Chro.50050 | beta tubulin

_IDPredictionOTHERSPmTPCS_Position
Chro.50050OTHER0.9997870.0000990.000113
No Results

  • Fasta :-

    >Chro.50050 MEESKKNSSRVIVNSGSAVGIKYKDGIMLISSPLLCYGSMKMNSDISRFHVIGSGMIDLY DERQKLKSKDEDMSSVNTDKRPLVRKLTEVDEDAKVRFYEGKLSVIVSTGEFSDFQNIIE RVEEKAAEDFFEGNFKSAKEYSGYISAVHYQRRNKMDPLLNDIIVAGLRKDGSKEIYSVD PLGTRFDEDFIASGMAEYLAITLLRDKYKPDMSFDEAKLILEDCMKNSFYIECKGARMVQ IATINQDGTRIYPKYPLDVTWRHDLFVKSNLDRKDYVGF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/239 Sequence name : 239 Sequence length : 279 VALUES OF COMPUTED PARAMETERS Coef20 : 3.883 CoefTot : 0.000 ChDiff : -4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.229 1.094 0.127 0.466 MesoH : -1.386 -0.061 -0.568 0.061 MuHd_075 : 16.156 9.219 4.747 4.931 MuHd_095 : 39.319 17.317 10.618 6.469 MuHd_100 : 35.388 16.139 8.944 5.864 MuHd_105 : 27.167 12.588 6.145 4.528 Hmax_075 : 1.400 4.600 -0.840 1.840 Hmax_095 : 11.900 7.800 1.631 3.080 Hmax_100 : 12.500 10.000 1.738 3.220 Hmax_105 : -0.175 0.117 -2.808 0.653 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7669 0.2331 DFMC : 0.6929 0.3071
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 279 Chro.50050 MEESKKNSSRVIVNSGSAVGIKYKDGIMLISSPLLCYGSMKMNSDISRFHVIGSGMIDLYDERQKLKSKDEDMSSVNTDK 80 RPLVRKLTEVDEDAKVRFYEGKLSVIVSTGEFSDFQNIIERVEEKAAEDFFEGNFKSAKEYSGYISAVHYQRRNKMDPLL 160 NDIIVAGLRKDGSKEIYSVDPLGTRFDEDFIASGMAEYLAITLLRDKYKPDMSFDEAKLILEDCMKNSFYIECKGARMVQ 240 IATINQDGTRIYPKYPLDVTWRHDLFVKSNLDRKDYVGF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50050 5 --MEESK|KN 0.058 . Chro.50050 6 -MEESKK|NS 0.110 . Chro.50050 10 SKKNSSR|VI 0.117 . Chro.50050 22 GSAVGIK|YK 0.081 . Chro.50050 24 AVGIKYK|DG 0.071 . Chro.50050 41 LCYGSMK|MN 0.079 . Chro.50050 48 MNSDISR|FH 0.126 . Chro.50050 63 IDLYDER|QK 0.069 . Chro.50050 65 LYDERQK|LK 0.070 . Chro.50050 67 DERQKLK|SK 0.087 . Chro.50050 69 RQKLKSK|DE 0.071 . Chro.50050 80 SSVNTDK|RP 0.057 . Chro.50050 81 SVNTDKR|PL 0.199 . Chro.50050 85 DKRPLVR|KL 0.096 . Chro.50050 86 KRPLVRK|LT 0.110 . Chro.50050 95 EVDEDAK|VR 0.056 . Chro.50050 97 DEDAKVR|FY 0.135 . Chro.50050 102 VRFYEGK|LS 0.070 . Chro.50050 121 FQNIIER|VE 0.090 . Chro.50050 125 IERVEEK|AA 0.088 . Chro.50050 136 FFEGNFK|SA 0.075 . Chro.50050 139 GNFKSAK|EY 0.083 . Chro.50050 152 SAVHYQR|RN 0.069 . Chro.50050 153 AVHYQRR|NK 0.153 . Chro.50050 155 HYQRRNK|MD 0.097 . Chro.50050 169 IIVAGLR|KD 0.081 . Chro.50050 170 IVAGLRK|DG 0.105 . Chro.50050 174 LRKDGSK|EI 0.072 . Chro.50050 185 VDPLGTR|FD 0.086 . Chro.50050 205 LAITLLR|DK 0.110 . Chro.50050 207 ITLLRDK|YK 0.056 . Chro.50050 209 LLRDKYK|PD 0.072 . Chro.50050 218 MSFDEAK|LI 0.063 . Chro.50050 226 ILEDCMK|NS 0.064 . Chro.50050 234 SFYIECK|GA 0.081 . Chro.50050 237 IECKGAR|MV 0.138 . Chro.50050 250 INQDGTR|IY 0.088 . Chro.50050 254 GTRIYPK|YP 0.072 . Chro.50050 262 PLDVTWR|HD 0.076 . Chro.50050 268 RHDLFVK|SN 0.071 . Chro.50050 273 VKSNLDR|KD 0.103 . Chro.50050 274 KSNLDRK|DY 0.094 . ____________________________^_________________

  • Fasta :-

    >Chro.50050 ATGGAAGAAAGTAAAAAGAATTCGTCTAGAGTCATAGTAAACTCTGGTTCAGCTGTAGGA ATCAAGTATAAAGATGGCATTATGTTAATTTCAAGCCCTTTATTATGTTATGGATCAATG AAGATGAATTCTGATATTTCAAGGTTCCATGTAATTGGATCAGGAATGATTGATTTATAT GATGAAAGACAAAAACTTAAAAGCAAAGATGAGGATATGAGTTCCGTTAATACTGATAAA AGACCATTGGTCAGAAAATTGACAGAAGTAGATGAAGATGCAAAAGTAAGATTTTATGAA GGAAAGCTTTCAGTAATAGTATCAACTGGGGAATTTAGTGATTTTCAAAACATTATTGAG AGAGTTGAAGAAAAAGCAGCTGAAGACTTTTTTGAAGGGAATTTCAAATCTGCCAAGGAG TATAGTGGATATATTTCAGCAGTTCACTATCAAAGAAGAAATAAGATGGATCCTTTATTG AATGATATAATAGTTGCAGGACTGCGAAAAGATGGAAGTAAAGAAATTTATTCAGTGGAT CCATTAGGTACTAGATTTGATGAAGACTTTATTGCTAGTGGAATGGCTGAGTATCTTGCA ATTACATTACTTAGAGATAAATATAAGCCAGATATGAGCTTTGATGAAGCAAAATTGATC TTGGAAGATTGCATGAAAAACTCATTTTATATTGAATGCAAAGGAGCTAGAATGGTTCAG ATTGCCACAATTAATCAAGATGGTACCAGAATTTACCCAAAGTATCCTCTTGATGTTACT TGGAGGCATGATCTTTTTGTCAAATCCAACTTGGATAGAAAGGACTATGTTGGATTCTAA
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  • Fasta :-

    MEESKKNSSRVIVNSGSAVGIKYKDGIMLISSPLLCYGSMKMNSDISRFHVIGSGMIDLY DERQKLKSKDEDMSSVNTDKRPLVRKLTEVDEDAKVRFYEGKLSVIVSTGEFSDFQNIIE RVEEKAAEDFFEGNFKSAKEYSGYISAVHYQRRNKMDPLLNDIIVAGLRKDGSKEIYSVD PLGTRFDEDFIASGMAEYLAITLLRDKYKPDMSFDEAKLILEDCMKNSFYIECKGARMVQ IATINQDGTRIYPKYPLDVTWRHDLFVKSNLDRKDYVGF

    No Results
  • title: active site
  • coordinates: G16,S32,L34,R48
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.5005068 SQKLKSKDED0.996unspChro.5005074 SDEDMSSVNT0.991unsp

Chro.50050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India