Chro.40501 | hypothetical protein

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No Results
No Results

  • Fasta :-

    >Chro.40501 MDSDSQESKPSRRKVLQRQNQEVKALKEEWKKALASCNKKGSKKGLDKEYQSKMEALQLS HKMELMKLSGESNLENEEDSVGQSSENNRNIDDSNTNKLSLVEKLQTMDEVPSLYSNATF QVTKSEKRKKKKQKELEQKYMKSLEECALNSKFI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/746 Sequence name : 746 Sequence length : 154 VALUES OF COMPUTED PARAMETERS Coef20 : 3.788 CoefTot : 0.000 ChDiff : 5 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : -0.335 0.141 -0.410 0.146 MesoH : -2.187 -0.869 -0.919 -0.148 MuHd_075 : 43.982 20.591 9.587 9.288 MuHd_095 : 23.931 17.569 7.918 4.980 MuHd_100 : 17.961 15.656 6.105 3.618 MuHd_105 : 7.151 9.984 3.259 1.273 Hmax_075 : 3.383 -0.700 -1.920 0.758 Hmax_095 : -11.500 0.300 -3.810 -0.920 Hmax_100 : -11.100 0.300 -3.810 -0.920 Hmax_105 : -20.183 -5.483 -6.942 -3.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7383 0.2617 DFMC : 0.6954 0.3046
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 154 Chro.40501 MDSDSQESKPSRRKVLQRQNQEVKALKEEWKKALASCNKKGSKKGLDKEYQSKMEALQLSHKMELMKLSGESNLENEEDS 80 VGQSSENNRNIDDSNTNKLSLVEKLQTMDEVPSLYSNATFQVTKSEKRKKKKQKELEQKYMKSLEECALNSKFI 160 ................................................................................ 80 .......................................................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40501 9 SDSQESK|PS 0.074 . Chro.40501 12 QESKPSR|RK 0.088 . Chro.40501 13 ESKPSRR|KV 0.238 . Chro.40501 14 SKPSRRK|VL 0.079 . Chro.40501 18 RRKVLQR|QN 0.124 . Chro.40501 24 RQNQEVK|AL 0.067 . Chro.40501 27 QEVKALK|EE 0.058 . Chro.40501 31 ALKEEWK|KA 0.067 . Chro.40501 32 LKEEWKK|AL 0.093 . Chro.40501 39 ALASCNK|KG 0.065 . Chro.40501 40 LASCNKK|GS 0.178 . Chro.40501 43 CNKKGSK|KG 0.064 . Chro.40501 44 NKKGSKK|GL 0.179 . Chro.40501 48 SKKGLDK|EY 0.065 . Chro.40501 53 DKEYQSK|ME 0.064 . Chro.40501 62 ALQLSHK|ME 0.062 . Chro.40501 67 HKMELMK|LS 0.071 . Chro.40501 89 QSSENNR|NI 0.151 . Chro.40501 98 DDSNTNK|LS 0.062 . Chro.40501 104 KLSLVEK|LQ 0.067 . Chro.40501 124 ATFQVTK|SE 0.070 . Chro.40501 127 QVTKSEK|RK 0.060 . Chro.40501 128 VTKSEKR|KK 0.147 . Chro.40501 129 TKSEKRK|KK 0.158 . Chro.40501 130 KSEKRKK|KK 0.143 . Chro.40501 131 SEKRKKK|KQ 0.347 . Chro.40501 132 EKRKKKK|QK 0.175 . Chro.40501 134 RKKKKQK|EL 0.114 . Chro.40501 139 QKELEQK|YM 0.066 . Chro.40501 142 LEQKYMK|SL 0.087 . Chro.40501 152 ECALNSK|FI 0.065 . ____________________________^_________________

  • Fasta :-

    >Chro.40501 ATGGACTCAGACTCTCAGGAAAGTAAGCCAAGCAGAAGAAAGGTTCTACAGAGGCAAAAT CAGGAAGTTAAGGCTTTAAAAGAGGAATGGAAGAAAGCCCTTGCTAGCTGTAATAAGAAG GGATCTAAAAAGGGGCTTGATAAAGAATACCAATCAAAGATGGAGGCACTACAACTATCT CATAAGATGGAACTAATGAAACTATCTGGTGAAAGCAATTTAGAAAATGAAGAAGACTCT GTGGGGCAATCTTCTGAAAATAATAGGAATATTGACGACTCCAATACAAATAAACTCAGT TTAGTGGAAAAACTTCAAACTATGGATGAAGTACCATCATTATATTCCAATGCAACCTTT CAAGTGACTAAGAGTGAAAAGCGAAAAAAGAAAAAGCAAAAAGAACTTGAACAGAAATAT ATGAAAAGTCTGGAAGAATGTGCACTAAATAGTAAGTTTATTTGA
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  • Fasta :-

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.40501125 SQVTKSEKRK0.996unspChro.40501125 SQVTKSEKRK0.996unspChro.40501125 SQVTKSEKRK0.996unspChro.4050142 SNKKGSKKGL0.991unspChro.4050184 SSVGQSSENN0.991unsp

Chro.40501      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India