Chro.70027 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
Chro.70027OTHER0.9679830.0044500.027567
No Results

  • Fasta :-

    >Chro.70027 MRPSLLLGSSVRRKNCIKNYLVSSDTEIDDENNNINTPVKNLTVKLKEEHYYSDNSNINE CSSRPSISLATSVRRKVYHIDSSEDSCTEDVNLSYLNSHPSTFTSDILENLHESPTQPCI HYKSEFEPNNNPSSNYSSIGSRRRNCIFSSEEEDIIPLSSRPSIKYQSSVRRKNNSRKIF TIIDSDSEDELNNNVASKRSSFCLGPELICEPNILNYTPEQHNIWRSFDSDLEIDETNVS IDTLQELEWKTAISSSDFEDEEVERKHQIGYHSEEIESEDKTGEYQNTPRMDEKEVLPEK YSLFSDEDIEDQKSDLEEIKENVSSKDLNSNQVTNLTKEIPLKNKSEKFGAFIRQRSSIA KHWYQKFNKQVFHNRLPEEVPIKWTGRLQRTAAQTLFITNIDGSKRVVIKLSKYVLDCEF RLKKTLLHECCHVAQFLLDSCIKPPHGQIFMKWGKVASKVFPDLKVEIYHNYEIIYKYRY QCLRCFQMFGRQTKINDETKIVCSVCNGTVIFIGRGTLSNSRKEFQVKAQNPPNTQKSKS NPYSEFVKEKFAEFKKDIRDGRTPSRRAPSIMKEIAKLWKQKKSEDLIQDFEKLSIND
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/850 Sequence name : 850 Sequence length : 598 VALUES OF COMPUTED PARAMETERS Coef20 : 4.421 CoefTot : 0.299 ChDiff : -4 ZoneTo : 24 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 1.324 0.269 0.421 MesoH : -1.089 0.196 -0.510 0.115 MuHd_075 : 31.152 29.332 11.026 8.222 MuHd_095 : 15.613 11.610 5.658 2.871 MuHd_100 : 10.985 14.234 4.358 4.143 MuHd_105 : 22.698 12.987 5.397 5.420 Hmax_075 : 7.500 19.512 2.922 4.104 Hmax_095 : -1.900 10.063 -0.262 2.292 Hmax_100 : -3.100 7.700 0.769 1.520 Hmax_105 : 0.700 5.133 0.094 1.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3397 0.6603 DFMC : 0.4131 0.5869 This protein is probably imported in mitochondria. f(Ser) = 0.2083 f(Arg) = 0.1250 CMi = 0.85034 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 598 Chro.70027 MRPSLLLGSSVRRKNCIKNYLVSSDTEIDDENNNINTPVKNLTVKLKEEHYYSDNSNINECSSRPSISLATSVRRKVYHI 80 DSSEDSCTEDVNLSYLNSHPSTFTSDILENLHESPTQPCIHYKSEFEPNNNPSSNYSSIGSRRRNCIFSSEEEDIIPLSS 160 RPSIKYQSSVRRKNNSRKIFTIIDSDSEDELNNNVASKRSSFCLGPELICEPNILNYTPEQHNIWRSFDSDLEIDETNVS 240 IDTLQELEWKTAISSSDFEDEEVERKHQIGYHSEEIESEDKTGEYQNTPRMDEKEVLPEKYSLFSDEDIEDQKSDLEEIK 320 ENVSSKDLNSNQVTNLTKEIPLKNKSEKFGAFIRQRSSIAKHWYQKFNKQVFHNRLPEEVPIKWTGRLQRTAAQTLFITN 400 IDGSKRVVIKLSKYVLDCEFRLKKTLLHECCHVAQFLLDSCIKPPHGQIFMKWGKVASKVFPDLKVEIYHNYEIIYKYRY 480 QCLRCFQMFGRQTKINDETKIVCSVCNGTVIFIGRGTLSNSRKEFQVKAQNPPNTQKSKSNPYSEFVKEKFAEFKKDIRD 560 GRTPSRRAPSIMKEIAKLWKQKKSEDLIQDFEKLSIND 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70027 2 -----MR|PS 0.077 . Chro.70027 12 LLGSSVR|RK 0.077 . Chro.70027 13 LGSSVRR|KN 0.157 . Chro.70027 14 GSSVRRK|NC 0.112 . Chro.70027 18 RRKNCIK|NY 0.065 . Chro.70027 40 NINTPVK|NL 0.073 . Chro.70027 45 VKNLTVK|LK 0.066 . Chro.70027 47 NLTVKLK|EE 0.062 . Chro.70027 64 INECSSR|PS 0.086 . Chro.70027 74 SLATSVR|RK 0.085 . Chro.70027 75 LATSVRR|KV 0.185 . Chro.70027 76 ATSVRRK|VY 0.088 . Chro.70027 123 QPCIHYK|SE 0.091 . Chro.70027 142 YSSIGSR|RR 0.091 . Chro.70027 143 SSIGSRR|RN 0.125 . Chro.70027 144 SIGSRRR|NC 0.113 . Chro.70027 161 IIPLSSR|PS 0.097 . Chro.70027 165 SSRPSIK|YQ 0.089 . Chro.70027 171 KYQSSVR|RK 0.080 . Chro.70027 172 YQSSVRR|KN 0.128 . Chro.70027 173 QSSVRRK|NN 0.159 . Chro.70027 177 RRKNNSR|KI 0.127 . Chro.70027 178 RKNNSRK|IF 0.115 . Chro.70027 198 NNNVASK|RS 0.073 . Chro.70027 199 NNVASKR|SS 0.319 . Chro.70027 226 EQHNIWR|SF 0.150 . Chro.70027 250 LQELEWK|TA 0.063 . Chro.70027 265 EDEEVER|KH 0.084 . Chro.70027 266 DEEVERK|HQ 0.072 . Chro.70027 281 EIESEDK|TG 0.054 . Chro.70027 290 EYQNTPR|MD 0.100 . Chro.70027 294 TPRMDEK|EV 0.088 . Chro.70027 300 KEVLPEK|YS 0.060 . Chro.70027 313 EDIEDQK|SD 0.066 . Chro.70027 320 SDLEEIK|EN 0.059 . Chro.70027 326 KENVSSK|DL 0.101 . Chro.70027 338 QVTNLTK|EI 0.061 . Chro.70027 343 TKEIPLK|NK 0.081 . Chro.70027 345 EIPLKNK|SE 0.068 . Chro.70027 348 LKNKSEK|FG 0.083 . Chro.70027 354 KFGAFIR|QR 0.093 . Chro.70027 356 GAFIRQR|SS 0.140 . Chro.70027 361 QRSSIAK|HW 0.110 . Chro.70027 366 AKHWYQK|FN 0.086 . Chro.70027 369 WYQKFNK|QV 0.087 . Chro.70027 375 KQVFHNR|LP 0.091 . Chro.70027 383 PEEVPIK|WT 0.081 . Chro.70027 387 PIKWTGR|LQ 0.090 . Chro.70027 390 WTGRLQR|TA 0.352 . Chro.70027 405 TNIDGSK|RV 0.066 . Chro.70027 406 NIDGSKR|VV 0.193 . Chro.70027 410 SKRVVIK|LS 0.079 . Chro.70027 413 VVIKLSK|YV 0.075 . Chro.70027 421 VLDCEFR|LK 0.076 . Chro.70027 423 DCEFRLK|KT 0.059 . Chro.70027 424 CEFRLKK|TL 0.218 . Chro.70027 443 LLDSCIK|PP 0.064 . Chro.70027 452 HGQIFMK|WG 0.071 . Chro.70027 455 IFMKWGK|VA 0.087 . Chro.70027 459 WGKVASK|VF 0.059 . Chro.70027 465 KVFPDLK|VE 0.053 . Chro.70027 477 NYEIIYK|YR 0.068 . Chro.70027 479 EIIYKYR|YQ 0.092 . Chro.70027 484 YRYQCLR|CF 0.095 . Chro.70027 491 CFQMFGR|QT 0.098 . Chro.70027 494 MFGRQTK|IN 0.125 . Chro.70027 500 KINDETK|IV 0.088 . Chro.70027 515 TVIFIGR|GT 0.086 . Chro.70027 522 GTLSNSR|KE 0.073 . Chro.70027 523 TLSNSRK|EF 0.113 . Chro.70027 528 RKEFQVK|AQ 0.072 . Chro.70027 537 NPPNTQK|SK 0.081 . Chro.70027 539 PNTQKSK|SN 0.089 . Chro.70027 548 PYSEFVK|EK 0.072 . Chro.70027 550 SEFVKEK|FA 0.104 . Chro.70027 555 EKFAEFK|KD 0.068 . Chro.70027 556 KFAEFKK|DI 0.202 . Chro.70027 559 EFKKDIR|DG 0.073 . Chro.70027 562 KDIRDGR|TP 0.224 . Chro.70027 566 DGRTPSR|RA 0.090 . Chro.70027 567 GRTPSRR|AP 0.168 . Chro.70027 573 RAPSIMK|EI 0.061 . Chro.70027 577 IMKEIAK|LW 0.066 . Chro.70027 580 EIAKLWK|QK 0.061 . Chro.70027 582 AKLWKQK|KS 0.080 . Chro.70027 583 KLWKQKK|SE 0.204 . Chro.70027 593 LIQDFEK|LS 0.062 . ____________________________^_________________

  • Fasta :-

    >Chro.70027 ATGCGTCCATCTCTACTTTTGGGGAGTTCTGTGAGAAGAAAAAATTGCATAAAAAACTAC TTGGTATCCTCAGATACTGAAATTGATGATGAAAATAATAACATAAATACTCCTGTAAAA AATCTAACTGTAAAGCTAAAAGAGGAGCACTATTATAGTGATAATTCAAACATTAATGAA TGCTCCTCAAGACCATCAATAAGCTTAGCAACATCTGTTAGAAGAAAAGTGTATCACATA GACTCAAGCGAAGATAGTTGTACAGAAGACGTAAACTTAAGCTATTTAAACAGTCATCCA AGTACTTTTACGTCTGATATACTGGAAAATCTCCATGAGTCCCCAACTCAGCCTTGTATT CACTATAAAAGTGAATTTGAGCCAAATAACAATCCCTCTTCTAATTACTCAAGTATTGGA AGTAGAAGGAGAAACTGTATATTTAGTAGCGAAGAAGAAGATATTATCCCGTTATCTTCG AGGCCTTCAATTAAATATCAGTCTTCAGTTAGAAGGAAAAACAATTCAAGAAAAATTTTT ACAATAATTGATTCAGATTCTGAAGATGAGTTAAACAATAATGTAGCAAGCAAAAGATCG TCTTTTTGTCTAGGCCCAGAACTAATCTGTGAGCCAAATATTCTCAACTATACACCAGAA CAACACAATATCTGGAGGTCATTTGACTCTGATTTAGAAATAGATGAAACAAATGTTTCT ATAGATACTCTACAAGAATTGGAGTGGAAAACAGCTATTTCATCTTCAGACTTTGAAGAT GAAGAAGTGGAAAGAAAACATCAGATTGGTTATCATTCTGAGGAAATTGAGTCTGAAGAC AAAACTGGAGAATATCAAAATACTCCCAGAATGGATGAAAAAGAAGTATTACCAGAAAAA TATAGTTTATTTAGTGATGAAGATATAGAGGATCAAAAGTCTGATTTGGAGGAGATCAAG GAAAATGTTAGTTCAAAAGATCTGAACTCTAATCAAGTAACAAACTTGACAAAAGAAATC CCCTTGAAAAATAAATCCGAAAAATTTGGAGCATTCATAAGACAAAGATCATCAATTGCA AAACATTGGTACCAAAAGTTTAATAAACAAGTTTTCCATAATAGGCTTCCAGAGGAAGTT CCAATTAAATGGACAGGAAGGCTTCAAAGAACAGCAGCTCAAACACTTTTTATTACTAAT ATAGATGGTTCTAAAAGAGTGGTAATTAAGCTTTCAAAGTATGTTTTGGATTGTGAATTC AGATTAAAGAAAACGCTGCTACATGAATGTTGTCATGTAGCTCAATTTTTATTAGATTCT TGTATTAAGCCTCCTCATGGACAAATATTTATGAAATGGGGAAAAGTAGCTTCAAAAGTG TTTCCTGACTTAAAAGTTGAGATATATCATAATTATGAAATAATATACAAATATAGATAT CAATGTTTAAGATGTTTTCAGATGTTTGGAAGACAAACCAAAATCAATGATGAAACCAAG ATTGTTTGCTCAGTCTGTAATGGTACAGTAATATTTATTGGAAGAGGAACTTTAAGCAAT AGCAGGAAGGAATTTCAAGTAAAAGCACAGAACCCTCCAAATACACAGAAGAGTAAATCC AACCCTTACTCTGAGTTTGTAAAGGAGAAGTTTGCAGAGTTCAAGAAGGATATTAGGGAT GGTAGAACCCCCTCCAGAAGAGCTCCAAGCATAATGAAAGAAATTGCAAAGCTTTGGAAA CAAAAAAAGTCTGAAGATTTGATTCAAGACTTCGAAAAGCTTTCCATAAACGATTAG
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  • Fasta :-

    MRPSLLLGSSVRRKNCIKNYLVSSDTEIDDENNNINTPVKNLTVKLKEEHYYSDNSNINE CSSRPSISLATSVRRKVYHIDSSEDSCTEDVNLSYLNSHPSTFTSDILENLHESPTQPCI HYKSEFEPNNNPSSNYSSIGSRRRNCIFSSEEEDIIPLSSRPSIKYQSSVRRKNNSRKIF TIIDSDSEDELNNNVASKRSSFCLGPELICEPNILNYTPEQHNIWRSFDSDLEIDETNVS IDTLQELEWKTAISSSDFEDEEVERKHQIGYHSEEIESEDKTGEYQNTPRMDEKEVLPEK YSLFSDEDIEDQKSDLEEIKENVSSKDLNSNQVTNLTKEIPLKNKSEKFGAFIRQRSSIA KHWYQKFNKQVFHNRLPEEVPIKWTGRLQRTAAQTLFITNIDGSKRVVIKLSKYVLDCEF RLKKTLLHECCHVAQFLLDSCIKPPHGQIFMKWGKVASKVFPDLKVEIYHNYEIIYKYRY QCLRCFQMFGRQTKINDETKIVCSVCNGTVIFIGRGTLSNSRKEFQVKAQNPPNTQKSKS NPYSEFVKEKFAEFKKDIRDGRTPSRRAPSIMKEIAKLWKQKKSEDLIQDFEKLSIND

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.7002786 SSSEDSCTED0.994unspChro.7002786 SSSEDSCTED0.994unspChro.7002786 SSSEDSCTED0.994unspChro.70027149 SNCIFSSEEE0.995unspChro.70027163 SSSRPSIKYQ0.995unspChro.70027305 SYSLFSDEDI0.998unspChro.70027324 SKENVSSKDL0.997unspChro.70027521 STLSNSRKEF0.993unspChro.7002772 SSLATSVRRK0.994unspChro.7002782 SYHIDSSEDS0.996unsp

Chro.70027      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India