Chro.50269 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.50269OTHER0.9997290.0001140.000157
No Results

  • Fasta :-

    >Chro.50269 MPVINCSSTRLRTDLIDYIWTIEDFPLLRTLAMQRALPNHDRIISEKFGDQHNGTWFLTI FPAGVNCDGDMLSIYLFSYSEQIRIAQFEISLLDDKLNIIEGTTVSLSQPRVFNVHDSSW GWEDYMRINIIDDTSLNDESIKNSPSQAIPSPFENNQGRTLSPDELIYFSDEGLDTYSVQ NHSLGGSSEIKSSEDNILNWERTVLKYFIFGGAIRVKINIKSFKDFIHSDGSVIVPNFLS NRIATQDYLWLANDISRLSKECSDKLCEKVTLNCGTELFHVPKFALAARSKYFQNFFLSN FSDSNAKYFSIPVGDASPYILRNALDYILTGDCRLLSDENIKNWKEIIDLFRFSDKYGIK SLYNACVPAIIANINSESVWATMIIAKQCNSDKILKSVEHFFKTSGDFSLIVNALVGHIL EYKNSIVKG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/748 Sequence name : 748 Sequence length : 429 VALUES OF COMPUTED PARAMETERS Coef20 : 4.439 CoefTot : 0.229 ChDiff : -12 ZoneTo : 13 KR : 2 DE : 0 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.753 1.194 0.004 0.512 MesoH : -0.528 0.427 -0.382 0.238 MuHd_075 : 6.256 9.429 2.876 1.234 MuHd_095 : 23.026 18.991 5.553 5.114 MuHd_100 : 19.151 12.357 2.878 4.147 MuHd_105 : 11.992 3.012 1.686 2.382 Hmax_075 : -1.200 4.667 -1.282 1.580 Hmax_095 : 11.800 13.400 2.314 4.600 Hmax_100 : 12.600 11.100 1.729 4.140 Hmax_105 : 11.550 9.567 3.361 3.278 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5089 0.4911 DFMC : 0.6887 0.3113
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 429 Chro.50269 MPVINCSSTRLRTDLIDYIWTIEDFPLLRTLAMQRALPNHDRIISEKFGDQHNGTWFLTIFPAGVNCDGDMLSIYLFSYS 80 EQIRIAQFEISLLDDKLNIIEGTTVSLSQPRVFNVHDSSWGWEDYMRINIIDDTSLNDESIKNSPSQAIPSPFENNQGRT 160 LSPDELIYFSDEGLDTYSVQNHSLGGSSEIKSSEDNILNWERTVLKYFIFGGAIRVKINIKSFKDFIHSDGSVIVPNFLS 240 NRIATQDYLWLANDISRLSKECSDKLCEKVTLNCGTELFHVPKFALAARSKYFQNFFLSNFSDSNAKYFSIPVGDASPYI 320 LRNALDYILTGDCRLLSDENIKNWKEIIDLFRFSDKYGIKSLYNACVPAIIANINSESVWATMIIAKQCNSDKILKSVEH 400 FFKTSGDFSLIVNALVGHILEYKNSIVKG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50269 10 INCSSTR|LR 0.090 . Chro.50269 12 CSSTRLR|TD 0.081 . Chro.50269 29 EDFPLLR|TL 0.072 . Chro.50269 35 RTLAMQR|AL 0.073 . Chro.50269 42 ALPNHDR|II 0.140 . Chro.50269 47 DRIISEK|FG 0.088 . Chro.50269 84 SYSEQIR|IA 0.111 . Chro.50269 96 ISLLDDK|LN 0.059 . Chro.50269 111 VSLSQPR|VF 0.079 . Chro.50269 127 GWEDYMR|IN 0.083 . Chro.50269 142 LNDESIK|NS 0.057 . Chro.50269 159 FENNQGR|TL 0.131 . Chro.50269 191 GGSSEIK|SS 0.103 . Chro.50269 202 NILNWER|TV 0.094 . Chro.50269 206 WERTVLK|YF 0.070 . Chro.50269 215 IFGGAIR|VK 0.070 . Chro.50269 217 GGAIRVK|IN 0.074 . Chro.50269 221 RVKINIK|SF 0.083 . Chro.50269 224 INIKSFK|DF 0.095 . Chro.50269 242 PNFLSNR|IA 0.098 . Chro.50269 257 LANDISR|LS 0.075 . Chro.50269 260 DISRLSK|EC 0.210 . Chro.50269 265 SKECSDK|LC 0.070 . Chro.50269 269 SDKLCEK|VT 0.060 . Chro.50269 283 ELFHVPK|FA 0.082 . Chro.50269 289 KFALAAR|SK 0.141 . Chro.50269 291 ALAARSK|YF 0.066 . Chro.50269 307 FSDSNAK|YF 0.066 . Chro.50269 322 ASPYILR|NA 0.093 . Chro.50269 334 ILTGDCR|LL 0.078 . Chro.50269 342 LSDENIK|NW 0.065 . Chro.50269 345 ENIKNWK|EI 0.068 . Chro.50269 352 EIIDLFR|FS 0.109 . Chro.50269 356 LFRFSDK|YG 0.074 . Chro.50269 360 SDKYGIK|SL 0.075 . Chro.50269 387 ATMIIAK|QC 0.059 . Chro.50269 393 KQCNSDK|IL 0.076 . Chro.50269 396 NSDKILK|SV 0.120 . Chro.50269 403 SVEHFFK|TS 0.069 . Chro.50269 423 GHILEYK|NS 0.062 . Chro.50269 428 YKNSIVK|G- 0.066 . ____________________________^_________________

  • Fasta :-

    >Chro.50269 ATGCCTGTTATTAATTGCAGTTCAACACGTTTGAGAACTGACTTAATAGATTATATTTGG ACGATTGAAGATTTTCCTTTACTAAGAACACTCGCAATGCAGCGTGCATTGCCTAATCAC GACAGAATAATAAGTGAAAAATTTGGTGATCAGCATAATGGAACTTGGTTTCTAACCATA TTTCCTGCAGGAGTAAACTGCGATGGTGATATGCTATCAATTTATTTATTTTCATACTCA GAACAAATCAGGATTGCACAATTTGAAATTTCTTTATTAGATGATAAGTTAAATATCATT GAAGGTACAACAGTCTCGCTTTCTCAACCTCGAGTTTTCAATGTTCATGATTCAAGTTGG GGATGGGAGGATTATATGCGAATTAATATAATCGACGATACTAGTTTAAATGATGAGAGT ATTAAAAATTCTCCAAGTCAAGCAATTCCCTCCCCATTTGAGAATAACCAGGGAAGAACG CTATCACCAGATGAATTAATTTATTTTTCGGATGAAGGCTTAGACACATATAGCGTTCAA AACCATTCATTAGGTGGAAGCAGTGAAATAAAATCTTCTGAAGATAACATTCTGAATTGG GAGAGAACTGTACTTAAATATTTTATTTTTGGTGGTGCAATCCGTGTAAAAATAAATATC AAGTCATTTAAAGATTTTATTCATTCAGATGGGAGCGTAATTGTTCCTAATTTTTTATCA AACAGAATTGCTACTCAAGATTATTTATGGCTTGCAAACGACATTTCCAGACTTTCTAAA GAGTGCTCAGATAAATTATGTGAAAAAGTTACACTAAATTGCGGTACTGAGCTCTTTCAT GTCCCCAAGTTTGCACTTGCTGCTAGATCGAAGTACTTCCAGAATTTTTTTTTATCAAAC TTCTCAGATTCAAATGCTAAGTATTTTTCAATTCCAGTTGGCGATGCATCACCATATATT TTAAGAAATGCATTAGATTATATTTTAACTGGAGATTGCAGATTATTGAGTGATGAAAAC ATTAAAAACTGGAAGGAGATAATAGATTTATTCAGATTTTCAGACAAGTATGGAATTAAA TCGTTATACAATGCATGCGTGCCCGCTATTATTGCAAATATCAATTCAGAATCCGTATGG GCTACTATGATAATTGCAAAACAATGTAATTCAGATAAAATTCTTAAATCAGTGGAACAT TTTTTTAAGACAAGCGGGGATTTTTCTTTAATTGTAAATGCTCTAGTTGGCCACATATTA GAATATAAAAACTCGATAGTTAAAGGCTAA
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  • Fasta :-

    MPVINCSSTRLRTDLIDYIWTIEDFPLLRTLAMQRALPNHDRIISEKFGDQHNGTWFLTI FPAGVNCDGDMLSIYLFSYSEQIRIAQFEISLLDDKLNIIEGTTVSLSQPRVFNVHDSSW GWEDYMRINIIDDTSLNDESIKNSPSQAIPSPFENNQGRTLSPDELIYFSDEGLDTYSVQ NHSLGGSSEIKSSEDNILNWERTVLKYFIFGGAIRVKINIKSFKDFIHSDGSVIVPNFLS NRIATQDYLWLANDISRLSKECSDKLCEKVTLNCGTELFHVPKFALAARSKYFQNFFLSN FSDSNAKYFSIPVGDASPYILRNALDYILTGDCRLLSDENIKNWKEIIDLFRFSDKYGIK SLYNACVPAIIANINSESVWATMIIAKQCNSDKILKSVEHFFKTSGDFSLIVNALVGHIL EYKNSIVKG

  • title: putative substrate binding site
  • coordinates: Y75,S119,W120,G121
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.50269192 SSEIKSSEDN0.997unspChro.50269192 SSEIKSSEDN0.997unspChro.50269192 SSEIKSSEDN0.997unspChro.50269259 SISRLSKECS0.998unspChro.50269337 SCRLLSDENI0.992unspChro.50269354 SLFRFSDKYG0.991unspChro.50269135 SIDDTSLNDE0.99unspChro.50269162 SGRTLSPDEL0.991unsp

Chro.50269      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India