Chro.70327 | 26S proteasome regulatory particle non-ATPase subunit8

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

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  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
Chro.70327OTHER0.9974250.0010390.001536
No Results

  • Fasta :-

    >Chro.70327 MCLSGEHSGAAFYNVNSSLSNRKNIIIHPIVLLSIVDHYNRIAKGTSKRVVGTLLGELHD EDGIHVTNSYALPFEEDSRDPTVWYLDHNYHEQMYLMFKKINTKEKIVGWYSTGPKTKVV DIDIHELFRRYCPDPLYLIADVTADDFEYLSSPISAYFSMDEPNSVLKKKFAHVPCTIGA FEAEEVGVEHLLRDLKNTSTSTLITQISDTINSCKILVSKLKESKNYLNDIVEGRIPPNH RIISVLQDIFNLLPDLREPEAIYAFSNRYADMILTIYGMSCLRSVLSMHDLVNNVSENRT AFEASMKTCNSDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/266 Sequence name : 266 Sequence length : 313 VALUES OF COMPUTED PARAMETERS Coef20 : 3.830 CoefTot : -1.670 ChDiff : -10 ZoneTo : 56 KR : 6 DE : 2 CleavSite : 51 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 1.382 0.196 0.491 MesoH : -0.926 0.180 -0.459 0.155 MuHd_075 : 33.018 29.175 12.630 7.391 MuHd_095 : 48.993 28.015 12.721 10.550 MuHd_100 : 45.516 26.123 12.703 9.762 MuHd_105 : 42.756 25.312 12.246 9.540 Hmax_075 : 20.533 30.800 6.214 9.100 Hmax_095 : 12.338 14.350 2.680 4.944 Hmax_100 : 13.700 16.800 3.084 5.830 Hmax_105 : 14.117 17.500 3.286 6.078 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4240 0.5760 DFMC : 0.4727 0.5273 This protein is probably imported in mitochondria. f(Ser) = 0.1250 f(Arg) = 0.0536 CMi = 0.86207 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 313 Chro.70327 MCLSGEHSGAAFYNVNSSLSNRKNIIIHPIVLLSIVDHYNRIAKGTSKRVVGTLLGELHDEDGIHVTNSYALPFEEDSRD 80 PTVWYLDHNYHEQMYLMFKKINTKEKIVGWYSTGPKTKVVDIDIHELFRRYCPDPLYLIADVTADDFEYLSSPISAYFSM 160 DEPNSVLKKKFAHVPCTIGAFEAEEVGVEHLLRDLKNTSTSTLITQISDTINSCKILVSKLKESKNYLNDIVEGRIPPNH 240 RIISVLQDIFNLLPDLREPEAIYAFSNRYADMILTIYGMSCLRSVLSMHDLVNNVSENRTAFEASMKTCNSDL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70327 22 NSSLSNR|KN 0.111 . Chro.70327 23 SSLSNRK|NI 0.079 . Chro.70327 41 IVDHYNR|IA 0.075 . Chro.70327 44 HYNRIAK|GT 0.219 . Chro.70327 48 IAKGTSK|RV 0.071 . Chro.70327 49 AKGTSKR|VV 0.465 . Chro.70327 79 PFEEDSR|DP 0.075 . Chro.70327 99 QMYLMFK|KI 0.073 . Chro.70327 100 MYLMFKK|IN 0.098 . Chro.70327 104 FKKINTK|EK 0.062 . Chro.70327 106 KINTKEK|IV 0.120 . Chro.70327 116 WYSTGPK|TK 0.060 . Chro.70327 118 STGPKTK|VV 0.101 . Chro.70327 129 DIHELFR|RY 0.073 . Chro.70327 130 IHELFRR|YC 0.127 . Chro.70327 168 EPNSVLK|KK 0.073 . Chro.70327 169 PNSVLKK|KF 0.142 . Chro.70327 170 NSVLKKK|FA 0.168 . Chro.70327 193 GVEHLLR|DL 0.099 . Chro.70327 196 HLLRDLK|NT 0.118 . Chro.70327 215 DTINSCK|IL 0.067 . Chro.70327 220 CKILVSK|LK 0.061 . Chro.70327 222 ILVSKLK|ES 0.067 . Chro.70327 225 SKLKESK|NY 0.057 . Chro.70327 235 NDIVEGR|IP 0.075 . Chro.70327 241 RIPPNHR|II 0.111 . Chro.70327 257 NLLPDLR|EP 0.075 . Chro.70327 268 IYAFSNR|YA 0.192 . Chro.70327 283 YGMSCLR|SV 0.110 . Chro.70327 299 NNVSENR|TA 0.084 . Chro.70327 307 AFEASMK|TC 0.062 . ____________________________^_________________

  • Fasta :-

    >Chro.70327 ATGTGTCTAAGCGGAGAACATTCAGGTGCTGCATTCTACAACGTAAATTCCAGTTTAAGT AATCGAAAAAATATTATTATTCACCCAATTGTGCTTTTATCAATTGTAGATCATTATAAT AGGATTGCAAAGGGTACTTCAAAAAGGGTAGTTGGCACATTGCTAGGGGAACTTCATGAT GAAGATGGAATTCACGTTACAAATAGTTACGCTTTACCTTTTGAGGAGGATTCAAGAGAC CCAACGGTTTGGTATCTAGATCACAATTATCATGAACAAATGTATTTAATGTTTAAAAAG ATCAATACAAAAGAGAAAATTGTTGGTTGGTACAGCACTGGCCCCAAAACCAAGGTTGTT GATATCGACATACATGAACTATTTAGAAGATATTGCCCTGACCCATTATATTTAATTGCT GACGTAACTGCGGATGATTTTGAATATTTGTCAAGTCCAATTAGCGCTTATTTTTCAATG GATGAACCCAATAGTGTCTTAAAGAAAAAGTTTGCGCATGTTCCATGTACGATTGGCGCA TTCGAAGCAGAGGAAGTTGGTGTGGAACACCTATTGAGAGACCTTAAAAATACATCAACC TCTACTCTTATTACGCAAATTTCAGATACAATTAACTCTTGTAAAATACTTGTCTCTAAA TTAAAAGAATCGAAAAACTATTTGAATGATATAGTTGAAGGTAGGATACCTCCAAATCAC AGGATTATTTCTGTCCTTCAAGATATTTTTAACTTGCTTCCAGACTTGAGAGAGCCAGAA GCGATTTATGCATTTTCAAATAGGTATGCGGATATGATTCTAACAATATATGGGATGAGT TGCTTACGTTCTGTGCTTTCTATGCATGACCTAGTCAATAATGTTTCCGAGAATAGGACA GCCTTTGAAGCGAGTATGAAAACTTGCAACTCTGATTTATAG
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  • Fasta :-

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Chro.70327      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India