Chro.60521 | ubiquitin-specific protease

_IDPredictionOTHERSPmTPCS_Position
Chro.60521OTHER0.9998340.0000550.000111
No Results

  • Fasta :-

    >Chro.60521 MNELFEEYLKLIVSKIERKDPVYKAQCQLSFKDSFSEGGLYVNLKNFEAYSRDFLEWDHN QSGCRLYLSIKGTRKYHSENIDNPTNLSIGKEEGYFPEKSFFEDLFQYGLVSFPDMEVME LTDSRVHKELSEKLNYIIQYDQNMELSKDTDSLVAWAEERKVSRHAENLFQVSSPKQISP KGWTCETCGASTNLWLNLSDGFIGCGRRLYGVGGGCFDGKDEGAALLHYQQHTERPLAVK LGTITQFGNADVFSYDPQEDDLVLDPHLVKHLSVFGINVGQLEKTEKSLTEMQIEQNNKL DLTSGTESEECGSFLPMNKLFKKGDLLTTLVGLENSGNSCYVNVVLQLLASIPEVGELFS IHFQDLLEIYSKYFIQKTRPRESIVIQFSKVIKALLTNDVINDRNYKISSRSEDIQKAIS ELKEKGINENIIESLTESEVNPCLVHILPSILKRTISKGNPEFSSSHQQDTLEYFTFLQE KLSDDLKKYYNHSSQEIQKLIQQFINLFSFFIGERLECKQTGSVKLTSQLNNVLSLPIPK DLITYSSDTRQIKKPKHAFGEDGEDLATPKSNNVKEEQDMSDDHECFSDISLLLSNWRQE EIVENFLSPCTNQLGKAGKSNFIKSMSKYLIIHMQRFYLSEDWRPKKINLSVKVPNFLDL ESLRDSEELKPGEKPFPEGVDEVNKSLKEEVQVPESLVNSVLDLGFTKSHAELAVKNTFS TDIDICINWILTNIDSINSMDLTSSDSSSSSSSSSSNTSKTNNSASHQDLEAIKNIISIC CCSRDIAEKAFKISNQNLERAIQMIFDDPSIIESFEDTQLQQVSVGPDLSSKLIELDDGP GKYELIGVICHLGKSVHSGHYICYNKRKIDSSINPSSQPTESSCPSSLWVRFNDTKVYLS KEDDFPHKEKGYIYLYRRTN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/328 Sequence name : 328 Sequence length : 920 VALUES OF COMPUTED PARAMETERS Coef20 : 3.543 CoefTot : -0.134 ChDiff : -36 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.665 1.359 0.119 0.537 MesoH : -0.516 0.433 -0.372 0.243 MuHd_075 : 14.609 5.233 3.656 0.360 MuHd_095 : 55.062 33.776 14.790 11.588 MuHd_100 : 46.342 27.512 12.032 9.262 MuHd_105 : 26.625 15.532 6.842 5.014 Hmax_075 : 0.233 10.850 -0.553 2.123 Hmax_095 : 18.200 21.175 3.575 7.175 Hmax_100 : 13.900 18.200 1.861 6.060 Hmax_105 : 2.300 12.800 -0.717 4.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8704 0.1296 DFMC : 0.9383 0.0617
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 920 Chro.60521 MNELFEEYLKLIVSKIERKDPVYKAQCQLSFKDSFSEGGLYVNLKNFEAYSRDFLEWDHNQSGCRLYLSIKGTRKYHSEN 80 IDNPTNLSIGKEEGYFPEKSFFEDLFQYGLVSFPDMEVMELTDSRVHKELSEKLNYIIQYDQNMELSKDTDSLVAWAEER 160 KVSRHAENLFQVSSPKQISPKGWTCETCGASTNLWLNLSDGFIGCGRRLYGVGGGCFDGKDEGAALLHYQQHTERPLAVK 240 LGTITQFGNADVFSYDPQEDDLVLDPHLVKHLSVFGINVGQLEKTEKSLTEMQIEQNNKLDLTSGTESEECGSFLPMNKL 320 FKKGDLLTTLVGLENSGNSCYVNVVLQLLASIPEVGELFSIHFQDLLEIYSKYFIQKTRPRESIVIQFSKVIKALLTNDV 400 INDRNYKISSRSEDIQKAISELKEKGINENIIESLTESEVNPCLVHILPSILKRTISKGNPEFSSSHQQDTLEYFTFLQE 480 KLSDDLKKYYNHSSQEIQKLIQQFINLFSFFIGERLECKQTGSVKLTSQLNNVLSLPIPKDLITYSSDTRQIKKPKHAFG 560 EDGEDLATPKSNNVKEEQDMSDDHECFSDISLLLSNWRQEEIVENFLSPCTNQLGKAGKSNFIKSMSKYLIIHMQRFYLS 640 EDWRPKKINLSVKVPNFLDLESLRDSEELKPGEKPFPEGVDEVNKSLKEEVQVPESLVNSVLDLGFTKSHAELAVKNTFS 720 TDIDICINWILTNIDSINSMDLTSSDSSSSSSSSSSNTSKTNNSASHQDLEAIKNIISICCCSRDIAEKAFKISNQNLER 800 AIQMIFDDPSIIESFEDTQLQQVSVGPDLSSKLIELDDGPGKYELIGVICHLGKSVHSGHYICYNKRKIDSSINPSSQPT 880 ESSCPSSLWVRFNDTKVYLSKEDDFPHKEKGYIYLYRRTN 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ........................................ 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60521 10 LFEEYLK|LI 0.056 . Chro.60521 15 LKLIVSK|IE 0.062 . Chro.60521 18 IVSKIER|KD 0.085 . Chro.60521 19 VSKIERK|DP 0.079 . Chro.60521 24 RKDPVYK|AQ 0.064 . Chro.60521 32 QCQLSFK|DS 0.077 . Chro.60521 45 GLYVNLK|NF 0.071 . Chro.60521 52 NFEAYSR|DF 0.084 . Chro.60521 65 HNQSGCR|LY 0.081 . Chro.60521 71 RLYLSIK|GT 0.067 . Chro.60521 74 LSIKGTR|KY 0.084 . Chro.60521 75 SIKGTRK|YH 0.095 . Chro.60521 91 TNLSIGK|EE 0.061 . Chro.60521 99 EGYFPEK|SF 0.081 . Chro.60521 125 MELTDSR|VH 0.062 . Chro.60521 128 TDSRVHK|EL 0.363 . Chro.60521 133 HKELSEK|LN 0.064 . Chro.60521 148 QNMELSK|DT 0.080 . Chro.60521 160 VAWAEER|KV 0.106 . Chro.60521 161 AWAEERK|VS 0.090 . Chro.60521 164 EERKVSR|HA 0.142 . Chro.60521 176 FQVSSPK|QI 0.087 . Chro.60521 181 PKQISPK|GW 0.085 . Chro.60521 207 GFIGCGR|RL 0.091 . Chro.60521 208 FIGCGRR|LY 0.155 . Chro.60521 220 GGCFDGK|DE 0.100 . Chro.60521 235 YQQHTER|PL 0.106 . Chro.60521 240 ERPLAVK|LG 0.059 . Chro.60521 270 LDPHLVK|HL 0.067 . Chro.60521 284 NVGQLEK|TE 0.052 . Chro.60521 287 QLEKTEK|SL 0.086 . Chro.60521 299 QIEQNNK|LD 0.060 . Chro.60521 319 SFLPMNK|LF 0.056 . Chro.60521 322 PMNKLFK|KG 0.059 . Chro.60521 323 MNKLFKK|GD 0.083 . Chro.60521 372 LLEIYSK|YF 0.067 . Chro.60521 377 SKYFIQK|TR 0.059 . Chro.60521 379 YFIQKTR|PR 0.105 . Chro.60521 381 IQKTRPR|ES 0.103 . Chro.60521 390 IVIQFSK|VI 0.066 . Chro.60521 393 QFSKVIK|AL 0.070 . Chro.60521 404 NDVINDR|NY 0.073 . Chro.60521 407 INDRNYK|IS 0.163 . Chro.60521 411 NYKISSR|SE 0.123 . Chro.60521 417 RSEDIQK|AI 0.068 . Chro.60521 423 KAISELK|EK 0.070 . Chro.60521 425 ISELKEK|GI 0.073 . Chro.60521 453 ILPSILK|RT 0.057 . Chro.60521 454 LPSILKR|TI 0.484 . Chro.60521 458 LKRTISK|GN 0.064 . Chro.60521 481 FTFLQEK|LS 0.060 . Chro.60521 487 KLSDDLK|KY 0.063 . Chro.60521 488 LSDDLKK|YY 0.122 . Chro.60521 499 SSQEIQK|LI 0.072 . Chro.60521 515 SFFIGER|LE 0.076 . Chro.60521 519 GERLECK|QT 0.079 . Chro.60521 525 KQTGSVK|LT 0.068 . Chro.60521 540 LSLPIPK|DL 0.068 . Chro.60521 550 TYSSDTR|QI 0.102 . Chro.60521 553 SDTRQIK|KP 0.112 . Chro.60521 554 DTRQIKK|PK 0.104 . Chro.60521 556 RQIKKPK|HA 0.091 . Chro.60521 570 EDLATPK|SN 0.084 . Chro.60521 575 PKSNNVK|EE 0.069 . Chro.60521 598 LLLSNWR|QE 0.091 . Chro.60521 616 CTNQLGK|AG 0.060 . Chro.60521 619 QLGKAGK|SN 0.096 . Chro.60521 624 GKSNFIK|SM 0.150 . Chro.60521 628 FIKSMSK|YL 0.067 . Chro.60521 636 LIIHMQR|FY 0.082 . Chro.60521 644 YLSEDWR|PK 0.096 . Chro.60521 646 SEDWRPK|KI 0.065 . Chro.60521 647 EDWRPKK|IN 0.170 . Chro.60521 653 KINLSVK|VP 0.059 . Chro.60521 664 LDLESLR|DS 0.101 . Chro.60521 670 RDSEELK|PG 0.071 . Chro.60521 674 ELKPGEK|PF 0.058 . Chro.60521 685 GVDEVNK|SL 0.077 . Chro.60521 688 EVNKSLK|EE 0.066 . Chro.60521 708 LDLGFTK|SH 0.062 . Chro.60521 716 HAELAVK|NT 0.059 . Chro.60521 760 SSSNTSK|TN 0.078 . Chro.60521 774 QDLEAIK|NI 0.061 . Chro.60521 784 SICCCSR|DI 0.103 . Chro.60521 789 SRDIAEK|AF 0.066 . Chro.60521 792 IAEKAFK|IS 0.066 . Chro.60521 800 SNQNLER|AI 0.115 . Chro.60521 832 GPDLSSK|LI 0.061 . Chro.60521 842 LDDGPGK|YE 0.061 . Chro.60521 854 VICHLGK|SV 0.116 . Chro.60521 866 HYICYNK|RK 0.054 . Chro.60521 867 YICYNKR|KI 0.177 . Chro.60521 868 ICYNKRK|ID 0.124 . Chro.60521 891 PSSLWVR|FN 0.129 . Chro.60521 896 VRFNDTK|VY 0.065 . Chro.60521 901 TKVYLSK|ED 0.061 . Chro.60521 908 EDDFPHK|EK 0.064 . Chro.60521 910 DFPHKEK|GY 0.063 . Chro.60521 917 GYIYLYR|RT 0.098 . Chro.60521 918 YIYLYRR|TN 0.105 . ____________________________^_________________

  • Fasta :-

    >Chro.60521 ATGAATGAACTTTTTGAGGAGTATTTGAAGCTTATTGTAAGCAAGATAGAAAGAAAGGAT CCGGTTTACAAAGCACAATGTCAATTGTCATTTAAGGATTCTTTCTCTGAAGGGGGGCTT TACGTTAATTTGAAGAACTTTGAAGCATATAGTAGGGATTTTCTTGAATGGGACCATAAT CAGAGTGGCTGTAGGCTTTACTTGAGTATTAAAGGCACTAGGAAATATCACTCAGAAAAT ATTGATAATCCCACAAATTTGTCAATAGGCAAAGAGGAAGGATACTTTCCAGAGAAGTCA TTTTTTGAGGACTTATTCCAATACGGTTTGGTATCTTTTCCAGATATGGAAGTGATGGAA TTGACGGATAGCCGGGTTCATAAAGAACTTTCTGAAAAGCTTAATTATATAATCCAATAC GACCAGAACATGGAATTAAGCAAAGATACGGACTCTTTAGTTGCCTGGGCTGAAGAAAGA AAAGTTTCAAGGCATGCTGAGAATCTTTTTCAGGTATCTTCCCCTAAGCAAATTTCTCCT AAAGGTTGGACATGTGAGACTTGTGGAGCAAGTACAAATTTATGGTTAAATTTATCAGAT GGATTTATTGGATGTGGAAGAAGGTTATATGGAGTTGGAGGTGGTTGCTTTGATGGAAAG GATGAAGGAGCGGCTCTACTCCATTATCAACAACATACAGAAAGACCTTTGGCAGTTAAG TTGGGAACAATAACTCAGTTTGGAAATGCGGATGTATTTTCCTACGATCCACAGGAGGAT GATTTGGTTCTGGATCCTCATCTAGTAAAACATCTTTCAGTATTTGGAATAAATGTTGGG CAACTTGAAAAGACTGAAAAAAGTTTAACAGAAATGCAAATTGAGCAGAATAACAAGTTA GATTTGACAAGTGGAACAGAATCTGAAGAATGTGGTAGTTTTTTACCAATGAATAAACTA TTTAAAAAAGGTGATTTACTAACAACTCTTGTAGGACTTGAGAACTCTGGTAACTCTTGT TATGTTAACGTAGTTTTGCAACTTCTTGCATCTATTCCAGAAGTAGGAGAGCTTTTTTCA ATCCATTTTCAAGATTTACTGGAAATTTACTCAAAATATTTTATTCAAAAAACAAGGCCA AGAGAAAGCATTGTAATTCAGTTTTCTAAAGTAATTAAGGCTTTACTTACAAATGATGTA ATTAATGATCGTAATTATAAGATTTCATCTCGTTCTGAAGATATTCAAAAAGCTATTTCC GAGCTTAAAGAGAAAGGTATTAATGAAAATATCATTGAATCTTTAACAGAAAGTGAAGTC AATCCTTGTTTAGTGCATATTCTTCCTTCAATACTGAAAAGAACTATTTCTAAAGGTAAT CCTGAGTTTTCTTCATCCCATCAGCAAGATACTCTTGAATATTTTACTTTCCTTCAAGAA AAGCTATCTGATGATCTTAAAAAGTATTATAATCATTCTTCACAGGAAATTCAGAAGTTA ATTCAACAATTTATTAATCTTTTCAGTTTCTTCATTGGAGAAAGACTTGAATGTAAACAA ACAGGATCTGTTAAGCTTACTTCTCAGTTAAATAATGTATTATCACTACCAATACCTAAG GATTTAATTACTTATAGTTCAGACACTAGGCAAATCAAAAAGCCAAAACATGCCTTTGGT GAGGATGGTGAAGATTTAGCTACTCCTAAATCTAATAATGTTAAAGAAGAACAAGATATG AGTGATGATCACGAATGTTTTAGTGATATTTCCCTCTTACTTTCCAATTGGAGGCAAGAA GAGATAGTAGAAAATTTTCTCTCTCCTTGTACAAATCAATTGGGTAAAGCTGGAAAATCG AATTTTATTAAATCCATGTCAAAATACCTCATTATACATATGCAAAGATTCTATTTATCA GAAGATTGGAGACCTAAGAAAATTAACTTAAGTGTTAAAGTCCCAAATTTCTTAGATTTA GAATCTTTAAGAGATTCTGAAGAGCTAAAACCTGGTGAAAAGCCTTTCCCTGAAGGAGTA GATGAAGTTAATAAATCTTTAAAAGAAGAAGTCCAGGTTCCAGAATCTCTGGTGAATTCT GTTTTGGATTTGGGATTCACCAAATCACATGCTGAACTGGCTGTTAAGAATACCTTCTCA ACAGATATAGATATATGTATTAATTGGATACTGACAAATATTGACTCAATCAATTCCATG GATTTGACTTCATCCGATTCATCATCATCTTCTTCCTCATCTTCCTCAAATACTTCCAAA ACCAATAATTCAGCATCTCATCAGGATCTAGAAGCTATCAAGAATATTATTTCAATATGT TGTTGTTCAAGAGATATTGCAGAGAAGGCATTCAAAATTTCAAATCAAAACTTAGAGAGA GCTATCCAAATGATTTTTGATGATCCTTCAATTATTGAAAGTTTTGAAGACACACAATTA CAACAAGTATCAGTTGGGCCAGATCTTTCTTCAAAACTCATAGAACTTGATGATGGACCA GGAAAATATGAATTAATTGGAGTTATTTGCCATCTAGGAAAAAGTGTTCATAGCGGACAT TACATATGTTATAATAAAAGAAAGATTGATTCCTCTATTAATCCATCTAGCCAGCCAACA GAATCGTCCTGTCCTTCCTCTCTATGGGTAAGATTTAATGATACAAAAGTTTATTTAAGT AAAGAGGATGATTTTCCCCATAAGGAAAAAGGGTATATCTATCTTTATCGCAGAACTAAC TAA
  • Download Fasta

  • Fasta :-

    MNELFEEYLKLIVSKIERKDPVYKAQCQLSFKDSFSEGGLYVNLKNFEAYSRDFLEWDHN QSGCRLYLSIKGTRKYHSENIDNPTNLSIGKEEGYFPEKSFFEDLFQYGLVSFPDMEVME LTDSRVHKELSEKLNYIIQYDQNMELSKDTDSLVAWAEERKVSRHAENLFQVSSPKQISP KGWTCETCGASTNLWLNLSDGFIGCGRRLYGVGGGCFDGKDEGAALLHYQQHTERPLAVK LGTITQFGNADVFSYDPQEDDLVLDPHLVKHLSVFGINVGQLEKTEKSLTEMQIEQNNKL DLTSGTESEECGSFLPMNKLFKKGDLLTTLVGLENSGNSCYVNVVLQLLASIPEVGELFS IHFQDLLEIYSKYFIQKTRPRESIVIQFSKVIKALLTNDVINDRNYKISSRSEDIQKAIS ELKEKGINENIIESLTESEVNPCLVHILPSILKRTISKGNPEFSSSHQQDTLEYFTFLQE KLSDDLKKYYNHSSQEIQKLIQQFINLFSFFIGERLECKQTGSVKLTSQLNNVLSLPIPK DLITYSSDTRQIKKPKHAFGEDGEDLATPKSNNVKEEQDMSDDHECFSDISLLLSNWRQE EIVENFLSPCTNQLGKAGKSNFIKSMSKYLIIHMQRFYLSEDWRPKKINLSVKVPNFLDL ESLRDSEELKPGEKPFPEGVDEVNKSLKEEVQVPESLVNSVLDLGFTKSHAELAVKNTFS TDIDICINWILTNIDSINSMDLTSSDSSSSSSSSSSNTSKTNNSASHQDLEAIKNIISIC CCSRDIAEKAFKISNQNLERAIQMIFDDPSIIESFEDTQLQQVSVGPDLSSKLIELDDGP GKYELIGVICHLGKSVHSGHYICYNKRKIDSSINPSSQPTESSCPSSLWVRFNDTKVYLS KEDDFPHKEKGYIYLYRRTN

  • title: Active Site
  • coordinates: N335,C340,H860,D894
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.60521304 SLDLTSGTES0.993unspChro.60521304 SLDLTSGTES0.993unspChro.60521304 SLDLTSGTES0.993unspChro.60521308 SSGTESEECG0.995unspChro.60521662 SLDLESLRDS0.996unspChro.60521666 SSLRDSEELK0.995unspChro.60521686 SEVNKSLKEE0.997unspChro.60521748 SSSDSSSSSS0.994unspChro.60521754 SSSSSSSSNT0.994unspChro.60521766 SNNSASHQDL0.995unspChro.60521814 SSIIESFEDT0.992unspChro.60521900 SKVYLSKEDD0.998unspChro.6052130 SQCQLSFKDS0.997unspChro.60521179 SPKQISPKGW0.995unsp

Chro.60521      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India