Chro.40138 | 26S proteasome AAA-ATPase subunit RPT2a

_IDPredictionOTHERSPmTPCS_Position
Chro.40138OTHER0.9999730.0000010.000026
No Results

  • Fasta :-

    >Chro.40138 MGNSHGVLGEGGMKNNRKSKNNGKDEKKKLESAPPPMEMKRKRKQKGPPQYARLPAVVPN AKCRLRLLKYERIKDYLMMEQEFITSMESVKPSAETAEEEHNKVDDLRGSPMNIGTLEEI IDENHAIVSSSVGSEYYVNILSFVDKNQLEPGSSVLLHNKVYSVVGIMNDEVDPLVSVMK VDKAPLESYADIGGLEQQIQEIKEAVEIPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAVGTKRH DSQSGGERDIQRTMLELLNQLDGFEARGDVKVIMATNKIESLDPALIRPGRIDRKIELPN PDCKTKRRIFQIHTSKMTLSDDVDLEEFIMAKDDISGADIKAICTEAGLLALRERRMRVT QEDLRKAKEKALYRKKGGIPEGLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/884 Sequence name : 884 Sequence length : 445 VALUES OF COMPUTED PARAMETERS Coef20 : 2.880 CoefTot : -2.613 ChDiff : -4 ZoneTo : 24 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.594 1.035 -0.028 0.411 MesoH : -0.840 0.246 -0.444 0.204 MuHd_075 : 17.070 16.561 7.116 3.298 MuHd_095 : 29.626 11.992 7.791 5.756 MuHd_100 : 34.637 11.207 9.391 6.245 MuHd_105 : 33.826 7.722 9.013 5.523 Hmax_075 : -8.800 1.750 -3.613 -0.480 Hmax_095 : 3.850 -0.600 -1.987 1.663 Hmax_100 : -3.200 -4.100 -2.992 0.800 Hmax_105 : 2.567 -4.200 -1.739 1.307 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9698 0.0302 DFMC : 0.9585 0.0415
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 445 Chro.40138 MGNSHGVLGEGGMKNNRKSKNNGKDEKKKLESAPPPMEMKRKRKQKGPPQYARLPAVVPNAKCRLRLLKYERIKDYLMME 80 QEFITSMESVKPSAETAEEEHNKVDDLRGSPMNIGTLEEIIDENHAIVSSSVGSEYYVNILSFVDKNQLEPGSSVLLHNK 160 VYSVVGIMNDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVEIPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL 240 AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAVGTKRHDSQSGGERDIQRTMLELLNQ 320 LDGFEARGDVKVIMATNKIESLDPALIRPGRIDRKIELPNPDCKTKRRIFQIHTSKMTLSDDVDLEEFIMAKDDISGADI 400 KAICTEAGLLALRERRMRVTQEDLRKAKEKALYRKKGGIPEGLYL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40138 14 LGEGGMK|NN 0.059 . Chro.40138 17 GGMKNNR|KS 0.082 . Chro.40138 18 GMKNNRK|SK 0.141 . Chro.40138 20 KNNRKSK|NN 0.275 . Chro.40138 24 KSKNNGK|DE 0.081 . Chro.40138 27 NNGKDEK|KK 0.059 . Chro.40138 28 NGKDEKK|KL 0.106 . Chro.40138 29 GKDEKKK|LE 0.137 . Chro.40138 40 PPPMEMK|RK 0.062 . Chro.40138 41 PPMEMKR|KR 0.195 . Chro.40138 42 PMEMKRK|RK 0.114 . Chro.40138 43 MEMKRKR|KQ 0.193 . Chro.40138 44 EMKRKRK|QK 0.345 . Chro.40138 46 KRKRKQK|GP 0.236 . Chro.40138 53 GPPQYAR|LP 0.092 . Chro.40138 62 AVVPNAK|CR 0.057 . Chro.40138 64 VPNAKCR|LR 0.084 . Chro.40138 66 NAKCRLR|LL 0.076 . Chro.40138 69 CRLRLLK|YE 0.120 . Chro.40138 72 RLLKYER|IK 0.079 . Chro.40138 74 LKYERIK|DY 0.075 . Chro.40138 91 TSMESVK|PS 0.065 . Chro.40138 103 AEEEHNK|VD 0.060 . Chro.40138 108 NKVDDLR|GS 0.099 . Chro.40138 146 ILSFVDK|NQ 0.070 . Chro.40138 160 SVLLHNK|VY 0.069 . Chro.40138 180 PLVSVMK|VD 0.061 . Chro.40138 183 SVMKVDK|AP 0.061 . Chro.40138 203 QQIQEIK|EA 0.065 . Chro.40138 222 YDDIGIK|PP 0.058 . Chro.40138 225 IGIKPPK|GV 0.088 . Chro.40138 237 GPPGTGK|TL 0.061 . Chro.40138 242 GKTLLAK|AV 0.077 . Chro.40138 254 TSATFLR|VV 0.199 . Chro.40138 263 GSELIQK|YL 0.086 . Chro.40138 270 YLGDGPK|LV 0.071 . Chro.40138 273 DGPKLVR|EL 0.075 . Chro.40138 277 LVRELFR|VA 0.129 . Chro.40138 298 IDAVGTK|RH 0.060 . Chro.40138 299 DAVGTKR|HD 0.219 . Chro.40138 308 SQSGGER|DI 0.119 . Chro.40138 312 GERDIQR|TM 0.092 . Chro.40138 327 LDGFEAR|GD 0.132 . Chro.40138 331 EARGDVK|VI 0.064 . Chro.40138 338 VIMATNK|IE 0.059 . Chro.40138 348 LDPALIR|PG 0.080 . Chro.40138 351 ALIRPGR|ID 0.258 . Chro.40138 354 RPGRIDR|KI 0.241 . Chro.40138 355 PGRIDRK|IE 0.071 . Chro.40138 364 LPNPDCK|TK 0.071 . Chro.40138 366 NPDCKTK|RR 0.070 . Chro.40138 367 PDCKTKR|RI 0.261 . Chro.40138 368 DCKTKRR|IF 0.137 . Chro.40138 376 FQIHTSK|MT 0.060 . Chro.40138 392 EEFIMAK|DD 0.068 . Chro.40138 401 ISGADIK|AI 0.071 . Chro.40138 413 AGLLALR|ER 0.064 . Chro.40138 415 LLALRER|RM 0.082 . Chro.40138 416 LALRERR|MR 0.399 . Chro.40138 418 LRERRMR|VT 0.232 . Chro.40138 425 VTQEDLR|KA 0.071 . Chro.40138 426 TQEDLRK|AK 0.103 . Chro.40138 428 EDLRKAK|EK 0.109 . Chro.40138 430 LRKAKEK|AL 0.095 . Chro.40138 434 KEKALYR|KK 0.103 . Chro.40138 435 EKALYRK|KG 0.094 . Chro.40138 436 KALYRKK|GG 0.097 . ____________________________^_________________

  • Fasta :-

    >Chro.40138 ATGGGAAATTCACATGGTGTACTTGGGGAGGGGGGGATGAAAAATAATAGGAAGTCAAAG AACAATGGTAAAGATGAGAAAAAGAAATTAGAATCCGCCCCACCTCCAATGGAAATGAAA AGGAAGAGAAAGCAAAAAGGCCCACCACAATATGCTAGATTGCCGGCAGTAGTTCCAAAT GCCAAATGTAGACTAAGATTATTAAAGTATGAGAGAATTAAGGACTATTTAATGATGGAG CAAGAATTTATTACAAGTATGGAAAGTGTAAAACCATCAGCAGAGACAGCAGAAGAAGAA CACAATAAAGTCGATGATTTAAGAGGGTCACCAATGAATATTGGAACTTTAGAAGAGATC ATAGATGAGAATCATGCAATAGTTTCATCATCAGTAGGGTCTGAGTATTATGTAAATATT TTGTCGTTTGTAGACAAGAACCAACTGGAACCTGGAAGTTCAGTATTATTACATAATAAA GTATATTCTGTTGTTGGAATAATGAATGATGAGGTGGATCCTTTGGTTTCTGTAATGAAA GTTGATAAGGCTCCTTTGGAAAGCTATGCAGATATTGGTGGTTTAGAGCAGCAGATCCAA GAAATAAAGGAGGCTGTAGAAATTCCTTTAACACATCCTGAATTATATGATGACATTGGT ATTAAACCTCCAAAAGGAGTAATTTTGTATGGTCCTCCAGGAACTGGTAAAACTCTTTTA GCTAAAGCTGTTGCAAATGAAACTTCAGCAACCTTTTTAAGGGTAGTTGGAAGTGAACTA ATTCAAAAATATTTAGGAGATGGACCAAAACTTGTACGTGAGTTATTCAGAGTTGCTGAG GAAAATGCTCCAAGTATTGTTTTTATTGATGAAATTGATGCTGTTGGTACTAAGAGACAT GACTCTCAAAGTGGAGGTGAGAGAGATATTCAAAGAACTATGCTTGAATTACTTAATCAA TTGGATGGATTTGAGGCAAGAGGGGATGTTAAAGTTATTATGGCAACTAATAAAATAGAA AGTCTAGATCCAGCTCTTATTAGACCGGGAAGAATTGATAGAAAGATTGAACTTCCCAAT CCAGACTGTAAAACTAAAAGAAGAATCTTCCAAATTCATACAAGCAAAATGACTCTATCT GATGATGTTGACTTGGAGGAATTTATCATGGCAAAAGATGATATTAGCGGGGCAGATATT AAGGCAATTTGTACCGAAGCTGGTCTTCTGGCTCTTAGAGAAAGAAGGATGAGAGTTACA CAAGAAGATCTCAGGAAAGCTAAAGAAAAGGCTTTATATAGAAAGAAGGGTGGAATACCT GAAGGCTTATATCTCTAG
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  • Fasta :-

    No Results
  • title: ATP binding site
  • coordinates: P232,P233,G234,T235,G236,K237,T238,L239,D290,N337
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.40138110 SDLRGSPMNI0.991unspChro.40138110 SDLRGSPMNI0.991unspChro.40138110 SDLRGSPMNI0.991unspChro.40138302 SKRHDSQSGG0.997unspChro.40138304 SHDSQSGGER0.994unspChro.40138396 SKDDISGADI0.99unspChro.4013819 SNNRKSKNNG0.996unspChro.4013889 STSMESVKPS0.994unsp

Chro.40138      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India