Chro.40078 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
Chro.40078OTHER0.7678120.1554080.076779
No Results

  • Fasta :-

    >Chro.40078 MPNKFIFRKSLKYAKILLGIHLIQKYGFSICITDGPSMIPTIGPKRELLLYEKLSISLSR IFKLNGNFPVNRNDIIIANSVENPEILVCKRSIAKVXYD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/652 Sequence name : 652 Sequence length : 99 VALUES OF COMPUTED PARAMETERS Coef20 : 4.097 CoefTot : -1.172 ChDiff : 8 ZoneTo : 33 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.088 1.512 0.184 0.593 MesoH : -0.755 0.359 -0.391 0.205 MuHd_075 : 31.909 22.599 9.217 7.365 MuHd_095 : 34.877 16.064 9.335 7.290 MuHd_100 : 34.011 16.564 8.981 7.270 MuHd_105 : 33.917 17.218 9.628 7.541 Hmax_075 : 8.663 18.900 1.128 5.833 Hmax_095 : 8.400 9.450 0.309 4.043 Hmax_100 : 11.600 14.900 0.804 5.260 Hmax_105 : 14.200 15.300 3.536 5.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1694 0.8306 DFMC : 0.2553 0.7447 This protein is probably imported in mitochondria. f(Ser) = 0.0606 f(Arg) = 0.0303 CMi = 0.53908 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 99 Chro.40078 MPNKFIFRKSLKYAKILLGIHLIQKYGFSICITDGPSMIPTIGPKRELLLYEKLSISLSRIFKLNGNFPVNRNDIIIANS 80 VENPEILVCKRSIAKVXYD 160 ................................................................................ 80 ................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40078 4 ---MPNK|FI 0.066 . Chro.40078 8 PNKFIFR|KS 0.079 . Chro.40078 9 NKFIFRK|SL 0.126 . Chro.40078 12 IFRKSLK|YA 0.080 . Chro.40078 15 KSLKYAK|IL 0.061 . Chro.40078 25 GIHLIQK|YG 0.062 . Chro.40078 45 IPTIGPK|RE 0.051 . Chro.40078 46 PTIGPKR|EL 0.124 . Chro.40078 53 ELLLYEK|LS 0.052 . Chro.40078 60 LSISLSR|IF 0.086 . Chro.40078 63 SLSRIFK|LN 0.146 . Chro.40078 72 GNFPVNR|ND 0.095 . Chro.40078 90 PEILVCK|RS 0.064 . Chro.40078 91 EILVCKR|SI 0.289 . Chro.40078 95 CKRSIAK|VX 0.067 . ____________________________^_________________

  • Fasta :-

    >Chro.40078 ATGCCAAACAAATTCATTTTTAGAAAGAGCTTAAAATATGCCAAAATATTGTTGGGGATA CACTTAATTCAAAAATATGGGTTTAGTATATGTATTACGGATGGACCTTCAATGATTCCA ACAATCGGACCGAAGAGAGAACTTTTGCTCTATGAAAAACTTTCTATTTCTTTATCCAGA ATATTTAAACTGAATGGAAATTTTCCAGTCAACAGAAATGATATAATAATTGCAAATTCA GTGGAAAATCCAGAAATATTAGTTTGCAAGAGAAGTATTGCTAAAGTAAGNTATGATTAA
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  • Fasta :-

    MPNKFIFRKSLKYAKILLGIHLIQKYGFSICITDGPSMIPTIGPKRELLLYEKLSISLSR IFKLNGNFPVNRNDIIIANSVENPEILVCKRSIAKVXYD

  • title: Catalytic site
  • coordinates: S37,K90
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.4007810 SIFRKSLKYA0.995unspChro.4007880 SIIANSVENP0.991unsp

Chro.40078      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India