVEMKNKLFFNQDYSFETQLSRLESINFEE FIKFSEFYLNNYKLEGFIVGNLNPLQSINIINTISTISSLENGNSSTNSIHNLLSILSMG VNQSVKLLRLLYSSITGLFVSMDLKDEDYLNVQEHLRPSPPLPMSNSIKDFQKFDPLSLK KGSKIYSYYLSKSKISVNSAISLKVAIGYDYMKNYILTNILILIISEEFFTEIRTEKQLG YVVGASYEDIVDHVSGINFNVVSSNKNIETLANNVLEFWNDWFSPDSNKITETLFNEAKE SFIQTMKEKIVNIKDLFSHFSDEISTKTYDFDWKKNYIDYAEKLTYQNFLDWFKQIYNNS NLFMLAIQSPNSEEKNVLDTLSNFVPQNFTKFTPSDSLFSIENIRTYNQWNVCNAI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/759 Sequence name : 759 Sequence length : 536 VALUES OF COMPUTED PARAMETERS Coef20 : 2.872 CoefTot : -2.282 ChDiff : -17 ZoneTo : 30 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.588 2.059 0.193 0.759 MesoH : 0.045 0.491 -0.266 0.269 MuHd_075 : 21.845 16.027 7.737 4.651 MuHd_095 : 17.971 14.657 5.431 4.533 MuHd_100 : 23.590 19.156 6.995 6.269 MuHd_105 : 28.276 22.387 9.100 7.115 Hmax_075 : 11.783 16.217 3.232 4.360 Hmax_095 : 4.600 2.100 -1.451 3.940 Hmax_100 : 12.800 9.600 0.450 4.860 Hmax_105 : 14.700 15.283 2.844 6.580 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9770 0.0230 DFMC : 0.9623 0.0377
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 536 Chro.30479 MGKYNNFFYYPNKNIPSPKSIIQFRFIFPLDKITDNFSEFSTDSVTFNLLFLIFTDIFGLVLTRNFFEILSAKYSIDTDD 80 VRFISDSNKTNQLTLVISGFSDHIEEITSELKSFIQNFSTYITNNDFELEKEKLAIGFKSYILNPTISSDIVEMKNKLFF 160 NQDYSFETQLSRLESINFEEFIKFSEFYLNNYKLEGFIVGNLNPLQSINIINTISTISSLENGNSSTNSIHNLLSILSMG 240 VNQSVKLLRLLYSSITGLFVSMDLKDEDYLNVQEHLRPSPPLPMSNSIKDFQKFDPLSLKKGSKIYSYYLSKSKISVNSA 320 ISLKVAIGYDYMKNYILTNILILIISEEFFTEIRTEKQLGYVVGASYEDIVDHVSGINFNVVSSNKNIETLANNVLEFWN 400 DWFSPDSNKITETLFNEAKESFIQTMKEKIVNIKDLFSHFSDEISTKTYDFDWKKNYIDYAEKLTYQNFLDWFKQIYNNS 480 NLFMLAIQSPNSEEKNVLDTLSNFVPQNFTKFTPSDSLFSIENIRTYNQWNVCNAI 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30479 3 ----MGK|YN 0.059 . Chro.30479 13 FFYYPNK|NI 0.058 . Chro.30479 19 KNIPSPK|SI 0.136 . Chro.30479 25 KSIIQFR|FI 0.144 . Chro.30479 32 FIFPLDK|IT 0.059 . Chro.30479 64 FGLVLTR|NF 0.080 . Chro.30479 73 FEILSAK|YS 0.067 . Chro.30479 82 IDTDDVR|FI 0.118 . Chro.30479 89 FISDSNK|TN 0.065 . Chro.30479 112 EITSELK|SF 0.070 . Chro.30479 131 NDFELEK|EK 0.059 . Chro.30479 133 FELEKEK|LA 0.060 . Chro.30479 139 KLAIGFK|SY 0.072 . Chro.30479 155 SDIVEMK|NK 0.060 . Chro.30479 157 IVEMKNK|LF 0.065 . Chro.30479 172 FETQLSR|LE 0.075 . Chro.30479 183 NFEEFIK|FS 0.067 . Chro.30479 193 FYLNNYK|LE 0.057 . Chro.30479 246 GVNQSVK|LL 0.060 . Chro.30479 249 QSVKLLR|LL 0.100 . Chro.30479 265 FVSMDLK|DE 0.067 . Chro.30479 277 NVQEHLR|PS 0.078 . Chro.30479 289 PMSNSIK|DF 0.088 . Chro.30479 293 SIKDFQK|FD 0.067 . Chro.30479 300 FDPLSLK|KG 0.060 . Chro.30479 301 DPLSLKK|GS 0.076 . Chro.30479 304 SLKKGSK|IY 0.070 . Chro.30479 312 YSYYLSK|SK 0.075 . Chro.30479 314 YYLSKSK|IS 0.053 . Chro.30479 324 NSAISLK|VA 0.069 . Chro.30479 333 IGYDYMK|NY 0.056 . Chro.30479 354 EFFTEIR|TE 0.065 . Chro.30479 357 TEIRTEK|QL 0.190 . Chro.30479 386 NVVSSNK|NI 0.064 . Chro.30479 409 FSPDSNK|IT 0.069 . Chro.30479 419 TLFNEAK|ES 0.071 . Chro.30479 427 SFIQTMK|EK 0.061 . Chro.30479 429 IQTMKEK|IV 0.077 . Chro.30479 434 EKIVNIK|DL 0.079 . Chro.30479 447 SDEISTK|TY 0.061 . Chro.30479 454 TYDFDWK|KN 0.059 . Chro.30479 455 YDFDWKK|NY 0.086 . Chro.30479 463 YIDYAEK|LT 0.062 . Chro.30479 474 NFLDWFK|QI 0.059 . Chro.30479 495 SPNSEEK|NV 0.099 . Chro.30479 511 VPQNFTK|FT 0.070 . Chro.30479 525 FSIENIR|TY 0.077 . ____________________________^_________________

  • Fasta :-

    >Chro.30479 ATGGGAAAATATAATAATTTTTTTTATTATCCTAATAAGAATATTCCTTCACCAAAATCA ATAATTCAATTTAGATTCATTTTCCCTTTGGATAAAATAACTGATAATTTTTCAGAATTT TCAACAGATTCAGTTACATTTAATTTACTATTTTTAATATTCACAGATATATTTGGACTT GTTTTAACAAGAAATTTCTTTGAAATTTTATCTGCAAAATATTCAATTGATACGGATGAT GTAAGGTTTATAAGTGATTCTAATAAAACAAACCAATTAACATTAGTAATTTCTGGTTTT TCTGATCATATTGAAGAAATTACTTCTGAATTAAAATCTTTTATTCAAAATTTTTCTACA TATATTACAAATAATGACTTTGAATTGGAAAAAGAGAAACTTGCGATCGGTTTTAAAAGC TATATTTTAAATCCAACAATTAGTTCTGATATAGTTGAAATGAAGAATAAACTATTTTTT AATCAAGATTATTCTTTTGAAACACAATTATCACGACTTGAAAGTATAAATTTTGAAGAA TTTATTAAGTTTTCAGAATTTTATTTAAATAATTACAAATTGGAGGGATTTATAGTAGGG AATTTAAATCCATTGCAATCTATTAACATAATTAATACAATTTCGACTATATCTTCATTA GAAAATGGAAATTCAAGTACAAATTCAATTCATAATTTACTTTCAATTTTATCTATGGGG GTAAATCAATCTGTAAAACTTCTTAGATTACTTTATTCTTCTATCACTGGTCTTTTTGTA AGTATGGATCTCAAAGATGAAGATTATCTAAATGTTCAAGAACATTTGAGACCTTCACCA CCTTTACCAATGTCTAATTCAATTAAGGATTTCCAAAAATTTGATCCACTATCTTTAAAA AAAGGTTCCAAAATTTACTCTTATTATCTTTCAAAATCAAAAATCTCAGTCAACAGTGCA ATTTCTTTGAAAGTTGCAATAGGGTACGATTATATGAAGAATTATATTCTCACAAATATT TTGATTTTAATTATTTCGGAAGAATTCTTTACGGAAATTCGTACGGAAAAGCAACTCGGA TATGTAGTAGGAGCAAGCTATGAAGATATTGTTGATCATGTCTCTGGAATTAATTTTAAT GTTGTTTCTTCCAATAAAAATATAGAAACATTAGCTAACAATGTGCTTGAATTTTGGAAC GATTGGTTTTCTCCAGATTCTAACAAAATTACTGAAACACTATTTAATGAAGCTAAAGAA TCATTTATTCAAACTATGAAGGAAAAAATTGTAAATATTAAAGACCTATTTTCACATTTT TCAGATGAAATATCAACTAAGACTTATGATTTTGACTGGAAGAAAAATTACATTGATTAT GCAGAAAAGCTTACATATCAAAATTTCCTTGATTGGTTTAAACAGATTTACAACAATTCT AATTTATTCATGCTTGCAATTCAATCTCCTAATTCTGAAGAAAAAAACGTTTTAGATACT CTATCTAACTTCGTTCCTCAAAACTTTACAAAGTTCACTCCATCTGATTCTTTGTTCAGT ATTGAAAATATTAGAACTTATAACCAGTGGAATGTTTGTAATGCAATATAA
  • Download Fasta

  • Fasta :-

    MGKYNNFFYYPNKNIPSPKSIIQFRFIFPLDKITDNFSEFSTDSVTFNLLFLIFTDIFGL VLTRNFFEILSAKYSIDTDDVRFISDSNKTNQLTLVISGFSDHIEEITSELKSFIQNFST YITNNDFELEKEKLAIGFKSYILNPTISSDIVEMKNKLFFNQDYSFETQLSRLESINFEE FIKFSEFYLNNYKLEGFIVGNLNPLQSINIINTISTISSLENGNSSTNSIHNLLSILSMG VNQSVKLLRLLYSSITGLFVSMDLKDEDYLNVQEHLRPSPPLPMSNSIKDFQKFDPLSLK KGSKIYSYYLSKSKISVNSAISLKVAIGYDYMKNYILTNILILIISEEFFTEIRTEKQLG YVVGASYEDIVDHVSGINFNVVSSNKNIETLANNVLEFWNDWFSPDSNKITETLFNEAKE SFIQTMKEKIVNIKDLFSHFSDEISTKTYDFDWKKNYIDYAEKLTYQNFLDWFKQIYNNS NLFMLAIQSPNSEEKNVLDTLSNFVPQNFTKFTPSDSLFSIENIRTYNQWNVCNAI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.30479520 SDSLFSIENI0.99unspChro.30479520 SDSLFSIENI0.99unspChro.30479520 SDSLFSIENI0.99unspChro.30479366 SVVGASYEDI0.996unspChro.30479492 SQSPNSEEKN0.997unsp

Chro.30479      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India