Chro.40329 | hypothetical protein

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No Results
No Results

  • Fasta :-

    >Chro.40329 MKDNIDIIKSSTDNSYPDLLITDEVLNLDLINIMDNNGKIISINSKNINYWNEIERKNIT YDNISIIDILSKKNMNQNFDLNQLKKENIFNFPILIQEYNFDNLIIDNCKNFNYLGEIVY SLRSNLSENIFSFSKELFTSFKNNEMNASKHNLRNFIINKLLNNYSSIIIIDGDYFSIED AWEIYYSITLIQLSFREIFIIFSQNNKNIEYKYLAKKIIENGFKAMIELKNFDQIDKFNS INIPIFIDXKLGGFNRLLNNDXSLF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/414 Sequence name : 414 Sequence length : 265 VALUES OF COMPUTED PARAMETERS Coef20 : 3.371 CoefTot : -0.113 ChDiff : -7 ZoneTo : 2 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.624 1.406 -0.004 0.504 MesoH : -0.967 0.201 -0.529 0.214 MuHd_075 : 26.915 9.288 6.507 2.963 MuHd_095 : 37.082 18.076 9.737 5.700 MuHd_100 : 34.545 17.932 8.571 5.147 MuHd_105 : 28.799 15.386 6.610 4.365 Hmax_075 : -1.050 0.583 -1.812 0.730 Hmax_095 : 5.900 4.600 -0.498 2.690 Hmax_100 : 7.200 5.100 -0.231 2.690 Hmax_105 : -6.200 1.600 -3.884 0.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9104 0.0896 DFMC : 0.8837 0.1163
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 265 Chro.40329 MKDNIDIIKSSTDNSYPDLLITDEVLNLDLINIMDNNGKIISINSKNINYWNEIERKNITYDNISIIDILSKKNMNQNFD 80 LNQLKKENIFNFPILIQEYNFDNLIIDNCKNFNYLGEIVYSLRSNLSENIFSFSKELFTSFKNNEMNASKHNLRNFIINK 160 LLNNYSSIIIIDGDYFSIEDAWEIYYSITLIQLSFREIFIIFSQNNKNIEYKYLAKKIIENGFKAMIELKNFDQIDKFNS 240 INIPIFIDXKLGGFNRLLNNDXSLF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40329 2 -----MK|DN 0.092 . Chro.40329 9 DNIDIIK|SS 0.070 . Chro.40329 39 IMDNNGK|II 0.067 . Chro.40329 46 IISINSK|NI 0.069 . Chro.40329 56 YWNEIER|KN 0.088 . Chro.40329 57 WNEIERK|NI 0.081 . Chro.40329 72 IIDILSK|KN 0.060 . Chro.40329 73 IDILSKK|NM 0.093 . Chro.40329 85 FDLNQLK|KE 0.055 . Chro.40329 86 DLNQLKK|EN 0.103 . Chro.40329 110 LIIDNCK|NF 0.059 . Chro.40329 123 EIVYSLR|SN 0.088 . Chro.40329 135 NIFSFSK|EL 0.064 . Chro.40329 142 ELFTSFK|NN 0.062 . Chro.40329 150 NEMNASK|HN 0.059 . Chro.40329 154 ASKHNLR|NF 0.076 . Chro.40329 160 RNFIINK|LL 0.059 . Chro.40329 196 LIQLSFR|EI 0.114 . Chro.40329 207 IFSQNNK|NI 0.066 . Chro.40329 212 NKNIEYK|YL 0.085 . Chro.40329 216 EYKYLAK|KI 0.065 . Chro.40329 217 YKYLAKK|II 0.150 . Chro.40329 224 IIENGFK|AM 0.058 . Chro.40329 230 KAMIELK|NF 0.068 . Chro.40329 237 NFDQIDK|FN 0.069 . Chro.40329 250 PIFIDXK|LG 0.057 . Chro.40329 256 KLGGFNR|LL 0.085 . ____________________________^_________________

  • Fasta :-

    >Chro.40329 ATGAAAGATAATATTGATATTATCAAATCTTCAACAGACAACTCTTATCCAGATTTATTG ATTACTGATGAAGTTTTAAATTTAGACCTAATAAATATAATGGATAATAATGGAAAAATT ATATCAATTAATTCAAAAAATATAAATTATTGGAATGAAATTGAAAGAAAAAATATTACA TACGACAATATTTCCATCATTGACATACTTAGTAAAAAGAATATGAATCAAAATTTCGAT TTAAATCAATTAAAAAAAGAAAATATTTTCAATTTTCCGATTTTAATTCAAGAATATAAT TTTGATAATTTAATTATAGATAACTGTAAAAACTTTAATTATTTGGGTGAAATCGTATAT TCATTAAGATCTAATTTATCAGAAAATATATTTTCTTTCAGCAAGGAATTATTCACTTCA TTTAAAAACAATGAAATGAATGCGTCAAAACATAATTTACGTAATTTTATTATCAACAAA TTATTAAACAATTATTCTAGTATTATAATAATTGATGGAGATTATTTTTCAATAGAAGAT GCTTGGGAAATTTATTATTCAATTACATTAATTCAACTTAGCTTCAGGGAAATCTTTATC ATATTTTCCCAAAATAATAAAAATATAGAATACAAATATTTAGCAAAGAAAATTATAGAA AACGGATTCAAAGCAATGATTGAATTAAAAAATTTCGATCAAATAGACAAATTTAATTCA ATAAACATTCCTATCTTCATAGACTNTAAATTGGGAGGTTTTAATAGGTTATTGAATAAT GATCNTAGTTTGTTCTAA
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  • Fasta :-

    No Results
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No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.4032915 SSTDNSYPDL0.991unspChro.40329177 SGDYFSIEDA0.991unsp

Chro.40329      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India