Chro.40284 | 26S proteasome AAA-ATPase subunit RPT3

_IDPredictionOTHERSPmTPCS_Position
Chro.40284OTHER0.9999660.0000230.000011
No Results

  • Fasta :-

    >Chro.40284 MACSLGESQTIMSGNTDCEKYLYGSLKELEKELNFLSIQEDYIKDEQKGLKREFQRAKEE IKRIQSVPLVIGQFLEMIDSRYGIVSSTAGSNYYVRVLSTINREDLKPPASVALHRHSHA IVDILPPEADSSIQMLQMQEKPDVTYSDIGGMDIQKQEVREAVELPLVCPELYQQIGIDP PTGVLLYGPPGTGKTMLAKAVANHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENS PAIVFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD PALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSEEVDLEEYVSRPEKISAADIAAI SQEAGMQAVRKNRYVILPKDFEKGWKIHVKKSDRDFDFYSV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/455 Sequence name : 455 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 3.621 CoefTot : 0.125 ChDiff : -7 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 0.976 -0.006 0.456 MesoH : -0.528 0.219 -0.359 0.215 MuHd_075 : 9.478 4.868 1.769 2.841 MuHd_095 : 7.494 2.542 2.835 0.123 MuHd_100 : 13.822 6.755 1.857 1.503 MuHd_105 : 15.969 10.503 1.913 2.638 Hmax_075 : 7.817 6.533 1.601 3.255 Hmax_095 : 7.900 5.513 2.314 2.424 Hmax_100 : 9.100 7.000 2.099 2.640 Hmax_105 : 6.883 3.400 0.393 2.263 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9759 0.0241 DFMC : 0.9499 0.0501
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 Chro.40284 MACSLGESQTIMSGNTDCEKYLYGSLKELEKELNFLSIQEDYIKDEQKGLKREFQRAKEEIKRIQSVPLVIGQFLEMIDS 80 RYGIVSSTAGSNYYVRVLSTINREDLKPPASVALHRHSHAIVDILPPEADSSIQMLQMQEKPDVTYSDIGGMDIQKQEVR 160 EAVELPLVCPELYQQIGIDPPTGVLLYGPPGTGKTMLAKAVANHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENS 240 PAIVFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 320 RQRRLIFQTITAKMNLSEEVDLEEYVSRPEKISAADIAAISQEAGMQAVRKNRYVILPKDFEKGWKIHVKKSDRDFDFYS 400 V 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...P............................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Chro.40284 20 GNTDCEK|YL 0.070 . Chro.40284 27 YLYGSLK|EL 0.086 . Chro.40284 31 SLKELEK|EL 0.058 . Chro.40284 44 IQEDYIK|DE 0.071 . Chro.40284 48 YIKDEQK|GL 0.069 . Chro.40284 51 DEQKGLK|RE 0.057 . Chro.40284 52 EQKGLKR|EF 0.125 . Chro.40284 56 LKREFQR|AK 0.132 . Chro.40284 58 REFQRAK|EE 0.068 . Chro.40284 62 RAKEEIK|RI 0.063 . Chro.40284 63 AKEEIKR|IQ 0.147 . Chro.40284 81 LEMIDSR|YG 0.084 . Chro.40284 96 GSNYYVR|VL 0.118 . Chro.40284 103 VLSTINR|ED 0.080 . Chro.40284 107 INREDLK|PP 0.060 . Chro.40284 116 ASVALHR|HS 0.126 . Chro.40284 141 MLQMQEK|PD 0.064 . Chro.40284 156 GGMDIQK|QE 0.057 . Chro.40284 160 IQKQEVR|EA 0.082 . Chro.40284 194 GPPGTGK|TM 0.058 . Chro.40284 199 GKTMLAK|AV 0.084 . Chro.40284 211 TTATFIR|VV 0.203 . Chro.40284 220 GSEFVQK|YL 0.120 . Chro.40284 227 YLGEGPR|MV 0.154 . Chro.40284 230 EGPRMVR|DV 0.294 . Chro.40284 234 MVRDVFR|LA 0.117 . Chro.40284 237 DVFRLAR|EN 0.269 . Chro.40284 255 VDSIATK|RF 0.069 . Chro.40284 256 DSIATKR|FD 0.204 . Chro.40284 265 AQTGADR|EV 0.095 . Chro.40284 269 ADREVQR|IL 0.115 . Chro.40284 288 DQTTNVK|VI 0.057 . Chro.40284 295 VIMATNR|AD 0.076 . Chro.40284 305 LDPALLR|PG 0.069 . Chro.40284 308 ALLRPGR|LD 0.217 . Chro.40284 311 RPGRLDR|KI 0.309 . Chro.40284 312 PGRLDRK|IE 0.069 . Chro.40284 320 EFPLPDR|RQ 0.064 . Chro.40284 321 FPLPDRR|QR 0.104 . Chro.40284 323 LPDRRQR|RL 0.251 . Chro.40284 324 PDRRQRR|LI 0.591 *ProP* Chro.40284 333 FQTITAK|MN 0.062 . Chro.40284 348 LEEYVSR|PE 0.083 . Chro.40284 351 YVSRPEK|IS 0.135 . Chro.40284 370 AGMQAVR|KN 0.073 . Chro.40284 371 GMQAVRK|NR 0.093 . Chro.40284 373 QAVRKNR|YV 0.339 . Chro.40284 379 RYVILPK|DF 0.083 . Chro.40284 383 LPKDFEK|GW 0.073 . Chro.40284 386 DFEKGWK|IH 0.053 . Chro.40284 390 GWKIHVK|KS 0.078 . Chro.40284 391 WKIHVKK|SD 0.184 . Chro.40284 394 HVKKSDR|DF 0.108 . ____________________________^_________________

  • Fasta :-

    >Chro.40284 ATGGCATGTTCTCTGGGCGAGTCGCAAACAATTATGTCTGGCAATACAGACTGTGAAAAA TATCTGTATGGAAGCCTTAAGGAGCTTGAGAAAGAACTCAACTTTTTGAGTATTCAAGAA GATTATATCAAAGATGAACAAAAAGGTTTGAAACGTGAATTCCAGCGTGCGAAGGAGGAA ATCAAACGTATTCAATCAGTTCCGCTCGTTATTGGGCAATTCCTTGAAATGATAGATTCC AGATACGGAATTGTTTCTTCTACAGCAGGCTCAAATTATTATGTTAGGGTTCTTAGTACA ATCAATAGAGAAGATCTTAAACCACCTGCGTCAGTCGCGCTTCATAGGCACAGTCATGCA ATAGTTGATATTCTTCCTCCTGAAGCAGATTCTAGTATTCAAATGCTTCAAATGCAGGAA AAACCTGACGTAACATATTCTGATATTGGAGGGATGGATATTCAAAAGCAAGAAGTACGA GAAGCCGTTGAGTTGCCGCTTGTGTGTCCAGAATTGTATCAACAAATAGGAATTGATCCT CCAACTGGAGTGCTTCTATATGGACCTCCTGGAACTGGTAAAACTATGCTTGCTAAAGCT GTTGCTAATCACACAACAGCCACGTTTATTAGAGTCGTTGGGTCGGAGTTTGTACAAAAA TATTTGGGTGAAGGCCCAAGGATGGTCCGCGACGTATTTCGTTTGGCAAGAGAAAACTCC CCAGCAATAGTGTTTATTGATGAAGTAGATTCAATTGCAACTAAACGTTTTGATGCACAA ACTGGGGCAGATAGGGAAGTTCAACGTATTTTGCTCGAGCTTTTAAACCAAATGGATGGA TTTGACCAAACAACGAATGTAAAAGTAATTATGGCGACTAACAGAGCAGATACCCTTGAT CCTGCGCTATTGAGGCCCGGTAGACTTGATCGAAAAATAGAATTTCCATTACCTGATAGA AGACAAAGGAGATTGATATTCCAGACTATTACTGCAAAGATGAACTTGAGTGAAGAAGTT GATCTTGAAGAATATGTCTCCAGACCAGAAAAAATATCTGCAGCTGATATAGCCGCGATC TCTCAAGAGGCTGGTATGCAAGCTGTAAGGAAAAATAGATATGTTATTCTACCTAAGGAT TTTGAAAAGGGATGGAAGATACACGTAAAAAAGAGTGATAGAGATTTTGATTTCTATAGT GTATAG
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  • Fasta :-

    MACSLGESQTIMSGNTDCEKYLYGSLKELEKELNFLSIQEDYIKDEQKGLKREFQRAKEE IKRIQSVPLVIGQFLEMIDSRYGIVSSTAGSNYYVRVLSTINREDLKPPASVALHRHSHA IVDILPPEADSSIQMLQMQEKPDVTYSDIGGMDIQKQEVREAVELPLVCPELYQQIGIDP PTGVLLYGPPGTGKTMLAKAVANHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENS PAIVFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD PALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSEEVDLEEYVSRPEKISAADIAAI SQEAGMQAVRKNRYVILPKDFEKGWKIHVKKSDRDFDFYSV

  • title: ATP binding site
  • coordinates: P189,P190,G191,T192,G193,K194,T195,M196,D247,N294
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.4028425 SYLYGSLKEL0.995unspChro.40284392 SHVKKSDRDF0.998unsp

Chro.40284      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India