Chro.40239 | preprocathepsin c precursor

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.40239SP0.0044310.9955370.000031CS pos: 21-22. VKC-DL. Pr: 0.9546
No Results

  • Fasta :-

    >Chro.40239 MFKSLGKTILLAFFYIVFVKCDLPIHVTTADIIGRWEFQYSEPANNWIDGCGSGVPNKNT QNLQPSLADYNKWLTTKTNGKLEKLDLILTDLLFSENDYSDLDRSMFPGRNDWTFLAVKD PENGKVVGRWTMVYDEGFEIVINNMTIFGIMKYNLLNNGNCSAKDGDNETTKGETLCYET DSSQIQIGWYYLRDSKKRGCVSGRKDESYENSLDIVKNRVEIPIKKSFESSIRSLSNSLQ EFAHRHNRKDSKNWRARSNFSLTDVAFSHHSYYMNAVNFRKIHPFRIMGSQHSSFIEMFK DGVGNVDNYDNIVDSIFACNVVRRKTDEVKLPSSFSIGDPFTDEKYNDFPFNQGNCGSCY AVSSVYILAKRAELKLNKLTNGASREEKILLSPQSVLSCSPFNQGCEGGYPFLVGRQAEE IGISSEKCMGYYADSNQECNFSPFITPEIEDRIYCEEDERMYAEEYGYVGGCYGCCDEDR MKEEIFKNGPIAVAMHIDTSLLVYENGVYDSIPNDHTKYCDLPNKQLNGWEYTNHAIAIV GWGEENGIPYWIIRNSWGANWGNKGYAKIRRGKNIGGIENQAVFIDPDFSRGMGFSLLNK YQNSTAYRTNLPDIKDSPQGSENVNVEIVNGGVDQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/217 Sequence name : 217 Sequence length : 635 VALUES OF COMPUTED PARAMETERS Coef20 : 4.481 CoefTot : -0.127 ChDiff : -17 ZoneTo : 21 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 2.100 0.202 0.717 MesoH : -0.737 0.001 -0.399 0.185 MuHd_075 : 18.145 10.975 5.705 4.175 MuHd_095 : 27.739 21.942 8.340 7.041 MuHd_100 : 21.064 16.447 7.299 5.394 MuHd_105 : 21.800 13.248 7.421 4.908 Hmax_075 : 20.200 21.100 3.673 7.020 Hmax_095 : 21.262 23.013 3.975 7.770 Hmax_100 : 21.400 24.400 4.407 8.020 Hmax_105 : 17.900 17.150 4.332 6.151 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7563 0.2437 DFMC : 0.9237 0.0763
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 635 Chro.40239 MFKSLGKTILLAFFYIVFVKCDLPIHVTTADIIGRWEFQYSEPANNWIDGCGSGVPNKNTQNLQPSLADYNKWLTTKTNG 80 KLEKLDLILTDLLFSENDYSDLDRSMFPGRNDWTFLAVKDPENGKVVGRWTMVYDEGFEIVINNMTIFGIMKYNLLNNGN 160 CSAKDGDNETTKGETLCYETDSSQIQIGWYYLRDSKKRGCVSGRKDESYENSLDIVKNRVEIPIKKSFESSIRSLSNSLQ 240 EFAHRHNRKDSKNWRARSNFSLTDVAFSHHSYYMNAVNFRKIHPFRIMGSQHSSFIEMFKDGVGNVDNYDNIVDSIFACN 320 VVRRKTDEVKLPSSFSIGDPFTDEKYNDFPFNQGNCGSCYAVSSVYILAKRAELKLNKLTNGASREEKILLSPQSVLSCS 400 PFNQGCEGGYPFLVGRQAEEIGISSEKCMGYYADSNQECNFSPFITPEIEDRIYCEEDERMYAEEYGYVGGCYGCCDEDR 480 MKEEIFKNGPIAVAMHIDTSLLVYENGVYDSIPNDHTKYCDLPNKQLNGWEYTNHAIAIVGWGEENGIPYWIIRNSWGAN 560 WGNKGYAKIRRGKNIGGIENQAVFIDPDFSRGMGFSLLNKYQNSTAYRTNLPDIKDSPQGSENVNVEIVNGGVDQ 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40239 3 ----MFK|SL 0.101 . Chro.40239 7 MFKSLGK|TI 0.060 . Chro.40239 20 FYIVFVK|CD 0.061 . Chro.40239 35 TADIIGR|WE 0.083 . Chro.40239 58 GSGVPNK|NT 0.072 . Chro.40239 72 SLADYNK|WL 0.075 . Chro.40239 77 NKWLTTK|TN 0.073 . Chro.40239 81 TTKTNGK|LE 0.055 . Chro.40239 84 TNGKLEK|LD 0.062 . Chro.40239 104 DYSDLDR|SM 0.174 . Chro.40239 110 RSMFPGR|ND 0.103 . Chro.40239 119 WTFLAVK|DP 0.064 . Chro.40239 125 KDPENGK|VV 0.072 . Chro.40239 129 NGKVVGR|WT 0.116 . Chro.40239 152 TIFGIMK|YN 0.060 . Chro.40239 164 NGNCSAK|DG 0.087 . Chro.40239 172 GDNETTK|GE 0.066 . Chro.40239 193 IGWYYLR|DS 0.097 . Chro.40239 196 YYLRDSK|KR 0.080 . Chro.40239 197 YLRDSKK|RG 0.099 . Chro.40239 198 LRDSKKR|GC 0.275 . Chro.40239 204 RGCVSGR|KD 0.124 . Chro.40239 205 GCVSGRK|DE 0.074 . Chro.40239 217 NSLDIVK|NR 0.050 . Chro.40239 219 LDIVKNR|VE 0.105 . Chro.40239 225 RVEIPIK|KS 0.058 . Chro.40239 226 VEIPIKK|SF 0.155 . Chro.40239 233 SFESSIR|SL 0.170 . Chro.40239 245 LQEFAHR|HN 0.082 . Chro.40239 248 FAHRHNR|KD 0.348 . Chro.40239 249 AHRHNRK|DS 0.118 . Chro.40239 252 HNRKDSK|NW 0.070 . Chro.40239 255 KDSKNWR|AR 0.101 . Chro.40239 257 SKNWRAR|SN 0.204 . Chro.40239 280 MNAVNFR|KI 0.151 . Chro.40239 281 NAVNFRK|IH 0.071 . Chro.40239 286 RKIHPFR|IM 0.142 . Chro.40239 300 SFIEMFK|DG 0.066 . Chro.40239 323 FACNVVR|RK 0.083 . Chro.40239 324 ACNVVRR|KT 0.209 . Chro.40239 325 CNVVRRK|TD 0.096 . Chro.40239 330 RKTDEVK|LP 0.058 . Chro.40239 345 DPFTDEK|YN 0.065 . Chro.40239 370 SVYILAK|RA 0.077 . Chro.40239 371 VYILAKR|AE 0.097 . Chro.40239 375 AKRAELK|LN 0.060 . Chro.40239 378 AELKLNK|LT 0.059 . Chro.40239 385 LTNGASR|EE 0.080 . Chro.40239 388 GASREEK|IL 0.135 . Chro.40239 416 YPFLVGR|QA 0.146 . Chro.40239 427 IGISSEK|CM 0.066 . Chro.40239 452 TPEIEDR|IY 0.096 . Chro.40239 460 YCEEDER|MY 0.073 . Chro.40239 480 GCCDEDR|MK 0.115 . Chro.40239 482 CDEDRMK|EE 0.055 . Chro.40239 487 MKEEIFK|NG 0.064 . Chro.40239 518 IPNDHTK|YC 0.083 . Chro.40239 525 YCDLPNK|QL 0.067 . Chro.40239 554 IPYWIIR|NS 0.101 . Chro.40239 564 GANWGNK|GY 0.084 . Chro.40239 568 GNKGYAK|IR 0.066 . Chro.40239 570 KGYAKIR|RG 0.093 . Chro.40239 571 GYAKIRR|GK 0.218 . Chro.40239 573 AKIRRGK|NI 0.295 . Chro.40239 591 IDPDFSR|GM 0.115 . Chro.40239 600 GFSLLNK|YQ 0.058 . Chro.40239 608 QNSTAYR|TN 0.105 . Chro.40239 615 TNLPDIK|DS 0.069 . ____________________________^_________________

  • Fasta :-

    >Chro.40239 ATGTTTAAATCGTTGGGAAAGACCATATTACTTGCCTTTTTTTACATTGTATTTGTGAAA TGCGACTTACCAATACATGTTACAACCGCAGATATTATAGGAAGATGGGAATTTCAATAT TCTGAACCTGCTAATAATTGGATTGATGGTTGTGGTTCAGGGGTTCCAAACAAAAACACT CAAAATTTACAACCAAGCTTGGCTGATTATAACAAATGGCTCACTACAAAAACAAACGGC AAATTAGAGAAACTGGATCTGATATTAACTGATCTTTTATTTTCAGAAAACGATTATAGT GATTTAGATAGATCAATGTTTCCAGGAAGGAACGATTGGACATTTTTGGCAGTTAAAGAC CCCGAAAATGGAAAAGTTGTCGGGAGATGGACTATGGTTTATGATGAAGGATTTGAAATA GTCATAAACAATATGACAATTTTTGGAATAATGAAATATAACTTATTAAATAATGGAAAT TGTAGTGCAAAGGACGGAGATAATGAGACGACAAAGGGTGAAACTTTGTGTTATGAAACT GACTCGTCCCAAATTCAAATTGGTTGGTATTATCTCAGAGATTCTAAAAAAAGAGGTTGT GTCAGTGGTAGAAAAGATGAAAGTTACGAGAATTCACTTGATATTGTTAAAAATAGGGTA GAGATCCCAATCAAGAAATCTTTCGAGTCTAGTATAAGAAGTTTATCTAATTCATTGCAG GAATTTGCGCATAGGCATAATCGTAAAGATTCAAAAAACTGGAGGGCAAGAAGCAATTTT AGTTTAACAGATGTTGCTTTCTCGCATCATTCATATTATATGAATGCTGTAAATTTTAGA AAAATACATCCGTTTAGAATTATGGGTTCGCAGCACTCGTCTTTCATCGAGATGTTTAAG GACGGAGTGGGGAATGTTGATAATTACGACAACATTGTAGATTCAATTTTTGCATGTAAC GTAGTCAGGAGGAAAACTGATGAAGTAAAATTGCCCTCCTCATTTTCCATTGGTGATCCA TTTACAGACGAGAAATATAATGATTTTCCATTTAACCAAGGTAATTGTGGTTCATGTTAT GCTGTATCTTCTGTTTATATTTTAGCAAAAAGAGCAGAGTTGAAATTAAACAAATTGACA AATGGAGCTTCGAGAGAAGAAAAAATTTTGCTTTCACCACAATCAGTTCTTTCATGTTCT CCTTTTAATCAAGGATGCGAGGGTGGCTATCCATTTTTGGTCGGCAGACAAGCTGAAGAA ATAGGAATATCGTCGGAAAAGTGTATGGGATACTATGCGGATTCAAATCAGGAATGCAAC TTTTCGCCATTTATAACACCTGAAATTGAAGACCGAATTTATTGTGAAGAAGATGAAAGA ATGTATGCAGAAGAATATGGCTATGTAGGCGGTTGCTATGGTTGCTGCGATGAAGATAGG ATGAAAGAAGAAATATTTAAGAATGGTCCAATAGCAGTTGCAATGCATATAGATACATCC TTATTGGTATACGAAAATGGGGTATATGACTCAATACCTAATGATCATACCAAATATTGC GACTTACCAAATAAGCAATTAAATGGATGGGAATACACCAATCATGCTATTGCTATTGTA GGCTGGGGCGAAGAAAATGGTATTCCATATTGGATTATTCGAAACTCGTGGGGAGCTAAT TGGGGAAATAAGGGTTACGCGAAAATTAGAAGAGGAAAAAATATCGGCGGAATTGAAAAT CAAGCAGTATTTATTGATCCCGACTTTTCCAGGGGAATGGGCTTCTCTCTTCTGAATAAA TACCAAAATAGTACAGCTTACAGAACGAATTTACCAGATATCAAGGACAGCCCTCAAGGA TCAGAGAATGTTAATGTCGAAATTGTAAATGGCGGAGTTGATCAATAA
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  • Fasta :-

    MFKSLGKTILLAFFYIVFVKCDLPIHVTTADIIGRWEFQYSEPANNWIDGCGSGVPNKNT QNLQPSLADYNKWLTTKTNGKLEKLDLILTDLLFSENDYSDLDRSMFPGRNDWTFLAVKD PENGKVVGRWTMVYDEGFEIVINNMTIFGIMKYNLLNNGNCSAKDGDNETTKGETLCYET DSSQIQIGWYYLRDSKKRGCVSGRKDESYENSLDIVKNRVEIPIKKSFESSIRSLSNSLQ EFAHRHNRKDSKNWRARSNFSLTDVAFSHHSYYMNAVNFRKIHPFRIMGSQHSSFIEMFK DGVGNVDNYDNIVDSIFACNVVRRKTDEVKLPSSFSIGDPFTDEKYNDFPFNQGNCGSCY AVSSVYILAKRAELKLNKLTNGASREEKILLSPQSVLSCSPFNQGCEGGYPFLVGRQAEE IGISSEKCMGYYADSNQECNFSPFITPEIEDRIYCEEDERMYAEEYGYVGGCYGCCDEDR MKEEIFKNGPIAVAMHIDTSLLVYENGVYDSIPNDHTKYCDLPNKQLNGWEYTNHAIAIV GWGEENGIPYWIIRNSWGANWGNKGYAKIRRGKNIGGIENQAVFIDPDFSRGMGFSLLNK YQNSTAYRTNLPDIKDSPQGSENVNVEIVNGGVDQ

  • title: active site
  • coordinates: Q353,C359,H535,N555
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.40239195 SYLRDSKKRG0.998unspChro.40239195 SYLRDSKKRG0.998unspChro.40239195 SYLRDSKKRG0.998unspChro.40239208 SRKDESYENS0.996unspChro.4023999 YSENDYSDLD0.991unspChro.40239162 SNGNCSAKDG0.995unsp

Chro.40239      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India