Chro.70322 | thiolproteinase SmTP1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.70322OTHER0.8905830.1005830.008834
No Results

  • Fasta :-

    >Chro.70322 MQIGFPEKSLQIPNKSCGRKWNKFIIFINFISFFSIITKINGNLLHNGNYSVNGNESGVS RALKQEKDDHSILIGKKNETNTEIFSPSNYSSQSSTKPVDHRTENFIEKDFQKNNSLVEE DNLTSKFFDPFVFNFSIDVHQCISKYEKLNKYLQKISLIFYLFNKTRELENEGLNNNSTS ILKSENERVVNTTIKINIATNSGKMDNHLDIIIQSDVFFNSVYRTNTTWIDRLLDIPNIN SSPMNLLNLTNNQDNSQSIIDCICIFVSEVQSNLGLNRSSLEMCNIKIQEIILAIKSNPE ARFELTQLSLDRPPSKLIIPKNLGDKVTGYSWKESIAEGEEIQSENLLGRSVQKLEPTHS SGNELLKELNTENSNASNGVNETGEVTNKDIYFDSRDVNGGSCVYIPFDQGKCGGCYAFV VSASISISNCIQKLVLPAPLSPQQIIDCSMSFGNLGCDGGFYSNGWSYLLEQNVPKNYIC SWNEYPYIDSISSCKASACNGCLTISKYNVFTGLALNGDDGWDFVTTILPKVGSISLSIN SNLAGFSSYSDGIYKAPKCTTHSELNHAVIMIGYGINDNGDKYYVIQNSWGVSWGIGGFM NVSADSCDMFWYPGIIRQLSSESLPDKCTGNKLLLTGPGEINKPQKKSTEYNIFVKKTYY GICFIINILLLVY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/793 Sequence name : 793 Sequence length : 673 VALUES OF COMPUTED PARAMETERS Coef20 : 3.321 CoefTot : -3.405 ChDiff : -10 ZoneTo : 55 KR : 6 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.706 2.106 0.367 0.771 MesoH : 0.167 0.452 -0.079 0.300 MuHd_075 : 35.661 19.362 10.951 7.484 MuHd_095 : 48.291 26.836 13.730 9.803 MuHd_100 : 40.073 24.312 11.055 8.592 MuHd_105 : 36.198 23.075 10.297 8.604 Hmax_075 : 17.500 17.100 4.152 6.320 Hmax_095 : 6.000 18.725 -0.577 3.465 Hmax_100 : 9.700 12.300 1.124 4.500 Hmax_105 : 20.417 24.733 4.431 7.350 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9242 0.0758 DFMC : 0.9678 0.0322
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 673 Chro.70322 MQIGFPEKSLQIPNKSCGRKWNKFIIFINFISFFSIITKINGNLLHNGNYSVNGNESGVSRALKQEKDDHSILIGKKNET 80 NTEIFSPSNYSSQSSTKPVDHRTENFIEKDFQKNNSLVEEDNLTSKFFDPFVFNFSIDVHQCISKYEKLNKYLQKISLIF 160 YLFNKTRELENEGLNNNSTSILKSENERVVNTTIKINIATNSGKMDNHLDIIIQSDVFFNSVYRTNTTWIDRLLDIPNIN 240 SSPMNLLNLTNNQDNSQSIIDCICIFVSEVQSNLGLNRSSLEMCNIKIQEIILAIKSNPEARFELTQLSLDRPPSKLIIP 320 KNLGDKVTGYSWKESIAEGEEIQSENLLGRSVQKLEPTHSSGNELLKELNTENSNASNGVNETGEVTNKDIYFDSRDVNG 400 GSCVYIPFDQGKCGGCYAFVVSASISISNCIQKLVLPAPLSPQQIIDCSMSFGNLGCDGGFYSNGWSYLLEQNVPKNYIC 480 SWNEYPYIDSISSCKASACNGCLTISKYNVFTGLALNGDDGWDFVTTILPKVGSISLSINSNLAGFSSYSDGIYKAPKCT 560 THSELNHAVIMIGYGINDNGDKYYVIQNSWGVSWGIGGFMNVSADSCDMFWYPGIIRQLSSESLPDKCTGNKLLLTGPGE 640 INKPQKKSTEYNIFVKKTYYGICFIINILLLVY 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70322 8 QIGFPEK|SL 0.077 . Chro.70322 15 SLQIPNK|SC 0.127 . Chro.70322 19 PNKSCGR|KW 0.081 . Chro.70322 20 NKSCGRK|WN 0.104 . Chro.70322 23 CGRKWNK|FI 0.076 . Chro.70322 39 FFSIITK|IN 0.078 . Chro.70322 61 NESGVSR|AL 0.141 . Chro.70322 64 GVSRALK|QE 0.140 . Chro.70322 67 RALKQEK|DD 0.081 . Chro.70322 76 HSILIGK|KN 0.067 . Chro.70322 77 SILIGKK|NE 0.072 . Chro.70322 97 SSQSSTK|PV 0.098 . Chro.70322 102 TKPVDHR|TE 0.102 . Chro.70322 109 TENFIEK|DF 0.080 . Chro.70322 113 IEKDFQK|NN 0.076 . Chro.70322 126 EDNLTSK|FF 0.074 . Chro.70322 145 VHQCISK|YE 0.056 . Chro.70322 148 CISKYEK|LN 0.062 . Chro.70322 151 KYEKLNK|YL 0.069 . Chro.70322 155 LNKYLQK|IS 0.061 . Chro.70322 165 IFYLFNK|TR 0.058 . Chro.70322 167 YLFNKTR|EL 0.108 . Chro.70322 183 NSTSILK|SE 0.062 . Chro.70322 188 LKSENER|VV 0.121 . Chro.70322 195 VVNTTIK|IN 0.065 . Chro.70322 204 IATNSGK|MD 0.063 . Chro.70322 224 FFNSVYR|TN 0.088 . Chro.70322 232 NTTWIDR|LL 0.070 . Chro.70322 278 SNLGLNR|SS 0.101 . Chro.70322 287 LEMCNIK|IQ 0.068 . Chro.70322 296 EIILAIK|SN 0.070 . Chro.70322 302 KSNPEAR|FE 0.133 . Chro.70322 312 TQLSLDR|PP 0.085 . Chro.70322 316 LDRPPSK|LI 0.071 . Chro.70322 321 SKLIIPK|NL 0.088 . Chro.70322 326 PKNLGDK|VT 0.066 . Chro.70322 333 VTGYSWK|ES 0.075 . Chro.70322 350 SENLLGR|SV 0.353 . Chro.70322 354 LGRSVQK|LE 0.059 . Chro.70322 367 SGNELLK|EL 0.070 . Chro.70322 389 TGEVTNK|DI 0.069 . Chro.70322 396 DIYFDSR|DV 0.135 . Chro.70322 412 IPFDQGK|CG 0.076 . Chro.70322 433 ISNCIQK|LV 0.083 . Chro.70322 476 LEQNVPK|NY 0.067 . Chro.70322 495 DSISSCK|AS 0.061 . Chro.70322 507 GCLTISK|YN 0.056 . Chro.70322 531 VTTILPK|VG 0.059 . Chro.70322 555 YSDGIYK|AP 0.057 . Chro.70322 558 GIYKAPK|CT 0.079 . Chro.70322 582 INDNGDK|YY 0.063 . Chro.70322 617 WYPGIIR|QL 0.069 . Chro.70322 627 SESLPDK|CT 0.088 . Chro.70322 632 DKCTGNK|LL 0.060 . Chro.70322 643 GPGEINK|PQ 0.061 . Chro.70322 646 EINKPQK|KS 0.067 . Chro.70322 647 INKPQKK|ST 0.220 . Chro.70322 656 EYNIFVK|KT 0.069 . Chro.70322 657 YNIFVKK|TY 0.105 . ____________________________^_________________

  • Fasta :-

    >Chro.70322 ATGCAAATTGGGTTCCCAGAGAAAAGCCTGCAAATTCCAAATAAGTCATGTGGAAGAAAA TGGAATAAGTTCATTATATTTATCAATTTTATTAGTTTTTTCTCAATTATCACAAAAATA AATGGTAACTTATTACATAATGGAAACTACTCCGTGAACGGTAATGAATCCGGTGTGAGT CGTGCGTTGAAGCAAGAAAAAGATGACCACTCCATATTAATTGGAAAAAAAAACGAAACA AATACTGAAATATTTTCTCCAAGTAACTATTCTAGTCAAAGCTCCACTAAACCAGTAGAT CATCGCACTGAAAATTTCATAGAAAAAGATTTCCAGAAAAATAATAGTTTAGTTGAAGAA GATAATTTGACTTCTAAATTTTTCGATCCATTTGTATTCAATTTTTCCATTGATGTTCAT CAATGTATAAGCAAATACGAGAAGCTCAACAAATATCTTCAAAAGATCTCTTTGATTTTT TACTTATTTAATAAGACTCGTGAGCTTGAAAATGAGGGTTTAAATAACAATTCTACTAGC ATCTTGAAATCTGAGAATGAGAGAGTTGTAAATACTACAATTAAAATCAATATTGCAACT AATTCTGGAAAAATGGACAATCACCTTGATATAATTATTCAATCTGATGTGTTTTTTAAC TCTGTTTATAGAACAAATACCACTTGGATAGACAGATTGTTGGATATTCCAAATATTAAT TCAAGTCCTATGAATCTGTTAAATTTGACGAATAATCAAGATAATAGTCAATCAATTATA GATTGTATCTGTATATTTGTTTCTGAAGTTCAATCAAATTTAGGACTGAACAGATCTTCC TTAGAAATGTGTAATATAAAAATTCAGGAGATTATTTTGGCAATCAAGTCAAATCCAGAA GCGAGATTTGAATTGACTCAATTATCGCTTGATCGCCCCCCTTCCAAATTAATTATTCCA AAGAATTTAGGGGATAAAGTAACCGGATATAGCTGGAAAGAATCTATTGCGGAAGGAGAA GAGATACAATCTGAAAATCTGTTAGGTAGATCTGTACAAAAGCTTGAGCCCACGCATAGC AGTGGAAATGAACTCTTAAAGGAGTTGAATACAGAAAATTCGAACGCTAGTAACGGAGTT AATGAAACTGGCGAGGTAACAAATAAAGATATATATTTTGATTCGCGCGATGTAAATGGA GGTTCCTGTGTATATATACCTTTCGATCAGGGTAAATGCGGTGGATGTTATGCATTTGTT GTTAGCGCATCAATAAGTATTTCAAATTGTATACAAAAGCTGGTACTGCCTGCACCACTA TCTCCTCAACAAATAATTGATTGCAGCATGAGTTTTGGGAATTTAGGATGCGATGGCGGA TTTTATTCGAACGGTTGGAGTTACTTGCTTGAACAAAACGTCCCGAAAAATTACATTTGT TCTTGGAATGAATACCCTTATATCGACTCAATTAGTAGTTGCAAGGCGAGTGCTTGCAAT GGTTGTTTAACTATTAGCAAATATAACGTTTTTACTGGCCTTGCATTAAATGGCGATGAT GGCTGGGATTTTGTGACAACAATACTTCCGAAAGTCGGGTCAATTTCACTAAGTATTAAT TCTAATTTAGCCGGTTTTAGCAGCTATTCAGATGGAATTTATAAGGCACCAAAATGCACA ACTCACTCTGAACTGAACCATGCAGTAATTATGATCGGGTATGGAATAAATGACAATGGG GATAAATATTATGTAATACAAAATAGTTGGGGAGTGTCATGGGGAATTGGTGGTTTTATG AATGTTTCGGCAGATTCGTGTGACATGTTTTGGTACCCTGGTATTATCCGTCAACTTTCA TCAGAATCTTTGCCTGACAAATGCACAGGAAATAAATTGTTACTTACTGGTCCAGGAGAA ATAAATAAACCGCAAAAAAAATCTACTGAATACAATATTTTTGTGAAAAAAACATATTAT GGAATATGCTTTATAATTAATATCCTATTATTAGTGTATTAG
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  • Fasta :-

    MQIGFPEKSLQIPNKSCGRKWNKFIIFINFISFFSIITKINGNLLHNGNYSVNGNESGVS RALKQEKDDHSILIGKKNETNTEIFSPSNYSSQSSTKPVDHRTENFIEKDFQKNNSLVEE DNLTSKFFDPFVFNFSIDVHQCISKYEKLNKYLQKISLIFYLFNKTRELENEGLNNNSTS ILKSENERVVNTTIKINIATNSGKMDNHLDIIIQSDVFFNSVYRTNTTWIDRLLDIPNIN SSPMNLLNLTNNQDNSQSIIDCICIFVSEVQSNLGLNRSSLEMCNIKIQEIILAIKSNPE ARFELTQLSLDRPPSKLIIPKNLGDKVTGYSWKESIAEGEEIQSENLLGRSVQKLEPTHS SGNELLKELNTENSNASNGVNETGEVTNKDIYFDSRDVNGGSCVYIPFDQGKCGGCYAFV VSASISISNCIQKLVLPAPLSPQQIIDCSMSFGNLGCDGGFYSNGWSYLLEQNVPKNYIC SWNEYPYIDSISSCKASACNGCLTISKYNVFTGLALNGDDGWDFVTTILPKVGSISLSIN SNLAGFSSYSDGIYKAPKCTTHSELNHAVIMIGYGINDNGDKYYVIQNSWGVSWGIGGFM NVSADSCDMFWYPGIIRQLSSESLPDKCTGNKLLLTGPGEINKPQKKSTEYNIFVKKTYY GICFIINILLLVY

  • title: active site
  • coordinates: Q410,C416,H567,N588
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.70322331 SVTGYSWKES0.997unspChro.70322331 SVTGYSWKES0.997unspChro.70322331 SVTGYSWKES0.997unspChro.70322620 SIRQLSSESL0.996unspChro.7032295 SSSQSSTKPV0.991unspChro.70322116 SQKNNSLVEE0.99unsp

Chro.70322      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India