Chro.40175 | hypothetical protein

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No Results
No Results

  • Fasta :-

    >Chro.40175 MLYKLSPNKYTPWYVNGANHCNIELNWRDELISKVRQFILYLSPKPKIQSSKSSYMTHDH TLSISRISTLSSQGFENLYHELDDDDDDDDDNIYDNCQEYESTSQEYTNNNKDSCYYREK SYPIPKNHTNNHLNYHNTTKSSNKYFNNQSSRMKIEENNTISNSSISSKSNFTHSNTYHP NTSNNSHSHNYYSQTLNSAYQTPSSGNNHQISDQVVFGVSIYDDNINLHANMYSGNCRKP KNFTRIFGL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/727 Sequence name : 727 Sequence length : 249 VALUES OF COMPUTED PARAMETERS Coef20 : 3.133 CoefTot : -1.731 ChDiff : -4 ZoneTo : 23 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : -0.335 0.400 -0.310 0.296 MesoH : -0.985 -0.507 -0.661 -0.021 MuHd_075 : 20.423 13.121 7.118 2.751 MuHd_095 : 23.618 12.456 9.970 4.741 MuHd_100 : 17.545 8.735 8.087 2.927 MuHd_105 : 19.592 13.280 8.878 3.470 Hmax_075 : 2.567 8.283 -1.437 3.710 Hmax_095 : 5.700 0.300 0.891 3.159 Hmax_100 : 4.200 1.400 0.927 2.990 Hmax_105 : 5.717 4.600 1.532 2.007 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8679 0.1321 DFMC : 0.8648 0.1352
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 249 Chro.40175 MLYKLSPNKYTPWYVNGANHCNIELNWRDELISKVRQFILYLSPKPKIQSSKSSYMTHDHTLSISRISTLSSQGFENLYH 80 ELDDDDDDDDDNIYDNCQEYESTSQEYTNNNKDSCYYREKSYPIPKNHTNNHLNYHNTTKSSNKYFNNQSSRMKIEENNT 160 ISNSSISSKSNFTHSNTYHPNTSNNSHSHNYYSQTLNSAYQTPSSGNNHQISDQVVFGVSIYDDNINLHANMYSGNCRKP 240 KNFTRIFGL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40175 4 ---MLYK|LS 0.057 . Chro.40175 9 YKLSPNK|YT 0.066 . Chro.40175 28 NIELNWR|DE 0.074 . Chro.40175 34 RDELISK|VR 0.055 . Chro.40175 36 ELISKVR|QF 0.082 . Chro.40175 45 ILYLSPK|PK 0.069 . Chro.40175 47 YLSPKPK|IQ 0.082 . Chro.40175 52 PKIQSSK|SS 0.092 . Chro.40175 66 HTLSISR|IS 0.068 . Chro.40175 112 EYTNNNK|DS 0.060 . Chro.40175 118 KDSCYYR|EK 0.107 . Chro.40175 120 SCYYREK|SY 0.075 . Chro.40175 126 KSYPIPK|NH 0.058 . Chro.40175 140 NYHNTTK|SS 0.095 . Chro.40175 144 TTKSSNK|YF 0.069 . Chro.40175 152 FNNQSSR|MK 0.119 . Chro.40175 154 NQSSRMK|IE 0.068 . Chro.40175 169 NSSISSK|SN 0.114 . Chro.40175 238 MYSGNCR|KP 0.084 . Chro.40175 239 YSGNCRK|PK 0.072 . Chro.40175 241 GNCRKPK|NF 0.204 . Chro.40175 245 KPKNFTR|IF 0.123 . ____________________________^_________________

  • Fasta :-

    >Chro.40175 ATGCTTTATAAGCTTTCTCCTAATAAATACACTCCATGGTATGTAAATGGGGCTAACCAT TGTAATATTGAACTTAATTGGAGAGATGAACTTATTTCAAAAGTTAGACAATTTATTCTT TATTTATCTCCAAAGCCTAAAATTCAATCATCTAAATCTTCTTATATGACTCATGATCAT ACTTTATCAATATCTAGAATATCTACATTATCTAGTCAAGGATTTGAAAACTTATATCAT GAATTAGATGATGACGACGATGATGATGATGATAATATTTACGATAATTGTCAAGAATAT GAATCTACAAGTCAGGAGTATACTAATAACAATAAAGATAGTTGTTATTATAGAGAAAAA TCATATCCTATCCCAAAAAACCATACAAATAATCATTTAAATTATCACAATACAACAAAA TCATCCAATAAATACTTTAATAATCAATCTTCTAGAATGAAAATAGAAGAAAATAATACT ATTTCTAATTCTTCAATTTCTTCTAAGTCAAACTTTACTCATTCGAATACATACCATCCA AATACTTCAAACAATTCTCATTCACATAATTACTATTCTCAAACACTAAATAGTGCTTAT CAAACTCCTTCTTCTGGAAATAATCATCAAATATCTGATCAAGTTGTCTTTGGTGTATCT ATATATGATGATAATATTAATTTGCATGCAAATATGTATTCTGGTAATTGTCGAAAACCT AAAAATTTTACTCGTATTTTTGGTCTTTAG
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  • Fasta :-

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No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.4017553 SQSSKSSYMT0.994unspChro.40175167 SNSSISSKSN0.995unsp

Chro.40175      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India