Chro.60109 | multi-pass transmembrane protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.60109OTHER0.9991240.0007920.000084
No Results

  • Fasta :-

    >Chro.60109 MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIID PKTGEKDRSTESLSRKDAMMFPVISSIALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVAL METILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENPDDPRGHEIKITIHHLWSLAL SLALGIILIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLY HLISSSLQTPTFCTVLVSYLLGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNK SSDAWNYSEEADSDEKINDSKESSEEDNSQSKTSTRKNSNELKQKKDD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/191 Sequence name : 191 Sequence length : 408 VALUES OF COMPUTED PARAMETERS Coef20 : 4.261 CoefTot : -0.182 ChDiff : -3 ZoneTo : 59 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.218 2.529 0.524 0.842 MesoH : 1.324 1.725 0.169 0.665 MuHd_075 : 28.184 26.966 11.689 5.744 MuHd_095 : 16.320 16.827 5.584 4.020 MuHd_100 : 21.796 20.969 7.474 5.686 MuHd_105 : 24.023 23.706 8.132 6.761 Hmax_075 : 18.400 23.100 8.008 5.620 Hmax_095 : 14.963 24.500 4.646 5.513 Hmax_100 : 16.800 19.300 3.707 6.310 Hmax_105 : 19.800 23.200 4.755 7.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7001 0.2999 DFMC : 0.4626 0.5374 This protein is probably imported in chloroplast. f(Ser) = 0.1186 f(Arg) = 0.0000 CMi = 1.69492 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 408 Chro.60109 MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIIDPKTGEKDRSTESLSRKDAMM 80 FPVISSIALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVALMETILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENP 160 DDPRGHEIKITIHHLWSLALSLALGIILIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV 240 MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLYHLISSSLQTPTFCTVLVSYL 320 LGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNKSSDAWNYSEEADSDEKINDSKESSEEDNSQSKTSTRKNSN 400 ELKQKKDD 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60109 8 GQACCNK|SL 0.088 . Chro.60109 30 ILITNFK|PL 0.064 . Chro.60109 62 QTIIDPK|TG 0.064 . Chro.60109 66 DPKTGEK|DR 0.064 . Chro.60109 68 KTGEKDR|ST 0.133 . Chro.60109 75 STESLSR|KD 0.074 . Chro.60109 76 TESLSRK|DA 0.167 . Chro.60109 97 SLYLAYK|FL 0.064 . Chro.60109 134 ISIVIYK|CD 0.070 . Chro.60109 140 KCDDICK|DT 0.068 . Chro.60109 143 DICKDTK|LI 0.061 . Chro.60109 164 ENPDDPR|GH 0.098 . Chro.60109 169 PRGHEIK|IT 0.088 . Chro.60109 218 ISIGSFK|IG 0.064 . Chro.60109 246 VMVTVAK|SF 0.076 . Chro.60109 253 SFQGPAK|LI 0.081 . Chro.60109 264 VSFDPWK|QS 0.070 . Chro.60109 285 FISLCLR|FD 0.073 . Chro.60109 289 CLRFDLK|DY 0.076 . Chro.60109 293 DLKDYTK|KH 0.064 . Chro.60109 294 LKDYTKK|HN 0.092 . Chro.60109 334 CVMLYFK|AA 0.069 . Chro.60109 358 VLSVVYR|NK 0.101 . Chro.60109 360 SVVYRNK|SS 0.090 . Chro.60109 376 EADSDEK|IN 0.059 . Chro.60109 381 EKINDSK|ES 0.068 . Chro.60109 392 EDNSQSK|TS 0.064 . Chro.60109 396 QSKTSTR|KN 0.126 . Chro.60109 397 SKTSTRK|NS 0.070 . Chro.60109 403 KNSNELK|QK 0.072 . Chro.60109 405 SNELKQK|KD 0.068 . Chro.60109 406 NELKQKK|DD 0.118 . ____________________________^_________________

  • Fasta :-

    >Chro.60109 ATGGGTCAAGCCTGTTGTAATAAGAGTTTAATGGCATATTGCCTGAGCTACTTAGTTTTA GCTCTTGCAATTCTTATCACAAACTTTAAGCCTCTTCCAATTATAGTTCAGATGTTAATG TACACGTCATCGATTATTTATATCGGATCTTATTTATCTCTTTCTCAAACAATTATTGAT CCTAAAACGGGAGAGAAGGATCGAAGCACAGAATCACTTTCCAGGAAAGATGCAATGATG TTCCCAGTCATTAGTTCGATTGCCTTGTTTTCACTATATTTGGCATATAAATTTCTCCCT GTTTACTGGGTAAATTTGCTCTTGACTTCATACTTATTCATAATTGGTGCAGTTGCGCTG ATGGAGACTATTTTACAGTTCATATCAATTGTAATTTATAAATGTGATGATATTTGTAAA GATACCAAATTGATAATTGTTGACACTCATTTTAATTTCTTTGGATACTTTGAGAATCCA GATGATCCAAGAGGCCACGAAATTAAGATAACTATTCATCATTTGTGGTCACTTGCACTT AGTTTGGCCCTTGGGATCATTTTGATAATAACAGATTCGTGGATTATTCACAATCTCTTT GCAATTGCTTTCTGTATCCAAGCAATCTCTCTCATTTCCATTGGCAGTTTCAAAATTGGA GCTATTTTACTGTGTGGATTATTTGTTTATGATATATTTTGGGTATTTGGAACAGACGTT ATGGTAACAGTTGCAAAATCTTTCCAAGGACCAGCTAAACTCATCTTTCCTGTTTCATTT GATCCATGGAAACAAAGTATATTGGGTCTCGGAGATATTGTAATTCCTGGACTTTTCATA TCTCTATGTTTGAGATTTGATCTCAAAGATTACACAAAGAAACATAATCAGAGTCTTTAC CATTTGATTTCCAGCTCCCTACAAACCCCCACATTCTGCACAGTTTTAGTCTCATATCTA CTTGGACTCATTACAACTGCCTGTGTTATGTTATACTTTAAAGCAGCTCAACCTGCATTA CTTTACTTGGTTCCATTCTGTCTTATTAGTATGGTCTTGTCTGTAGTGTATAGAAACAAG TCTTCTGATGCTTGGAATTATTCTGAGGAAGCTGACTCTGATGAAAAAATTAACGACTCC AAAGAGAGCTCCGAGGAGGATAACTCACAGAGTAAAACTTCAACTAGAAAAAATTCAAAT GAATTAAAACAAAAAAAGGATGACTGA
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  • Fasta :-

    MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIID PKTGEKDRSTESLSRKDAMMFPVISSIALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVAL METILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENPDDPRGHEIKITIHHLWSLAL SLALGIILIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLY HLISSSLQTPTFCTVLVSYLLGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNK SSDAWNYSEEADSDEKINDSKESSEEDNSQSKTSTRKNSNELKQKKDD

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.60109380 SKINDSKESS0.993unspChro.60109380 SKINDSKESS0.993unspChro.60109380 SKINDSKESS0.993unspChro.60109383 SDSKESSEED0.993unspChro.60109384 SSKESSEEDN0.998unspChro.60109394 SQSKTSTRKN0.995unspChro.6010969 SEKDRSTESL0.994unspChro.6010974 STESLSRKDA0.998unsp

Chro.60109      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India