Chro.60017 | CAAX prenyl protease

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.60017OTHER0.9982330.0015490.000217
No Results

  • Fasta :-

    >Chro.60017 MQTVIGNKLVQGIFLINLIKYLLYLYVDLRQKKCYDIKEIPKYILDAYKDCGEVSNEEFK KSQSYSNSKMVFGLISRAVTFVINWVFVFYVIYPLMWEIIYTRISSNEYVSSLLFCGVMM LLDYPISLAFDLYYTFVLEEKYGFNNSTLKIFIMDQIKSGLLVSVFGTILISVMIYIANN TGKYFYVYIALVQFGFIFIISIIYPIIIVPIFNKLTPVENQELAEKISKLCKDVNFPLKN LYQMDASLRSNHGNAFFSGAFKSKSIILYDTILDFPQDEIVAIIGHEIGHWKNWDNYKLL FFSFIQTFVTLFIFHLTFSWNELYLSFGFSLDPKLGGRNLVLSLLVFSYVLGPFSSIVGI LYSIMSQRAEYKADEFSFNLGFGDFLANSLFRLSKKSSSCMIFDPIYSFIHLSHPTVCDR IVNLKKLKDKKN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/522 Sequence name : 522 Sequence length : 432 VALUES OF COMPUTED PARAMETERS Coef20 : 3.923 CoefTot : -1.043 ChDiff : 5 ZoneTo : 27 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.418 2.812 0.549 1.036 MesoH : 0.937 1.412 0.035 0.584 MuHd_075 : 31.067 33.545 10.703 8.671 MuHd_095 : 17.555 11.146 4.664 3.271 MuHd_100 : 11.806 10.812 3.691 2.858 MuHd_105 : 20.513 22.264 7.942 5.923 Hmax_075 : 21.200 28.100 5.307 8.700 Hmax_095 : 13.900 19.400 2.174 6.150 Hmax_100 : 14.900 17.500 3.585 6.330 Hmax_105 : 17.200 24.150 4.827 7.660 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2775 0.7225 DFMC : 0.6437 0.3563
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 432 Chro.60017 MQTVIGNKLVQGIFLINLIKYLLYLYVDLRQKKCYDIKEIPKYILDAYKDCGEVSNEEFKKSQSYSNSKMVFGLISRAVT 80 FVINWVFVFYVIYPLMWEIIYTRISSNEYVSSLLFCGVMMLLDYPISLAFDLYYTFVLEEKYGFNNSTLKIFIMDQIKSG 160 LLVSVFGTILISVMIYIANNTGKYFYVYIALVQFGFIFIISIIYPIIIVPIFNKLTPVENQELAEKISKLCKDVNFPLKN 240 LYQMDASLRSNHGNAFFSGAFKSKSIILYDTILDFPQDEIVAIIGHEIGHWKNWDNYKLLFFSFIQTFVTLFIFHLTFSW 320 NELYLSFGFSLDPKLGGRNLVLSLLVFSYVLGPFSSIVGILYSIMSQRAEYKADEFSFNLGFGDFLANSLFRLSKKSSSC 400 MIFDPIYSFIHLSHPTVCDRIVNLKKLKDKKN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60017 8 QTVIGNK|LV 0.065 . Chro.60017 20 FLINLIK|YL 0.058 . Chro.60017 30 YLYVDLR|QK 0.068 . Chro.60017 32 YVDLRQK|KC 0.055 . Chro.60017 33 VDLRQKK|CY 0.322 . Chro.60017 38 KKCYDIK|EI 0.068 . Chro.60017 42 DIKEIPK|YI 0.067 . Chro.60017 49 YILDAYK|DC 0.074 . Chro.60017 60 VSNEEFK|KS 0.063 . Chro.60017 61 SNEEFKK|SQ 0.181 . Chro.60017 69 QSYSNSK|MV 0.078 . Chro.60017 77 VFGLISR|AV 0.102 . Chro.60017 103 WEIIYTR|IS 0.086 . Chro.60017 141 TFVLEEK|YG 0.057 . Chro.60017 150 FNNSTLK|IF 0.060 . Chro.60017 158 FIMDQIK|SG 0.062 . Chro.60017 183 IANNTGK|YF 0.083 . Chro.60017 214 IVPIFNK|LT 0.058 . Chro.60017 226 NQELAEK|IS 0.054 . Chro.60017 229 LAEKISK|LC 0.059 . Chro.60017 232 KISKLCK|DV 0.104 . Chro.60017 239 DVNFPLK|NL 0.070 . Chro.60017 249 QMDASLR|SN 0.115 . Chro.60017 262 FFSGAFK|SK 0.104 . Chro.60017 264 SGAFKSK|SI 0.100 . Chro.60017 292 HEIGHWK|NW 0.068 . Chro.60017 298 KNWDNYK|LL 0.069 . Chro.60017 334 GFSLDPK|LG 0.070 . Chro.60017 338 DPKLGGR|NL 0.075 . Chro.60017 368 YSIMSQR|AE 0.098 . Chro.60017 372 SQRAEYK|AD 0.074 . Chro.60017 392 LANSLFR|LS 0.088 . Chro.60017 395 SLFRLSK|KS 0.113 . Chro.60017 396 LFRLSKK|SS 0.214 . Chro.60017 420 HPTVCDR|IV 0.095 . Chro.60017 425 DRIVNLK|KL 0.067 . Chro.60017 426 RIVNLKK|LK 0.099 . Chro.60017 428 VNLKKLK|DK 0.067 . Chro.60017 430 LKKLKDK|KN 0.071 . Chro.60017 431 KKLKDKK|N- 0.100 . ____________________________^_________________

  • Fasta :-

    >Chro.60017 ATGCAAACAGTAATTGGAAATAAATTGGTTCAGGGAATCTTTCTGATCAACTTAATCAAA TATTTACTCTACTTATACGTTGATCTTAGACAAAAAAAATGTTATGATATCAAAGAGATT CCTAAGTATATATTAGATGCCTACAAAGACTGTGGAGAAGTTTCCAATGAAGAATTTAAG AAGTCCCAATCATACAGCAATTCAAAGATGGTATTTGGACTGATTAGTAGAGCAGTCACC TTTGTTATTAACTGGGTATTTGTTTTTTATGTAATTTATCCATTGATGTGGGAAATTATT TACACAAGAATTAGTTCGAATGAATACGTCTCATCTTTATTATTTTGTGGGGTAATGATG TTATTAGATTATCCTATTAGTCTTGCTTTCGATCTTTATTACACGTTTGTTCTGGAAGAG AAATATGGTTTTAACAACTCAACATTGAAGATATTTATAATGGATCAGATCAAGTCAGGA CTTCTTGTTTCTGTATTTGGAACGATTCTAATTTCTGTAATGATATACATTGCTAATAAT ACAGGTAAATACTTTTATGTATATATTGCTCTAGTACAATTTGGTTTCATATTTATCATT TCAATAATATATCCAATTATTATTGTCCCTATTTTTAACAAACTCACTCCAGTTGAGAAT CAAGAACTTGCAGAAAAAATCAGTAAACTTTGTAAAGATGTTAATTTCCCATTAAAGAAT CTATATCAAATGGATGCTTCTCTCAGATCGAATCATGGAAATGCATTCTTTTCAGGTGCA TTCAAATCTAAATCTATCATTTTATATGATACTATTCTTGATTTCCCCCAAGATGAGATA GTTGCAATTATAGGGCATGAAATAGGCCACTGGAAGAACTGGGATAACTACAAACTATTG TTCTTTTCATTTATCCAAACATTTGTAACTCTTTTCATTTTCCACTTAACGTTTTCATGG AATGAACTTTACTTATCATTTGGTTTCTCTTTAGATCCAAAACTTGGAGGTAGGAATTTA GTTCTATCTCTCCTTGTTTTCTCCTATGTATTGGGTCCTTTCAGCTCAATTGTTGGAATT CTTTATTCTATCATGTCTCAACGTGCTGAGTATAAAGCTGATGAGTTTTCATTTAATCTT GGATTTGGGGATTTTCTTGCAAATTCACTATTTAGACTCTCAAAGAAATCAAGTTCTTGC ATGATATTCGACCCTATTTATAGTTTTATCCACTTATCTCATCCCACTGTATGTGACAGA ATTGTCAACCTAAAGAAGTTGAAAGATAAAAAAAACTAA
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  • Fasta :-

    MQTVIGNKLVQGIFLINLIKYLLYLYVDLRQKKCYDIKEIPKYILDAYKDCGEVSNEEFK KSQSYSNSKMVFGLISRAVTFVINWVFVFYVIYPLMWEIIYTRISSNEYVSSLLFCGVMM LLDYPISLAFDLYYTFVLEEKYGFNNSTLKIFIMDQIKSGLLVSVFGTILISVMIYIANN TGKYFYVYIALVQFGFIFIISIIYPIIIVPIFNKLTPVENQELAEKISKLCKDVNFPLKN LYQMDASLRSNHGNAFFSGAFKSKSIILYDTILDFPQDEIVAIIGHEIGHWKNWDNYKLL FFSFIQTFVTLFIFHLTFSWNELYLSFGFSLDPKLGGRNLVLSLLVFSYVLGPFSSIVGI LYSIMSQRAEYKADEFSFNLGFGDFLANSLFRLSKKSSSCMIFDPIYSFIHLSHPTVCDR IVNLKKLKDKKN

    No Results
  • title: Zn binding site
  • coordinates: H286,H290,E370,H414
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.60017394 SLFRLSKKSS0.997unspChro.60017394 SLFRLSKKSS0.997unspChro.60017394 SLFRLSKKSS0.997unspChro.6001764 SKKSQSYSNS0.993unspChro.60017105 SYTRISSNEY0.994unsp

Chro.60017      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India