Chro.40469 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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  • Curated_GO_Function_IDs:        

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  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.40469OTHER0.9997430.0002380.000020
No Results

  • Fasta :-

    >Chro.40469 MNGHIPKKKAVIIGINYVETEGISLRGCANDAKLMALTLMSHFDFNASDIIFLTDSEPDR GYDTLVDSQEPISFYDNWPRDEIPPTKHHDSRIYPNKRNILTAINWLTRDAEAGDILVFY FAGHGVQVDVLTSYEGEGYDEALLPADSTLYLASNGSDLDEYNVLLCSELKELLLCVPPE TQLNVILDCNGGQTILDPAGNLNGMWYIKGIVTKGIWPFLSATNKVKRAQYNSSVFKEEQ MVHRLVRPRYVPCVQIGNTQNLKDPSLQSTQYVSLSCKGYCFSAAPWSQIAAEASLPLLS VTRKTQVTDSSMGLSNGPISTPNSQSFNSSGLLSSKTESKLGVIEIPISRGGAYNIIHGV FTWSFCKAISDIATGILQQGRPRNELSYKTILARVREYISCLKTSILAHLDQNPELTIHS GGAGTVSEYFCSPFGGDKSIDFDFDHYFRITDNCIRHLRKNQNFLIPQEAYNSMLQANKN DNLVFHSVNLSILSKPINSSENQVSQRDSPPTFRENNDQEGENKKDESNQLEDRKTVDTX
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/581 Sequence name : 581 Sequence length : 540 VALUES OF COMPUTED PARAMETERS Coef20 : 3.238 CoefTot : -1.615 ChDiff : -14 ZoneTo : 18 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.841 1.371 0.043 0.591 MesoH : -0.090 0.350 -0.271 0.271 MuHd_075 : 18.608 11.292 5.542 3.256 MuHd_095 : 7.788 3.416 3.543 1.449 MuHd_100 : 7.197 9.702 2.372 1.565 MuHd_105 : 8.245 13.277 1.524 2.329 Hmax_075 : 15.867 17.850 3.051 6.160 Hmax_095 : 3.150 10.000 0.004 3.680 Hmax_100 : 3.500 12.500 -1.267 4.040 Hmax_105 : 0.000 4.100 -1.665 2.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9871 0.0129 DFMC : 0.9833 0.0167
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 540 Chro.40469 MNGHIPKKKAVIIGINYVETEGISLRGCANDAKLMALTLMSHFDFNASDIIFLTDSEPDRGYDTLVDSQEPISFYDNWPR 80 DEIPPTKHHDSRIYPNKRNILTAINWLTRDAEAGDILVFYFAGHGVQVDVLTSYEGEGYDEALLPADSTLYLASNGSDLD 160 EYNVLLCSELKELLLCVPPETQLNVILDCNGGQTILDPAGNLNGMWYIKGIVTKGIWPFLSATNKVKRAQYNSSVFKEEQ 240 MVHRLVRPRYVPCVQIGNTQNLKDPSLQSTQYVSLSCKGYCFSAAPWSQIAAEASLPLLSVTRKTQVTDSSMGLSNGPIS 320 TPNSQSFNSSGLLSSKTESKLGVIEIPISRGGAYNIIHGVFTWSFCKAISDIATGILQQGRPRNELSYKTILARVREYIS 400 CLKTSILAHLDQNPELTIHSGGAGTVSEYFCSPFGGDKSIDFDFDHYFRITDNCIRHLRKNQNFLIPQEAYNSMLQANKN 480 DNLVFHSVNLSILSKPINSSENQVSQRDSPPTFRENNDQEGENKKDESNQLEDRKTVDTX 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40469 7 MNGHIPK|KK 0.068 . Chro.40469 8 NGHIPKK|KA 0.121 . Chro.40469 9 GHIPKKK|AV 0.259 . Chro.40469 26 TEGISLR|GC 0.085 . Chro.40469 33 GCANDAK|LM 0.062 . Chro.40469 60 TDSEPDR|GY 0.139 . Chro.40469 80 FYDNWPR|DE 0.091 . Chro.40469 87 DEIPPTK|HH 0.059 . Chro.40469 92 TKHHDSR|IY 0.125 . Chro.40469 97 SRIYPNK|RN 0.064 . Chro.40469 98 RIYPNKR|NI 0.206 . Chro.40469 109 AINWLTR|DA 0.169 . Chro.40469 171 LLCSELK|EL 0.056 . Chro.40469 209 NGMWYIK|GI 0.072 . Chro.40469 214 IKGIVTK|GI 0.094 . Chro.40469 225 FLSATNK|VK 0.072 . Chro.40469 227 SATNKVK|RA 0.065 . Chro.40469 228 ATNKVKR|AQ 0.181 . Chro.40469 237 YNSSVFK|EE 0.071 . Chro.40469 244 EEQMVHR|LV 0.110 . Chro.40469 247 MVHRLVR|PR 0.193 . Chro.40469 249 HRLVRPR|YV 0.185 . Chro.40469 263 GNTQNLK|DP 0.064 . Chro.40469 278 YVSLSCK|GY 0.069 . Chro.40469 303 PLLSVTR|KT 0.078 . Chro.40469 304 LLSVTRK|TQ 0.084 . Chro.40469 336 SGLLSSK|TE 0.062 . Chro.40469 340 SSKTESK|LG 0.061 . Chro.40469 350 IEIPISR|GG 0.072 . Chro.40469 367 FTWSFCK|AI 0.075 . Chro.40469 381 GILQQGR|PR 0.067 . Chro.40469 383 LQQGRPR|NE 0.073 . Chro.40469 389 RNELSYK|TI 0.070 . Chro.40469 394 YKTILAR|VR 0.074 . Chro.40469 396 TILARVR|EY 0.095 . Chro.40469 403 EYISCLK|TS 0.052 . Chro.40469 438 SPFGGDK|SI 0.086 . Chro.40469 449 DFDHYFR|IT 0.092 . Chro.40469 456 ITDNCIR|HL 0.088 . Chro.40469 459 NCIRHLR|KN 0.161 . Chro.40469 460 CIRHLRK|NQ 0.085 . Chro.40469 479 SMLQANK|ND 0.060 . Chro.40469 495 NLSILSK|PI 0.084 . Chro.40469 507 ENQVSQR|DS 0.128 . Chro.40469 514 DSPPTFR|EN 0.103 . Chro.40469 524 DQEGENK|KD 0.060 . Chro.40469 525 QEGENKK|DE 0.139 . Chro.40469 534 SNQLEDR|KT 0.085 . Chro.40469 535 NQLEDRK|TV 0.104 . ____________________________^_________________

  • Fasta :-

    >Chro.40469 ATGAATGGGCATATCCCTAAGAAAAAAGCAGTCATTATTGGAATTAATTATGTGGAAACA GAAGGAATTAGTTTAAGAGGTTGTGCAAATGATGCAAAGTTAATGGCTTTGACATTAATG TCTCACTTTGATTTCAATGCATCAGATATAATCTTTCTAACTGATAGTGAACCAGATAGA GGTTATGATACTTTGGTGGATTCTCAAGAACCAATTTCATTCTATGATAACTGGCCAAGA GATGAAATTCCACCAACAAAACATCATGATTCCAGAATATATCCAAATAAAAGAAATATT TTAACAGCAATAAATTGGTTAACTAGAGATGCAGAAGCTGGTGATATTCTTGTATTTTAT TTTGCAGGACATGGAGTACAAGTAGATGTTTTAACATCATATGAAGGAGAAGGATATGAT GAAGCACTACTTCCAGCAGATTCTACATTATATTTAGCTTCAAATGGTTCAGATTTAGAT GAATATAATGTATTACTTTGCAGTGAACTTAAGGAATTATTATTATGTGTTCCTCCTGAA ACTCAATTGAATGTAATTTTAGATTGTAATGGAGGTCAGACTATTTTAGATCCAGCTGGT AATTTGAATGGTATGTGGTATATTAAAGGTATAGTGACAAAAGGAATTTGGCCATTTCTT TCAGCTACTAATAAAGTTAAAAGAGCACAATATAATTCATCAGTATTTAAAGAAGAACAA ATGGTTCATAGACTTGTAAGACCAAGATATGTTCCTTGTGTTCAAATTGGCAATACACAA AACTTAAAAGATCCAAGTCTTCAATCTACACAATATGTATCTTTATCATGTAAAGGATAT TGTTTTTCTGCTGCTCCATGGAGTCAAATAGCTGCTGAAGCTTCATTACCTTTGTTATCA GTTACTAGAAAGACTCAAGTGACAGATTCTTCAATGGGTTTATCAAATGGCCCAATTTCT ACTCCTAATTCTCAATCATTTAATAGTTCTGGATTACTTTCATCTAAAACAGAATCTAAA TTAGGTGTAATAGAGATTCCAATATCTAGAGGTGGAGCTTATAATATAATTCATGGAGTT TTTACCTGGTCATTTTGTAAAGCTATTAGTGATATTGCTACTGGAATATTACAACAAGGA AGACCAAGGAATGAACTTTCGTATAAGACAATTCTAGCAAGAGTGAGAGAGTACATCTCA TGCCTGAAAACTTCAATTCTTGCTCACTTAGATCAAAATCCAGAATTAACTATTCATTCA GGAGGAGCTGGGACTGTTTCTGAATATTTTTGTTCCCCATTTGGAGGAGACAAAAGTATA GATTTTGATTTTGATCATTATTTTAGAATAACTGATAATTGTATAAGACATTTAAGAAAG AACCAGAACTTTTTAATACCTCAAGAAGCTTACAATTCTATGTTACAAGCCAACAAGAAT GATAATTTAGTTTTCCATTCTGTGAATTTAAGTATATTAAGTAAGCCCATTAATTCATCT GAAAACCAGGTTTCACAAAGAGATTCCCCTCCAACATTTAGAGAAAACAATGATCAGGAA GGTGAGAATAAGAAAGATGAATCCAATCAATTAGAAGATAGGAAAACAGTGGATACTAGN TAG
  • Download Fasta

  • Fasta :-

    MNGHIPKKKAVIIGINYVETEGISLRGCANDAKLMALTLMSHFDFNASDIIFLTDSEPDR GYDTLVDSQEPISFYDNWPRDEIPPTKHHDSRIYPNKRNILTAINWLTRDAEAGDILVFY FAGHGVQVDVLTSYEGEGYDEALLPADSTLYLASNGSDLDEYNVLLCSELKELLLCVPPE TQLNVILDCNGGQTILDPAGNLNGMWYIKGIVTKGIWPFLSATNKVKRAQYNSSVFKEEQ MVHRLVRPRYVPCVQIGNTQNLKDPSLQSTQYVSLSCKGYCFSAAPWSQIAAEASLPLLS VTRKTQVTDSSMGLSNGPISTPNSQSFNSSGLLSSKTESKLGVIEIPISRGGAYNIIHGV FTWSFCKAISDIATGILQQGRPRNELSYKTILARVREYISCLKTSILAHLDQNPELTIHS GGAGTVSEYFCSPFGGDKSIDFDFDHYFRITDNCIRHLRKNQNFLIPQEAYNSMLQANKN DNLVFHSVNLSILSKPINSSENQVSQRDSPPTFRENNDQEGENKKDESNQLEDRKTVDTX

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.4046973 SQEPISFYDN0.992unspChro.40469505 SENQVSQRDS0.997unsp

Chro.40469      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India