Chro.70050 | random slug cDNA-11 (Fragment)

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_IDPredictionOTHERSPmTPCS_Position
Chro.70050OTHER0.9853480.0002250.014428
No Results

  • Fasta :-

    >Chro.70050 MASILSSFSSQYNELWKAIIRPPRDRYSIRDLGPMRFAIGKSIFKRSDFTLRNRRFQALH CSHFEPIDNERQSESLPCVIYLHGNCSSRREALPYIPLLLPIGITVMAVDLSGSGLSDGD YISLGYHEKDDLSVLVEYLRNSKRCSSVGVWGRSMGAATALMYSGVDKGDGFLKGIVIDS SFCSLRQLCHELVHHYIPLLPNFLVDSALSFIKSTINDKAKVNIDDIAPIKSVGQCKVPA LFISGTNDTLVNPNHSKTLHDNYAGEKMLMIIPGNHNSERPKFVKASIVIFFYTVFDCFI IPKSADALSSFLNTDLDLLFNYDGLYCDENGRIPKPITQSFYAIQQYIRHKTTNNVSAPM NTGLQKKNLGFSKEHSRREDMIRSSSNESFNDQSQGKGIQMRPPDVDKYIDRMIPLSSEN IKQSSSTIYSTGASCSRSTTFETISQGFERGDTMNTVSSFEEFKDTFSPVTQPNRSSGTE SGIEERVVGAEFGSDHLEGIVHYQISPSLPGMKHANNNNSDNQQQYFNQNQNIHQHSPSY HPYGLNQKGVTYTNGAISNGANSLLLSTGGLAPSTIGMSSVQHQAPTGVGVKKPSIASSL PKRVANYNYPGN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/172 Sequence name : 172 Sequence length : 612 VALUES OF COMPUTED PARAMETERS Coef20 : 4.435 CoefTot : 0.377 ChDiff : 3 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.859 2.000 0.339 0.771 MesoH : -0.148 0.513 -0.254 0.264 MuHd_075 : 10.964 10.518 3.793 2.198 MuHd_095 : 22.032 15.103 5.681 6.006 MuHd_100 : 26.873 20.849 6.936 7.393 MuHd_105 : 25.682 21.772 7.037 7.152 Hmax_075 : 7.117 8.167 -0.540 2.917 Hmax_095 : 17.000 14.600 1.519 6.510 Hmax_100 : 17.000 14.600 1.519 6.510 Hmax_105 : 14.200 12.000 1.571 4.910 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8030 0.1970 DFMC : 0.8707 0.1293
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 612 Chro.70050 MASILSSFSSQYNELWKAIIRPPRDRYSIRDLGPMRFAIGKSIFKRSDFTLRNRRFQALHCSHFEPIDNERQSESLPCVI 80 YLHGNCSSRREALPYIPLLLPIGITVMAVDLSGSGLSDGDYISLGYHEKDDLSVLVEYLRNSKRCSSVGVWGRSMGAATA 160 LMYSGVDKGDGFLKGIVIDSSFCSLRQLCHELVHHYIPLLPNFLVDSALSFIKSTINDKAKVNIDDIAPIKSVGQCKVPA 240 LFISGTNDTLVNPNHSKTLHDNYAGEKMLMIIPGNHNSERPKFVKASIVIFFYTVFDCFIIPKSADALSSFLNTDLDLLF 320 NYDGLYCDENGRIPKPITQSFYAIQQYIRHKTTNNVSAPMNTGLQKKNLGFSKEHSRREDMIRSSSNESFNDQSQGKGIQ 400 MRPPDVDKYIDRMIPLSSENIKQSSSTIYSTGASCSRSTTFETISQGFERGDTMNTVSSFEEFKDTFSPVTQPNRSSGTE 480 SGIEERVVGAEFGSDHLEGIVHYQISPSLPGMKHANNNNSDNQQQYFNQNQNIHQHSPSYHPYGLNQKGVTYTNGAISNG 560 ANSLLLSTGGLAPSTIGMSSVQHQAPTGVGVKKPSIASSLPKRVANYNYPGN 640 .............................................P.................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Chro.70050 17 QYNELWK|AI 0.066 . Chro.70050 21 LWKAIIR|PP 0.072 . Chro.70050 24 AIIRPPR|DR 0.304 . Chro.70050 26 IRPPRDR|YS 0.105 . Chro.70050 30 RDRYSIR|DL 0.245 . Chro.70050 36 RDLGPMR|FA 0.094 . Chro.70050 41 MRFAIGK|SI 0.093 . Chro.70050 45 IGKSIFK|RS 0.056 . Chro.70050 46 GKSIFKR|SD 0.511 *ProP* Chro.70050 52 RSDFTLR|NR 0.073 . Chro.70050 54 DFTLRNR|RF 0.067 . Chro.70050 55 FTLRNRR|FQ 0.227 . Chro.70050 71 EPIDNER|QS 0.086 . Chro.70050 89 HGNCSSR|RE 0.066 . Chro.70050 90 GNCSSRR|EA 0.180 . Chro.70050 129 SLGYHEK|DD 0.073 . Chro.70050 140 VLVEYLR|NS 0.064 . Chro.70050 143 EYLRNSK|RC 0.089 . Chro.70050 144 YLRNSKR|CS 0.303 . Chro.70050 153 SVGVWGR|SM 0.232 . Chro.70050 168 MYSGVDK|GD 0.079 . Chro.70050 174 KGDGFLK|GI 0.059 . Chro.70050 186 SSFCSLR|QL 0.127 . Chro.70050 213 SALSFIK|ST 0.073 . Chro.70050 219 KSTINDK|AK 0.058 . Chro.70050 221 TINDKAK|VN 0.078 . Chro.70050 231 DDIAPIK|SV 0.110 . Chro.70050 237 KSVGQCK|VP 0.059 . Chro.70050 257 VNPNHSK|TL 0.069 . Chro.70050 267 DNYAGEK|ML 0.065 . Chro.70050 280 GNHNSER|PK 0.111 . Chro.70050 282 HNSERPK|FV 0.141 . Chro.70050 285 ERPKFVK|AS 0.075 . Chro.70050 303 DCFIIPK|SA 0.087 . Chro.70050 332 YCDENGR|IP 0.071 . Chro.70050 335 ENGRIPK|PI 0.206 . Chro.70050 349 AIQQYIR|HK 0.083 . Chro.70050 351 QQYIRHK|TT 0.066 . Chro.70050 366 MNTGLQK|KN 0.057 . Chro.70050 367 NTGLQKK|NL 0.126 . Chro.70050 373 KNLGFSK|EH 0.075 . Chro.70050 377 FSKEHSR|RE 0.090 . Chro.70050 378 SKEHSRR|ED 0.134 . Chro.70050 383 RREDMIR|SS 0.157 . Chro.70050 397 NDQSQGK|GI 0.076 . Chro.70050 402 GKGIQMR|PP 0.093 . Chro.70050 408 RPPDVDK|YI 0.083 . Chro.70050 412 VDKYIDR|MI 0.081 . Chro.70050 422 LSSENIK|QS 0.084 . Chro.70050 437 TGASCSR|ST 0.129 . Chro.70050 450 ISQGFER|GD 0.115 . Chro.70050 464 SSFEEFK|DT 0.076 . Chro.70050 475 PVTQPNR|SS 0.129 . Chro.70050 486 ESGIEER|VV 0.163 . Chro.70050 513 PSLPGMK|HA 0.065 . Chro.70050 548 PYGLNQK|GV 0.070 . Chro.70050 592 PTGVGVK|KP 0.056 . Chro.70050 593 TGVGVKK|PS 0.102 . Chro.70050 602 IASSLPK|RV 0.079 . Chro.70050 603 ASSLPKR|VA 0.256 . ____________________________^_________________

  • Fasta :-

    >Chro.70050 ATGGCATCAATATTATCAAGTTTCTCCTCTCAATATAATGAGCTATGGAAAGCAATCATA AGACCTCCAAGAGACAGATATAGTATTCGTGATTTAGGCCCAATGCGTTTTGCTATTGGA AAGTCAATATTTAAGAGATCAGACTTCACTCTAAGAAATCGTCGCTTCCAAGCTCTTCAT TGCAGTCATTTTGAGCCTATTGATAATGAAAGACAATCTGAGTCTCTTCCTTGCGTAATT TATCTTCACGGAAATTGCAGTTCAAGGAGAGAGGCTCTTCCATATATTCCATTACTTCTT CCAATCGGAATTACTGTTATGGCTGTCGATTTGAGCGGTTCTGGTCTCTCTGATGGAGAT TATATAAGCTTAGGATACCACGAAAAAGATGATCTTTCAGTCTTGGTTGAATACTTAAGA AATTCAAAACGATGTAGCTCTGTTGGGGTTTGGGGGAGGTCAATGGGAGCTGCTACTGCA TTAATGTACTCAGGAGTTGATAAAGGTGATGGTTTCTTAAAAGGGATTGTTATCGACTCA AGCTTTTGCAGTCTTCGTCAGTTGTGCCATGAGTTGGTTCATCATTATATCCCATTATTA CCCAATTTTCTTGTTGATTCTGCACTTTCATTTATCAAATCTACAATTAATGACAAAGCA AAAGTTAATATTGACGATATTGCTCCAATTAAGTCTGTTGGTCAATGCAAGGTCCCTGCT TTGTTTATTTCTGGAACTAATGATACATTGGTTAATCCAAATCATTCAAAAACTTTGCAT GATAACTATGCTGGAGAGAAGATGCTTATGATCATCCCCGGTAATCACAATTCTGAGAGA CCCAAGTTTGTTAAGGCATCGATCGTTATTTTCTTTTATACAGTATTTGATTGTTTCATT ATTCCAAAATCTGCAGATGCTCTGAGTTCTTTTTTAAACACGGACTTGGACCTTCTATTC AACTATGATGGACTGTATTGCGATGAAAATGGTAGAATTCCAAAGCCAATCACTCAATCT TTTTATGCTATTCAGCAATACATAAGGCACAAAACTACTAACAATGTCTCTGCTCCTATG AATACTGGATTACAAAAGAAGAATCTTGGATTTAGTAAGGAACATTCGAGAAGAGAAGAC ATGATTAGATCGAGTTCGAATGAATCTTTCAATGACCAAAGTCAAGGCAAAGGAATCCAA ATGCGTCCTCCAGACGTTGACAAATACATTGATCGTATGATTCCTTTAAGTAGTGAAAAT ATTAAGCAATCTTCATCTACAATATATTCTACTGGTGCTTCATGCTCTAGAAGTACTACT TTTGAGACTATTAGTCAGGGGTTTGAGAGGGGCGACACAATGAATACTGTAAGTTCTTTT GAGGAATTTAAAGATACTTTTAGCCCTGTGACACAGCCAAATAGGTCATCAGGTACAGAA AGCGGTATTGAAGAGAGAGTAGTTGGGGCTGAATTTGGGTCAGACCATTTAGAAGGAATA GTTCATTATCAAATCTCCCCTTCTCTACCTGGAATGAAGCATGCTAACAATAATAATAGT GACAATCAACAACAGTATTTTAACCAGAATCAAAATATTCATCAGCATTCTCCTTCGTAC CACCCGTATGGTCTTAACCAGAAGGGGGTTACTTATACTAATGGTGCCATAAGTAATGGA GCTAATAGTTTATTGCTATCTACTGGAGGACTTGCTCCTTCAACTATAGGTATGAGCTCA GTTCAGCATCAGGCGCCAACAGGAGTGGGAGTCAAAAAACCAAGTATTGCTTCAAGTTTA CCAAAAAGGGTAGCTAATTATAACTACCCTGGGAATTAA
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  • Fasta :-

    MASILSSFSSQYNELWKAIIRPPRDRYSIRDLGPMRFAIGKSIFKRSDFTLRNRRFQALH CSHFEPIDNERQSESLPCVIYLHGNCSSRREALPYIPLLLPIGITVMAVDLSGSGLSDGD YISLGYHEKDDLSVLVEYLRNSKRCSSVGVWGRSMGAATALMYSGVDKGDGFLKGIVIDS SFCSLRQLCHELVHHYIPLLPNFLVDSALSFIKSTINDKAKVNIDDIAPIKSVGQCKVPA LFISGTNDTLVNPNHSKTLHDNYAGEKMLMIIPGNHNSERPKFVKASIVIFFYTVFDCFI IPKSADALSSFLNTDLDLLFNYDGLYCDENGRIPKPITQSFYAIQQYIRHKTTNNVSAPM NTGLQKKNLGFSKEHSRREDMIRSSSNESFNDQSQGKGIQMRPPDVDKYIDRMIPLSSEN IKQSSSTIYSTGASCSRSTTFETISQGFERGDTMNTVSSFEEFKDTFSPVTQPNRSSGTE SGIEERVVGAEFGSDHLEGIVHYQISPSLPGMKHANNNNSDNQQQYFNQNQNIHQHSPSY HPYGLNQKGVTYTNGAISNGANSLLLSTGGLAPSTIGMSSVQHQAPTGVGVKKPSIASSL PKRVANYNYPGN

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.70050372 SNLGFSKEHS0.992unspChro.70050372 SNLGFSKEHS0.992unspChro.70050372 SNLGFSKEHS0.992unspChro.70050376 SSKEHSRRED0.997unspChro.70050385 SMIRSSSNES0.995unspChro.70050389 SSSNESFNDQ0.994unspChro.70050417 SMIPLSSENI0.99unspChro.70050459 SNTVSSFEEF0.995unspChro.70050477 SPNRSSGTES0.991unspChro.70050481 SSGTESGIEE0.994unspChro.7005028 SRDRYSIRDL0.998unspChro.70050142 SYLRNSKRCS0.995unsp

Chro.70050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India