Chro.50310 | hypothetical protein

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  • Fasta :-

    >Chro.50310 MGQDIEMEKKHDSDDEREDSEAFDAAAEDDFDEYDVEQQKVDESRFLQKRFEFEVDYMKK LRVWEASFFIHTSENLENTPQEFFYVIEFGHVNPERNYEGTLKRMMVYTAATLLKPGEVK VLTFPIIVWPKKILYISYSELEMFQISIKLWTIGTFTFNQLLASVKLTLKDVLENDPETH LMFKKHLPAPLGKDGKPRKDFNQKSFEVHRSRVTLQLQEIFDFDISLENWSFIPNKKLPI EIKKAPKFLRLKVPLNNDITSGMSSRSKLKCNKFL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/419 Sequence name : 419 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 2.351 CoefTot : -0.405 ChDiff : -6 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.941 1.300 -0.080 0.546 MesoH : -0.043 0.628 -0.321 0.321 MuHd_075 : 15.961 9.105 2.677 3.492 MuHd_095 : 7.487 8.791 3.530 2.513 MuHd_100 : 11.072 9.568 4.157 4.083 MuHd_105 : 7.054 6.895 2.885 4.129 Hmax_075 : -26.483 -8.983 -9.131 -1.750 Hmax_095 : -25.725 -8.925 -8.174 -2.140 Hmax_100 : -18.100 -5.700 -6.593 -0.800 Hmax_105 : -27.900 -8.400 -8.777 -1.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9967 0.0033 DFMC : 0.9889 0.0111
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 Chro.50310 MGQDIEMEKKHDSDDEREDSEAFDAAAEDDFDEYDVEQQKVDESRFLQKRFEFEVDYMKKLRVWEASFFIHTSENLENTP 80 QEFFYVIEFGHVNPERNYEGTLKRMMVYTAATLLKPGEVKVLTFPIIVWPKKILYISYSELEMFQISIKLWTIGTFTFNQ 160 LLASVKLTLKDVLENDPETHLMFKKHLPAPLGKDGKPRKDFNQKSFEVHRSRVTLQLQEIFDFDISLENWSFIPNKKLPI 240 EIKKAPKFLRLKVPLNNDITSGMSSRSKLKCNKFL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50310 9 QDIEMEK|KH 0.057 . Chro.50310 10 DIEMEKK|HD 0.107 . Chro.50310 17 HDSDDER|ED 0.127 . Chro.50310 40 YDVEQQK|VD 0.057 . Chro.50310 45 QKVDESR|FL 0.119 . Chro.50310 49 ESRFLQK|RF 0.074 . Chro.50310 50 SRFLQKR|FE 0.241 . Chro.50310 59 FEVDYMK|KL 0.062 . Chro.50310 60 EVDYMKK|LR 0.070 . Chro.50310 62 DYMKKLR|VW 0.127 . Chro.50310 96 GHVNPER|NY 0.124 . Chro.50310 103 NYEGTLK|RM 0.056 . Chro.50310 104 YEGTLKR|MM 0.142 . Chro.50310 115 TAATLLK|PG 0.074 . Chro.50310 120 LKPGEVK|VL 0.056 . Chro.50310 131 PIIVWPK|KI 0.060 . Chro.50310 132 IIVWPKK|IL 0.101 . Chro.50310 149 MFQISIK|LW 0.072 . Chro.50310 166 QLLASVK|LT 0.058 . Chro.50310 170 SVKLTLK|DV 0.070 . Chro.50310 184 ETHLMFK|KH 0.059 . Chro.50310 185 THLMFKK|HL 0.102 . Chro.50310 193 LPAPLGK|DG 0.069 . Chro.50310 196 PLGKDGK|PR 0.058 . Chro.50310 198 GKDGKPR|KD 0.113 . Chro.50310 199 KDGKPRK|DF 0.127 . Chro.50310 204 RKDFNQK|SF 0.090 . Chro.50310 210 KSFEVHR|SR 0.126 . Chro.50310 212 FEVHRSR|VT 0.089 . Chro.50310 236 WSFIPNK|KL 0.068 . Chro.50310 237 SFIPNKK|LP 0.086 . Chro.50310 243 KLPIEIK|KA 0.068 . Chro.50310 244 LPIEIKK|AP 0.079 . Chro.50310 247 EIKKAPK|FL 0.068 . Chro.50310 250 KAPKFLR|LK 0.083 . Chro.50310 252 PKFLRLK|VP 0.052 . Chro.50310 266 TSGMSSR|SK 0.148 . Chro.50310 268 GMSSRSK|LK 0.067 . Chro.50310 270 SSRSKLK|CN 0.064 . Chro.50310 273 SKLKCNK|FL 0.071 . ____________________________^_________________

  • Fasta :-

    >Chro.50310 ATGGGGCAGGATATTGAAATGGAAAAAAAACATGACTCAGATGATGAACGCGAAGATTCA GAAGCTTTTGATGCTGCTGCGGAAGACGATTTTGATGAATATGATGTTGAGCAACAAAAA GTTGATGAATCCAGATTTCTGCAAAAACGATTTGAATTTGAGGTTGATTATATGAAGAAA CTTAGAGTATGGGAAGCTTCTTTTTTTATTCATACTAGTGAAAATCTAGAAAACACACCA CAAGAATTCTTCTATGTTATTGAATTTGGGCATGTTAATCCAGAGAGAAACTACGAAGGA ACTTTAAAGAGAATGATGGTTTACACAGCTGCAACTTTATTAAAACCAGGAGAAGTAAAA GTATTAACTTTCCCGATTATCGTTTGGCCAAAAAAGATCTTATATATATCATATTCTGAA TTAGAGATGTTTCAAATATCCATTAAGCTCTGGACAATTGGAACGTTTACTTTCAACCAA CTGCTTGCTTCAGTCAAACTTACACTCAAAGATGTACTGGAAAACGATCCAGAAACCCAT TTAATGTTTAAAAAGCATCTTCCTGCACCTTTGGGAAAGGATGGCAAACCTCGTAAAGAT TTTAACCAAAAAAGTTTTGAAGTGCATAGAAGCAGAGTAACTTTACAGTTACAAGAAATT TTTGATTTTGATATTTCCTTGGAGAATTGGAGTTTTATTCCTAATAAGAAACTTCCTATT GAAATTAAGAAAGCACCCAAATTTTTGAGACTAAAGGTACCTTTAAATAATGATATAACT TCAGGAATGTCTTCTAGGAGTAAGTTGAAATGTAATAAATTTCTTTAA
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  • Fasta :-

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Chro.50310      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India