Chro.70239 | mitochondrial processing peptidase alpha subunit

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.70239mTP0.1933410.0000760.806583CS pos: 36-37. LRS-IE. Pr: 0.2145
No Results

  • Fasta :-

    >Chro.70239 MIQQKICLFRHVLRNISTQVLRTKKPIFRQINGLRSIESYKIAPQNGIGPIFSELSNGMR VITLENSNKIASLGIIIKMGSRFESKSSFGSSRVLFNMILSQEGKTSQNCLPNKLALNGL MLAGGFNREYTSFLLEYLKDQEIENIQEFFDGIFKFYKKQFSGEELELAKKNIKEELLFE LENPSIMLNELLHSTAWKENSLGNNQSTSFDQVSDLNIQNLTDFRNSNFLSRNTIIVGTG ISHDHLIKKILNSSRKFDITEQNSVNNLKNDEQTMKVPKYVGGLVKNKLPHYGFTDILVA FETNLNWKGRELVALSVLQAYLGGGSSFSVGGPGKGIHSKLFLDVLNKFDWVESCNCFVN QYSDTGLFGIHITSYPGYSLESIKVIGKQLGKMKNISERELERAKNLVLSTIYTAYENRS HYMEEISKQILSYSEFIELDEIINCIRSIGIEDIKKVADLILSKADRPTVVAVGTDTNQV PNYNEIISIISRQVSNY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/930 Sequence name : 930 Sequence length : 497 VALUES OF COMPUTED PARAMETERS Coef20 : 4.508 CoefTot : -2.015 ChDiff : 4 ZoneTo : 53 KR : 9 DE : 1 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.371 1.271 0.166 0.550 MesoH : -0.082 0.349 -0.260 0.293 MuHd_075 : 45.352 28.923 14.243 10.013 MuHd_095 : 45.588 31.777 11.536 12.026 MuHd_100 : 46.246 31.009 12.026 11.612 MuHd_105 : 43.924 31.224 11.535 11.438 Hmax_075 : 16.217 19.833 5.396 6.055 Hmax_095 : 8.000 15.900 0.982 4.950 Hmax_100 : 11.300 17.000 2.110 5.200 Hmax_105 : 9.300 19.700 0.755 5.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0166 0.9834 DFMC : 0.0353 0.9647 This protein is probably imported in mitochondria. f(Ser) = 0.0755 f(Arg) = 0.0943 CMi = 0.37348 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 497 Chro.70239 MIQQKICLFRHVLRNISTQVLRTKKPIFRQINGLRSIESYKIAPQNGIGPIFSELSNGMRVITLENSNKIASLGIIIKMG 80 SRFESKSSFGSSRVLFNMILSQEGKTSQNCLPNKLALNGLMLAGGFNREYTSFLLEYLKDQEIENIQEFFDGIFKFYKKQ 160 FSGEELELAKKNIKEELLFELENPSIMLNELLHSTAWKENSLGNNQSTSFDQVSDLNIQNLTDFRNSNFLSRNTIIVGTG 240 ISHDHLIKKILNSSRKFDITEQNSVNNLKNDEQTMKVPKYVGGLVKNKLPHYGFTDILVAFETNLNWKGRELVALSVLQA 320 YLGGGSSFSVGGPGKGIHSKLFLDVLNKFDWVESCNCFVNQYSDTGLFGIHITSYPGYSLESIKVIGKQLGKMKNISERE 400 LERAKNLVLSTIYTAYENRSHYMEEISKQILSYSEFIELDEIINCIRSIGIEDIKKVADLILSKADRPTVVAVGTDTNQV 480 PNYNEIISIISRQVSNY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70239 5 --MIQQK|IC 0.053 . Chro.70239 10 QKICLFR|HV 0.146 . Chro.70239 14 LFRHVLR|NI 0.121 . Chro.70239 22 ISTQVLR|TK 0.098 . Chro.70239 24 TQVLRTK|KP 0.060 . Chro.70239 25 QVLRTKK|PI 0.284 . Chro.70239 29 TKKPIFR|QI 0.111 . Chro.70239 35 RQINGLR|SI 0.133 . Chro.70239 41 RSIESYK|IA 0.077 . Chro.70239 60 ELSNGMR|VI 0.086 . Chro.70239 69 TLENSNK|IA 0.080 . Chro.70239 78 SLGIIIK|MG 0.068 . Chro.70239 82 IIKMGSR|FE 0.086 . Chro.70239 86 GSRFESK|SS 0.091 . Chro.70239 93 SSFGSSR|VL 0.102 . Chro.70239 105 ILSQEGK|TS 0.072 . Chro.70239 114 QNCLPNK|LA 0.072 . Chro.70239 128 LAGGFNR|EY 0.086 . Chro.70239 139 FLLEYLK|DQ 0.063 . Chro.70239 155 FFDGIFK|FY 0.061 . Chro.70239 158 GIFKFYK|KQ 0.071 . Chro.70239 159 IFKFYKK|QF 0.122 . Chro.70239 170 EELELAK|KN 0.062 . Chro.70239 171 ELELAKK|NI 0.084 . Chro.70239 174 LAKKNIK|EE 0.053 . Chro.70239 198 LHSTAWK|EN 0.084 . Chro.70239 225 QNLTDFR|NS 0.064 . Chro.70239 232 NSNFLSR|NT 0.125 . Chro.70239 248 SHDHLIK|KI 0.058 . Chro.70239 249 HDHLIKK|IL 0.109 . Chro.70239 255 KILNSSR|KF 0.097 . Chro.70239 256 ILNSSRK|FD 0.128 . Chro.70239 269 NSVNNLK|ND 0.068 . Chro.70239 276 NDEQTMK|VP 0.060 . Chro.70239 279 QTMKVPK|YV 0.124 . Chro.70239 286 YVGGLVK|NK 0.057 . Chro.70239 288 GGLVKNK|LP 0.066 . Chro.70239 308 ETNLNWK|GR 0.065 . Chro.70239 310 NLNWKGR|EL 0.108 . Chro.70239 335 SVGGPGK|GI 0.079 . Chro.70239 340 GKGIHSK|LF 0.085 . Chro.70239 348 FLDVLNK|FD 0.057 . Chro.70239 384 YSLESIK|VI 0.081 . Chro.70239 388 SIKVIGK|QL 0.075 . Chro.70239 392 IGKQLGK|MK 0.065 . Chro.70239 394 KQLGKMK|NI 0.077 . Chro.70239 399 MKNISER|EL 0.132 . Chro.70239 403 SERELER|AK 0.101 . Chro.70239 405 RELERAK|NL 0.055 . Chro.70239 419 YTAYENR|SH 0.141 . Chro.70239 428 YMEEISK|QI 0.056 . Chro.70239 447 EIINCIR|SI 0.124 . Chro.70239 455 IGIEDIK|KV 0.070 . Chro.70239 456 GIEDIKK|VA 0.094 . Chro.70239 464 ADLILSK|AD 0.057 . Chro.70239 467 ILSKADR|PT 0.112 . Chro.70239 492 IISIISR|QV 0.158 . ____________________________^_________________

  • Fasta :-

    >Chro.70239 ATGATTCAACAGAAAATTTGTCTTTTCAGACATGTATTAAGAAATATAAGCACACAGGTT CTGAGAACTAAAAAACCTATTTTTAGACAAATAAATGGTTTGAGAAGCATAGAAAGTTAC AAAATTGCACCCCAAAATGGAATTGGGCCCATATTTTCCGAACTCAGTAATGGAATGAGA GTAATCACATTGGAAAATAGTAATAAAATAGCATCGCTGGGAATCATCATAAAGATGGGT TCTAGATTTGAATCAAAGAGTTCATTTGGATCATCAAGAGTTCTTTTTAATATGATACTT TCCCAAGAAGGAAAAACTTCGCAGAATTGCTTGCCAAATAAACTAGCATTAAACGGATTA ATGTTGGCAGGTGGCTTCAATAGAGAATATACTTCATTTTTATTGGAATATTTAAAAGAC CAGGAAATTGAAAATATCCAAGAATTCTTTGATGGAATATTTAAATTCTACAAAAAACAA TTCAGTGGTGAGGAATTAGAACTCGCTAAGAAAAATATTAAAGAGGAATTGTTGTTTGAG TTAGAGAACCCTAGCATAATGCTTAATGAACTTTTGCATTCTACCGCATGGAAAGAAAAT TCCCTAGGAAATAATCAATCAACATCTTTTGATCAAGTTTCAGATCTTAATATACAGAAT CTAACTGATTTTAGAAATTCAAATTTTCTTTCGCGTAATACTATAATTGTTGGAACTGGT ATCAGTCACGACCATTTAATTAAAAAGATCTTGAATTCATCAAGGAAGTTTGATATAACG GAACAAAATTCTGTCAATAATTTAAAAAACGATGAACAAACTATGAAAGTTCCAAAGTAT GTTGGTGGCTTAGTAAAAAATAAGTTGCCCCATTACGGTTTTACAGATATATTGGTCGCA TTTGAAACCAATCTGAATTGGAAAGGACGTGAATTGGTTGCATTATCTGTACTCCAGGCT TATCTTGGTGGTGGAAGCTCCTTTAGTGTGGGAGGTCCAGGGAAAGGGATTCATTCAAAA CTTTTCTTGGATGTATTAAATAAATTTGACTGGGTTGAAAGCTGTAATTGTTTTGTTAAC CAATACAGTGATACGGGATTATTTGGGATTCATATTACTTCTTACCCAGGATACTCATTA GAATCTATTAAGGTAATAGGAAAGCAGCTTGGTAAAATGAAAAATATCAGTGAAAGGGAG CTTGAAAGAGCTAAGAACCTAGTTCTAAGTACTATTTATACAGCTTACGAAAACAGGAGT CACTATATGGAAGAGATTTCCAAACAAATACTTTCATACTCTGAGTTCATTGAATTGGAT GAAATAATCAATTGTATCAGGAGTATAGGCATAGAAGATATCAAAAAGGTTGCGGATTTA ATTCTCTCCAAGGCAGACAGGCCTACAGTAGTCGCAGTTGGGACTGATACGAATCAAGTC CCAAATTACAACGAAATTATTTCAATAATATCTAGGCAAGTCAGCAATTATTAA
  • Download Fasta

  • Fasta :-

    MIQQKICLFRHVLRNISTQVLRTKKPIFRQINGLRSIESYKIAPQNGIGPIFSELSNGMR VITLENSNKIASLGIIIKMGSRFESKSSFGSSRVLFNMILSQEGKTSQNCLPNKLALNGL MLAGGFNREYTSFLLEYLKDQEIENIQEFFDGIFKFYKKQFSGEELELAKKNIKEELLFE LENPSIMLNELLHSTAWKENSLGNNQSTSFDQVSDLNIQNLTDFRNSNFLSRNTIIVGTG ISHDHLIKKILNSSRKFDITEQNSVNNLKNDEQTMKVPKYVGGLVKNKLPHYGFTDILVA FETNLNWKGRELVALSVLQAYLGGGSSFSVGGPGKGIHSKLFLDVLNKFDWVESCNCFVN QYSDTGLFGIHITSYPGYSLESIKVIGKQLGKMKNISERELERAKNLVLSTIYTAYENRS HYMEEISKQILSYSEFIELDEIINCIRSIGIEDIKKVADLILSKADRPTVVAVGTDTNQV PNYNEIISIISRQVSNY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.70239162 SKKQFSGEEL0.997unspChro.70239397 SMKNISEREL0.996unsp

Chro.70239      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India