Chro.70132 | hypothetical protein

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  • Fasta :-

    >Chro.70132 MLSIMIDTHETMFELKQKTNSRLQVIGWYSTCSGINSVSCAVNNWFKTDIGSSKFQQTPL LSEPIHIVVDPSFSNGKLSINGYIQIQSTWTNSIVSIFRPIPLDIVASPCERLHISRILR PLLEKHHLNAVGIPPKSLPRTILGPEDEICTVLPLNNSNYNLQSGDVSQLLTKLILLVQR CQNYVRKVLSGEVSMDPMIGRQX
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/645 Sequence name : 645 Sequence length : 203 VALUES OF COMPUTED PARAMETERS Coef20 : 3.769 CoefTot : 0.234 ChDiff : 3 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.118 1.347 0.222 0.448 MesoH : -0.161 0.297 -0.314 0.219 MuHd_075 : 6.082 8.574 2.539 2.228 MuHd_095 : 28.664 11.513 5.765 3.418 MuHd_100 : 32.180 15.879 6.354 4.383 MuHd_105 : 29.932 16.259 5.953 4.204 Hmax_075 : 6.650 9.217 -0.769 3.488 Hmax_095 : 8.500 9.400 -0.858 2.870 Hmax_100 : 18.500 12.600 1.836 4.320 Hmax_105 : 14.000 9.400 -0.618 3.670 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9542 0.0458 DFMC : 0.9404 0.0596
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 203 Chro.70132 MLSIMIDTHETMFELKQKTNSRLQVIGWYSTCSGINSVSCAVNNWFKTDIGSSKFQQTPLLSEPIHIVVDPSFSNGKLSI 80 NGYIQIQSTWTNSIVSIFRPIPLDIVASPCERLHISRILRPLLEKHHLNAVGIPPKSLPRTILGPEDEICTVLPLNNSNY 160 NLQSGDVSQLLTKLILLVQRCQNYVRKVLSGEVSMDPMIGRQX 240 ................................................................................ 80 ................................................................................ 160 ........................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70132 16 ETMFELK|QK 0.064 . Chro.70132 18 MFELKQK|TN 0.071 . Chro.70132 22 KQKTNSR|LQ 0.079 . Chro.70132 47 AVNNWFK|TD 0.060 . Chro.70132 54 TDIGSSK|FQ 0.073 . Chro.70132 77 PSFSNGK|LS 0.061 . Chro.70132 99 SIVSIFR|PI 0.076 . Chro.70132 112 VASPCER|LH 0.069 . Chro.70132 117 ERLHISR|IL 0.097 . Chro.70132 120 HISRILR|PL 0.249 . Chro.70132 125 LRPLLEK|HH 0.059 . Chro.70132 136 AVGIPPK|SL 0.076 . Chro.70132 140 PPKSLPR|TI 0.086 . Chro.70132 173 VSQLLTK|LI 0.061 . Chro.70132 180 LILLVQR|CQ 0.080 . Chro.70132 186 RCQNYVR|KV 0.134 . Chro.70132 187 CQNYVRK|VL 0.116 . Chro.70132 201 MDPMIGR|QX 0.098 . ____________________________^_________________

  • Fasta :-

    >Chro.70132 ATGCTTTCAATAATGATAGATACTCATGAGACAATGTTTGAATTAAAACAAAAGACAAAT TCTAGATTGCAGGTTATTGGATGGTATAGTACATGTTCTGGTATTAATTCAGTAAGTTGT GCAGTGAATAACTGGTTTAAGACAGATATTGGTAGTTCAAAATTTCAACAAACTCCATTA TTATCTGAGCCTATTCATATTGTTGTGGATCCTTCATTTTCAAATGGAAAGTTATCTATT AATGGATATATTCAAATTCAATCAACATGGACAAATTCTATAGTTTCAATTTTTAGACCA ATTCCATTAGATATTGTTGCAAGCCCATGTGAAAGACTTCATATTTCAAGGATTTTAAGA CCATTACTTGAGAAACATCATTTAAATGCTGTAGGAATTCCTCCAAAGAGTCTTCCTAGA ACAATTCTTGGTCCAGAGGATGAAATATGTACAGTTTTACCTTTAAATAATTCAAATTAT AATTTACAATCTGGTGATGTTTCTCAATTATTAACAAAACTTATTCTTCTAGTTCAGAGA TGTCAGAATTATGTAAGGAAAGTACTTTCTGGTGAAGTTTCTATGGATCCAATGATAGGA AGACAGNATTGA
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Chro.70132      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India