Chro.40039 | proteasome subunit

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.40039	OTHER	0.999609	0.000316	0.000075

No Results

Fasta :-
>Chro.40039 MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGK SLEKIYTIDRHIIAAVAGLTADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQS YTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWKATAIGQNNQTATSLLKQEWN EDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK VQKEIASENSAKNNSETDNQS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/472 Sequence name : 472 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.225 ChDiff : -6 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.912 0.191 0.669 MesoH : -0.776 0.548 -0.369 0.251 MuHd_075 : 23.006 4.092 3.592 6.083 MuHd_095 : 14.149 3.671 2.859 2.333 MuHd_100 : 17.816 7.474 3.532 4.255 MuHd_105 : 18.758 9.543 3.671 5.499 Hmax_075 : -3.850 -5.250 -3.650 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.289 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9013 0.0987 DFMC : 0.8708 0.1292

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 Chro.40039 MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGKSLEKIYTIDRHIIAAVAGLT 80 ADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQSYTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWK 160 ATAIGQNNQTATSLLKQEWNEDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK 240 VQKEIASENSAKNNSETDNQS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40039 3 ----MSR|RY 0.085 . Chro.40039 4 ---MSRR|YD 0.173 . Chro.40039 8 SRRYDSR|TT 0.113 . Chro.40039 17 TFSPEGR|LY 0.096 . Chro.40039 40 TVGILCK|EG 0.060 . Chro.40039 49 VILGADK|AI 0.061 . Chro.40039 54 DKAIVSK|LL 0.077 . Chro.40039 60 KLLDQGK|SL 0.096 . Chro.40039 64 QGKSLEK|IY 0.059 . Chro.40039 70 KIYTIDR|HI 0.095 . Chro.40039 91 ILIAQAR|ID 0.107 . Chro.40039 96 ARIDSQR|YQ 0.124 . Chro.40039 117 VTQICDR|KQ 0.084 . Chro.40039 118 TQICDRK|QS 0.100 . Chro.40039 128 TQFGGLR|PF 0.094 . Chro.40039 141 LFAGYDK|NY 0.072 . Chro.40039 160 GNFSGWK|AT 0.075 . Chro.40039 176 TATSLLK|QE 0.059 . Chro.40039 194 GLHLVAK|VL 0.086 . Chro.40039 198 VAKVLTK|TM 0.064 . Chro.40039 209 TSPTADK|FE 0.075 . Chro.40039 223 HNNESNK|CS 0.078 . Chro.40039 227 SNKCSQK|IL 0.085 . Chro.40039 232 QKILSEK|EI 0.077 . Chro.40039 240 IGELLEK|VQ 0.051 . Chro.40039 243 LLEKVQK|EI 0.064 . Chro.40039 252 ASENSAK|NN 0.082 . ____________________________^_________________

Fasta :-
>Chro.40039 ATGTCACGAAGATACGATTCTAGAACAACAACATTTTCTCCTGAAGGTCGATTATATCAA GTAGAATATGCATTGGAAGCAATTAATAATGCAGCTCCAACAGTTGGGATACTTTGTAAA GAAGGAGTAATTCTGGGAGCAGATAAGGCAATAGTATCAAAATTACTTGATCAAGGAAAG TCACTGGAGAAAATTTATACAATAGATCGTCATATTATAGCTGCTGTAGCTGGTTTGACA GCTGATGCAAATATTTTGATTGCCCAAGCACGTATAGACTCTCAAAGATATCAATATACA TATGGCGAAGAACAGCCAGTAGAACAATTAGTTACTCAAATATGCGATAGAAAACAAAGT TATACACAATTTGGTGGATTGAGACCATTTGGTGTATCATTTTTATTTGCTGGATATGAT AAGAATTATGGATACCAATTATATCAGTCTGATCCATCTGGTAACTTCTCGGGATGGAAG GCTACTGCGATTGGTCAAAATAACCAAACCGCTACATCTTTATTGAAACAAGAATGGAAC GAGGACTTAACATTAGAACAAGGTCTTCACTTAGTTGCAAAAGTTTTAACCAAGACTATG GATACAACTTCTCCTACAGCAGATAAATTTGAGTTTTCTATTTTGACTCACAATAATGAA TCTAATAAGTGCAGCCAGAAAATTTTGTCTGAAAAAGAAATTGGAGAATTGTTGGAAAAA GTCCAAAAAGAAATTGCTTCTGAAAATAGTGCTAAGAATAACTCTGAAACTGATAACCAG AGTTAA
Download Fasta

Fasta :-

MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGK SLEKIYTIDRHIIAAVAGLTADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQS YTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWKATAIGQNNQTATSLLKQEWN EDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK VQKEIASENSAKNNSETDNQS

Proteasome subunits

title: active site
coordinates: A32,D48,A50,K64,Q166

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.40039	S	2	0.513	0.085	Chro.40039	S	261	0.507	0.017

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.40039	S	2	0.513	0.085	Chro.40039	S	261	0.507	0.017

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	Chro.40039	204 S	MDTTSPTAD	0.992	unsp	Chro.40039	204 S	MDTTSPTAD	0.992	unsp	Chro.40039	204 S	MDTTSPTAD	0.992	unsp	Chro.40039	230 S	QKILSEKEI	0.996	unsp	Chro.40039	255 S	AKNNSETDN	0.991	unsp	Chro.40039	7 S	RRYDSRTTT	0.995	unsp	Chro.40039	13 S	TTTFSPEGR	0.99	unsp

Chro.40039 | proteasome subunit

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.40039

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India