Chro.50200 | proteasome subunit alpha type 5

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.50200	OTHER	0.993357	0.006322	0.000320

No Results

Fasta :-
>Chro.50200 MIIDRHVGCCMSGLVADAKTMIDHARVESQNYFFTYNENIPTQSVVQSISDLALDFSDIK EKGKKKSMSRPFGVAMLIAGADSDGSSSLWMTDPSGTYTQYSAAAIGTAQEGAETILLEN YNSNMSLKEAEDLALIVLRQVMEEKINSVNVEVAAVKEKKFIIYDNKEIQRVLDRLPPPT HIVPSQLS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/143 Sequence name : 143 Sequence length : 188 VALUES OF COMPUTED PARAMETERS Coef20 : 4.015 CoefTot : 0.000 ChDiff : -7 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.482 0.953 0.005 0.384 MesoH : -0.485 0.094 -0.385 0.192 MuHd_075 : 13.082 5.627 0.569 3.591 MuHd_095 : 21.785 18.325 4.943 5.941 MuHd_100 : 10.432 11.153 2.380 4.015 MuHd_105 : 1.371 3.547 1.984 1.911 Hmax_075 : 5.200 12.600 2.733 4.080 Hmax_095 : 18.100 22.900 5.245 6.250 Hmax_100 : 6.900 16.900 2.221 5.060 Hmax_105 : 9.800 12.950 3.792 4.422 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8122 0.1878 DFMC : 0.9514 0.0486

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 188 Chro.50200 MIIDRHVGCCMSGLVADAKTMIDHARVESQNYFFTYNENIPTQSVVQSISDLALDFSDIKEKGKKKSMSRPFGVAMLIAG 80 ADSDGSSSLWMTDPSGTYTQYSAAAIGTAQEGAETILLENYNSNMSLKEAEDLALIVLRQVMEEKINSVNVEVAAVKEKK 160 FIIYDNKEIQRVLDRLPPPTHIVPSQLS 240 ................................................................................ 80 ................................................................................ 160 ............................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50200 5 --MIIDR|HV 0.148 . Chro.50200 19 GLVADAK|TM 0.069 . Chro.50200 26 TMIDHAR|VE 0.129 . Chro.50200 60 LDFSDIK|EK 0.065 . Chro.50200 62 FSDIKEK|GK 0.066 . Chro.50200 64 DIKEKGK|KK 0.070 . Chro.50200 65 IKEKGKK|KS 0.091 . Chro.50200 66 KEKGKKK|SM 0.167 . Chro.50200 70 KKKSMSR|PF 0.106 . Chro.50200 128 NSNMSLK|EA 0.088 . Chro.50200 139 LALIVLR|QV 0.116 . Chro.50200 145 RQVMEEK|IN 0.067 . Chro.50200 157 VEVAAVK|EK 0.057 . Chro.50200 159 VAAVKEK|KF 0.067 . Chro.50200 160 AAVKEKK|FI 0.121 . Chro.50200 167 FIIYDNK|EI 0.068 . Chro.50200 171 DNKEIQR|VL 0.080 . Chro.50200 175 IQRVLDR|LP 0.069 . ____________________________^_________________

Fasta :-
>Chro.50200 ATGATAATTGATAGGCACGTTGGGTGTTGTATGAGCGGACTTGTTGCAGACGCAAAAACG ATGATAGATCATGCTAGGGTGGAATCTCAGAATTATTTTTTCACATATAATGAGAATATT CCAACTCAGTCTGTAGTCCAATCTATCAGCGATTTAGCATTGGATTTCTCCGATATTAAA GAAAAAGGCAAGAAAAAGTCGATGTCTCGCCCTTTTGGAGTAGCAATGTTAATAGCTGGA GCAGATAGCGACGGAAGTTCAAGTTTGTGGATGACGGACCCTTCAGGGACATATACTCAA TATTCGGCAGCAGCTATAGGCACAGCTCAAGAAGGTGCAGAGACCATTCTATTAGAAAAC TACAATTCAAATATGTCATTGAAAGAAGCAGAGGATTTAGCGCTCATTGTTCTTAGACAA GTTATGGAAGAGAAAATCAATTCAGTGAACGTAGAAGTTGCTGCTGTTAAAGAAAAAAAA TTCATTATTTATGACAACAAAGAGATCCAAAGAGTTTTAGACCGTCTTCCTCCACCTACA CACATTGTGCCTTCTCAACTTTCATAA
Download Fasta

Fasta :-

MIIDRHVGCCMSGLVADAKTMIDHARVESQNYFFTYNENIPTQSVVQSISDLALDFSDIK EKGKKKSMSRPFGVAMLIAGADSDGSSSLWMTDPSGTYTQYSAAAIGTAQEGAETILLEN YNSNMSLKEAEDLALIVLRQVMEEKINSVNVEVAAVKEKKFIIYDNKEIQRVLDRLPPPT HIVPSQLS

Proteasome subunits

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.50200	S	188	0.576	0.029	Chro.50200	S	185	0.523	0.237	Chro.50200	T	92	0.504	0.110	Chro.50200	T	99	0.500	0.045

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.50200	S	188	0.576	0.029	Chro.50200	S	185	0.523	0.237	Chro.50200	T	92	0.504	0.110	Chro.50200	T	99	0.500	0.045

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	Chro.50200	67 S	GKKKSMSRP	0.992	unsp	Chro.50200	126 S	NSNMSLKEA	0.997	unsp

Chro.50200 | proteasome subunit alpha type 5

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.50200

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India