Chro.60190 | Rad4-related protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.60190OTHER0.9931140.0047290.002157
No Results

  • Fasta :-

    >Chro.60190 MQKVKNEARQVYILGWLIHLRILNRIVDNIFIKSHILSLYLYYNQEYDTQKSIRGIYQWF RKYFKTYYLPNEYWIYKLHNFETKTNNAFSKSNWMGAYYSLFSNEDKNFAPCLNGVTYNA TGRVENNFLEKFQEIYRQFAPLIDQRSFFLGKILGRMISSILSGKCSAEASNILFATLLR SLGHHCRLTLFIPPIINFKKSCELQCNDRRAELWVEVFEPKFNKWISVDIHRGGWNFTGC STVPFVTYPEKNTPSIEHNSDKGLFSKLFLSEFNDDSDDSDKNLSLKKITPISVIPLKKT ETRRRSVKYEMSNIVEQDEQRESLAFEFSNKKKTESLTLIQLQCKIDISRTNIKHKINES IGWWIISVNEYGYLRETTGRYVSDWSQVFQAQQKNSFKQKVESIISTINSTSNQCSSRLL KLELLDDFELEKIIHENDVIPISKTSFKNHPKYAIISCLNSLEIIHPKEPIVGYFQGEPI YLRENVQTLKTKTQWDQEQREIKIGQQPIKIIFKKKNDDADLKGKVKLEYYAEFQTQIKP LAELNHLDQIPKDHFKSINISIKGNIPNSCVHIKDSCEGLNNDKVMFTSRYYSTWKTENI IDIIKRSNIDYARAFIGYDFKNGSKPKYDGVIIKKKDVTPFQSLKKRFELMNINKMANFI WNDVLQSAKDFLNSLSRNNLSNNTLNKDYDPGSEPNCQKLINVNYKFCKIKNLSERLLEE SYKAINKKKRKQIDT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/157 Sequence name : 157 Sequence length : 735 VALUES OF COMPUTED PARAMETERS Coef20 : 3.794 CoefTot : -1.543 ChDiff : 27 ZoneTo : 45 KR : 6 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.047 1.371 0.009 0.458 MesoH : -0.511 0.455 -0.311 0.191 MuHd_075 : 35.584 33.549 11.565 10.115 MuHd_095 : 43.895 22.265 10.418 9.406 MuHd_100 : 41.475 25.149 10.569 8.648 MuHd_105 : 39.687 27.951 10.847 9.352 Hmax_075 : 21.200 28.800 5.871 9.000 Hmax_095 : 17.150 19.250 4.761 6.895 Hmax_100 : 18.400 23.800 4.413 7.020 Hmax_105 : 14.350 21.117 4.040 6.921 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5023 0.4977 DFMC : 0.6642 0.3358
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 735 Chro.60190 MQKVKNEARQVYILGWLIHLRILNRIVDNIFIKSHILSLYLYYNQEYDTQKSIRGIYQWFRKYFKTYYLPNEYWIYKLHN 80 FETKTNNAFSKSNWMGAYYSLFSNEDKNFAPCLNGVTYNATGRVENNFLEKFQEIYRQFAPLIDQRSFFLGKILGRMISS 160 ILSGKCSAEASNILFATLLRSLGHHCRLTLFIPPIINFKKSCELQCNDRRAELWVEVFEPKFNKWISVDIHRGGWNFTGC 240 STVPFVTYPEKNTPSIEHNSDKGLFSKLFLSEFNDDSDDSDKNLSLKKITPISVIPLKKTETRRRSVKYEMSNIVEQDEQ 320 RESLAFEFSNKKKTESLTLIQLQCKIDISRTNIKHKINESIGWWIISVNEYGYLRETTGRYVSDWSQVFQAQQKNSFKQK 400 VESIISTINSTSNQCSSRLLKLELLDDFELEKIIHENDVIPISKTSFKNHPKYAIISCLNSLEIIHPKEPIVGYFQGEPI 480 YLRENVQTLKTKTQWDQEQREIKIGQQPIKIIFKKKNDDADLKGKVKLEYYAEFQTQIKPLAELNHLDQIPKDHFKSINI 560 SIKGNIPNSCVHIKDSCEGLNNDKVMFTSRYYSTWKTENIIDIIKRSNIDYARAFIGYDFKNGSKPKYDGVIIKKKDVTP 640 FQSLKKRFELMNINKMANFIWNDVLQSAKDFLNSLSRNNLSNNTLNKDYDPGSEPNCQKLINVNYKFCKIKNLSERLLEE 720 SYKAINKKKRKQIDT 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ............... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60190 3 ----MQK|VK 0.060 . Chro.60190 5 --MQKVK|NE 0.061 . Chro.60190 9 KVKNEAR|QV 0.141 . Chro.60190 21 GWLIHLR|IL 0.099 . Chro.60190 25 HLRILNR|IV 0.132 . Chro.60190 33 VDNIFIK|SH 0.080 . Chro.60190 51 QEYDTQK|SI 0.099 . Chro.60190 54 DTQKSIR|GI 0.138 . Chro.60190 61 GIYQWFR|KY 0.081 . Chro.60190 62 IYQWFRK|YF 0.091 . Chro.60190 65 WFRKYFK|TY 0.056 . Chro.60190 77 NEYWIYK|LH 0.058 . Chro.60190 84 LHNFETK|TN 0.068 . Chro.60190 91 TNNAFSK|SN 0.117 . Chro.60190 107 LFSNEDK|NF 0.076 . Chro.60190 123 TYNATGR|VE 0.081 . Chro.60190 131 ENNFLEK|FQ 0.077 . Chro.60190 137 KFQEIYR|QF 0.082 . Chro.60190 146 APLIDQR|SF 0.104 . Chro.60190 152 RSFFLGK|IL 0.082 . Chro.60190 156 LGKILGR|MI 0.123 . Chro.60190 165 SSILSGK|CS 0.065 . Chro.60190 180 LFATLLR|SL 0.123 . Chro.60190 187 SLGHHCR|LT 0.098 . Chro.60190 199 PPIINFK|KS 0.059 . Chro.60190 200 PIINFKK|SC 0.158 . Chro.60190 209 ELQCNDR|RA 0.083 . Chro.60190 210 LQCNDRR|AE 0.115 . Chro.60190 221 VEVFEPK|FN 0.066 . Chro.60190 224 FEPKFNK|WI 0.073 . Chro.60190 232 ISVDIHR|GG 0.083 . Chro.60190 251 FVTYPEK|NT 0.066 . Chro.60190 262 IEHNSDK|GL 0.088 . Chro.60190 267 DKGLFSK|LF 0.060 . Chro.60190 282 DSDDSDK|NL 0.063 . Chro.60190 287 DKNLSLK|KI 0.070 . Chro.60190 288 KNLSLKK|IT 0.081 . Chro.60190 298 ISVIPLK|KT 0.072 . Chro.60190 299 SVIPLKK|TE 0.080 . Chro.60190 303 LKKTETR|RR 0.099 . Chro.60190 304 KKTETRR|RS 0.148 . Chro.60190 305 KTETRRR|SV 0.349 . Chro.60190 308 TRRRSVK|YE 0.214 . Chro.60190 321 VEQDEQR|ES 0.082 . Chro.60190 331 AFEFSNK|KK 0.062 . Chro.60190 332 FEFSNKK|KT 0.077 . Chro.60190 333 EFSNKKK|TE 0.130 . Chro.60190 345 LIQLQCK|ID 0.059 . Chro.60190 350 CKIDISR|TN 0.079 . Chro.60190 354 ISRTNIK|HK 0.065 . Chro.60190 356 RTNIKHK|IN 0.096 . Chro.60190 375 NEYGYLR|ET 0.070 . Chro.60190 380 LRETTGR|YV 0.182 . Chro.60190 394 VFQAQQK|NS 0.065 . Chro.60190 398 QQKNSFK|QK 0.067 . Chro.60190 400 KNSFKQK|VE 0.083 . Chro.60190 418 SNQCSSR|LL 0.092 . Chro.60190 421 CSSRLLK|LE 0.090 . Chro.60190 432 DDFELEK|II 0.059 . Chro.60190 444 DVIPISK|TS 0.058 . Chro.60190 448 ISKTSFK|NH 0.061 . Chro.60190 452 SFKNHPK|YA 0.080 . Chro.60190 468 LEIIHPK|EP 0.070 . Chro.60190 483 GEPIYLR|EN 0.079 . Chro.60190 490 ENVQTLK|TK 0.059 . Chro.60190 492 VQTLKTK|TQ 0.071 . Chro.60190 500 QWDQEQR|EI 0.093 . Chro.60190 503 QEQREIK|IG 0.127 . Chro.60190 510 IGQQPIK|II 0.077 . Chro.60190 514 PIKIIFK|KK 0.058 . Chro.60190 515 IKIIFKK|KN 0.131 . Chro.60190 516 KIIFKKK|ND 0.141 . Chro.60190 523 NDDADLK|GK 0.058 . Chro.60190 525 DADLKGK|VK 0.057 . Chro.60190 527 DLKGKVK|LE 0.066 . Chro.60190 539 EFQTQIK|PL 0.059 . Chro.60190 552 HLDQIPK|DH 0.073 . Chro.60190 556 IPKDHFK|SI 0.116 . Chro.60190 563 SINISIK|GN 0.076 . Chro.60190 574 NSCVHIK|DS 0.104 . Chro.60190 584 EGLNNDK|VM 0.055 . Chro.60190 590 KVMFTSR|YY 0.109 . Chro.60190 596 RYYSTWK|TE 0.058 . Chro.60190 605 NIIDIIK|RS 0.053 . Chro.60190 606 IIDIIKR|SN 0.295 . Chro.60190 613 SNIDYAR|AF 0.093 . Chro.60190 621 FIGYDFK|NG 0.057 . Chro.60190 625 DFKNGSK|PK 0.060 . Chro.60190 627 KNGSKPK|YD 0.094 . Chro.60190 634 YDGVIIK|KK 0.069 . Chro.60190 635 DGVIIKK|KD 0.073 . Chro.60190 636 GVIIKKK|DV 0.232 . Chro.60190 645 TPFQSLK|KR 0.061 . Chro.60190 646 PFQSLKK|RF 0.077 . Chro.60190 647 FQSLKKR|FE 0.250 . Chro.60190 655 ELMNINK|MA 0.070 . Chro.60190 669 DVLQSAK|DF 0.063 . Chro.60190 677 FLNSLSR|NN 0.069 . Chro.60190 687 SNNTLNK|DY 0.090 . Chro.60190 699 SEPNCQK|LI 0.061 . Chro.60190 706 LINVNYK|FC 0.082 . Chro.60190 709 VNYKFCK|IK 0.069 . Chro.60190 711 YKFCKIK|NL 0.078 . Chro.60190 716 IKNLSER|LL 0.126 . Chro.60190 723 LLEESYK|AI 0.073 . Chro.60190 727 SYKAINK|KK 0.068 . Chro.60190 728 YKAINKK|KR 0.112 . Chro.60190 729 KAINKKK|RK 0.097 . Chro.60190 730 AINKKKR|KQ 0.240 . Chro.60190 731 INKKKRK|QI 0.159 . ____________________________^_________________

  • Fasta :-

    >Chro.60190 ATGCAAAAAGTCAAAAATGAAGCAAGACAGGTCTATATCTTGGGTTGGCTAATCCACTTA AGAATTCTTAATCGAATTGTTGACAACATTTTCATTAAATCTCACATTTTATCCCTGTAC CTATATTATAATCAAGAATATGATACACAAAAAAGTATTAGAGGAATATATCAGTGGTTC AGAAAGTACTTCAAAACATATTATTTACCAAATGAATATTGGATTTACAAACTCCATAAT TTTGAAACGAAGACTAATAATGCGTTTTCGAAATCAAATTGGATGGGTGCATACTATTCT TTATTTTCAAATGAAGATAAAAATTTTGCCCCATGCTTAAATGGAGTAACGTATAATGCA ACTGGAAGAGTCGAGAATAATTTTCTTGAAAAATTTCAGGAAATATACAGACAATTCGCA CCTCTGATAGATCAACGTAGTTTCTTTCTTGGTAAAATTCTCGGAAGAATGATCAGTTCT ATTTTATCTGGAAAATGTAGTGCTGAGGCCAGTAACATTCTTTTTGCTACTCTGCTCCGA TCGCTAGGTCATCATTGTCGCCTAACGTTATTTATTCCCCCTATTATTAACTTTAAAAAA AGTTGTGAATTGCAATGCAACGATAGGAGGGCTGAGCTTTGGGTTGAGGTCTTCGAACCA AAGTTCAATAAATGGATTTCAGTCGATATTCACCGTGGGGGGTGGAACTTCACAGGATGT TCTACAGTTCCGTTTGTAACTTATCCGGAAAAAAATACTCCTTCAATTGAGCACAATAGC GATAAGGGATTGTTTTCAAAACTATTCTTAAGTGAATTTAATGATGACTCTGACGATTCA GATAAAAATTTGAGTCTTAAAAAAATAACACCCATATCAGTTATTCCCTTAAAAAAAACT GAAACTAGACGAAGATCAGTCAAATATGAAATGAGTAATATTGTTGAGCAAGATGAACAA AGAGAATCTTTAGCATTTGAATTTTCAAATAAAAAGAAAACAGAATCATTAACACTCATT CAATTACAGTGCAAAATCGATATCTCAAGGACAAATATTAAACATAAGATTAATGAGAGC ATTGGATGGTGGATTATATCTGTTAATGAGTATGGGTACTTAAGAGAGACCACTGGAAGA TATGTTTCAGACTGGTCTCAAGTGTTTCAAGCTCAACAGAAGAATTCATTTAAACAAAAG GTTGAGTCAATAATCTCAACAATAAATTCCACTTCCAATCAGTGTAGCTCTAGGCTGCTT AAATTGGAATTATTAGATGATTTCGAATTGGAAAAAATTATACACGAAAATGACGTAATT CCTATTTCAAAAACATCTTTCAAAAACCATCCAAAATACGCCATTATTTCATGTCTTAAT TCTTTAGAAATCATTCATCCAAAGGAGCCTATTGTTGGATATTTTCAGGGCGAGCCAATT TATCTTAGAGAAAATGTCCAAACGTTAAAGACTAAGACTCAGTGGGATCAAGAACAACGC GAAATTAAGATTGGTCAGCAACCAATAAAAATTATCTTCAAAAAGAAAAATGATGACGCT GACTTAAAGGGCAAAGTGAAACTAGAATATTATGCAGAATTTCAGACGCAGATTAAACCT TTGGCAGAGTTGAACCACCTTGATCAAATTCCAAAAGATCACTTTAAGTCAATAAATATT TCTATTAAAGGCAATATACCTAATTCATGCGTTCATATAAAAGATTCTTGTGAAGGTCTT AATAACGATAAAGTTATGTTTACTTCCAGGTATTACTCTACGTGGAAAACTGAAAATATT ATTGACATAATTAAAAGAAGTAACATCGACTACGCAAGAGCGTTTATTGGTTATGACTTT AAAAATGGATCAAAACCTAAGTACGATGGAGTAATTATTAAGAAAAAGGATGTTACTCCG TTTCAATCACTAAAAAAACGATTTGAATTAATGAATATAAATAAAATGGCTAATTTCATC TGGAATGACGTTCTGCAAAGTGCTAAAGATTTTTTGAATAGCCTCTCTCGGAATAATTTG TCAAACAATACATTAAATAAAGACTACGATCCAGGTTCAGAGCCCAATTGTCAAAAGCTA ATTAATGTAAATTACAAATTCTGCAAAATAAAAAACTTATCAGAAAGATTATTAGAAGAA AGTTACAAAGCAATTAACAAAAAAAAGAGAAAACAAATCGATACATAA
  • Download Fasta

  • Fasta :-

    MQKVKNEARQVYILGWLIHLRILNRIVDNIFIKSHILSLYLYYNQEYDTQKSIRGIYQWF RKYFKTYYLPNEYWIYKLHNFETKTNNAFSKSNWMGAYYSLFSNEDKNFAPCLNGVTYNA TGRVENNFLEKFQEIYRQFAPLIDQRSFFLGKILGRMISSILSGKCSAEASNILFATLLR SLGHHCRLTLFIPPIINFKKSCELQCNDRRAELWVEVFEPKFNKWISVDIHRGGWNFTGC STVPFVTYPEKNTPSIEHNSDKGLFSKLFLSEFNDDSDDSDKNLSLKKITPISVIPLKKT ETRRRSVKYEMSNIVEQDEQRESLAFEFSNKKKTESLTLIQLQCKIDISRTNIKHKINES IGWWIISVNEYGYLRETTGRYVSDWSQVFQAQQKNSFKQKVESIISTINSTSNQCSSRLL KLELLDDFELEKIIHENDVIPISKTSFKNHPKYAIISCLNSLEIIHPKEPIVGYFQGEPI YLRENVQTLKTKTQWDQEQREIKIGQQPIKIIFKKKNDDADLKGKVKLEYYAEFQTQIKP LAELNHLDQIPKDHFKSINISIKGNIPNSCVHIKDSCEGLNNDKVMFTSRYYSTWKTENI IDIIKRSNIDYARAFIGYDFKNGSKPKYDGVIIKKKDVTPFQSLKKRFELMNINKMANFI WNDVLQSAKDFLNSLSRNNLSNNTLNKDYDPGSEPNCQKLINVNYKFCKIKNLSERLLEE SYKAINKKKRKQIDT

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.60190306 STRRRSVKYE0.998unspChro.60190306 STRRRSVKYE0.998unspChro.60190306 STRRRSVKYE0.998unspChro.60190446 SISKTSFKNH0.994unspChro.60190593 SSRYYSTWKT0.993unspChro.60190163 SSSILSGKCS0.991unspChro.60190280 SDSDDSDKNL0.996unsp

Chro.60190      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India