Chro.70408 | proteasome subunit alpha type 2 (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2)

_IDPredictionOTHERSPmTPCS_Position
Chro.70408OTHER0.9995680.0001100.000322
No Results

  • Fasta :-

    >Chro.70408 MDADYSFSLTTFSPSGKLVQIEYALNAVNSQGRPALGIKARNGVVIATEKKVASPLVEEH SIRKVELITSEIGCCFAGMPADFRVILKKSRKIAQVYYNTYREQIPVCELVREIATVMQE FTQSGGVRPFGISLLVAGFDSTRGPQLFQVDPSGAYFGWKASAIGKDMQNAKSFLEKRYN PDVEIEDALHTALLTLKECFEGAMNEDNIEVGIVGEDKNFTILSPQEIKDYLGEVE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/311 Sequence name : 311 Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 3.823 CoefTot : 0.000 ChDiff : -7 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.776 1.141 0.163 0.472 MesoH : -0.627 0.293 -0.351 0.174 MuHd_075 : 8.584 3.965 2.421 0.298 MuHd_095 : 12.183 5.712 3.555 2.083 MuHd_100 : 10.708 5.622 2.685 2.245 MuHd_105 : 6.523 4.640 2.448 2.038 Hmax_075 : 8.283 5.700 -0.327 2.260 Hmax_095 : 10.900 4.600 0.581 2.760 Hmax_100 : 11.400 5.200 0.722 3.320 Hmax_105 : 2.538 2.100 -1.553 2.287 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9824 0.0176 DFMC : 0.9670 0.0330
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 Chro.70408 MDADYSFSLTTFSPSGKLVQIEYALNAVNSQGRPALGIKARNGVVIATEKKVASPLVEEHSIRKVELITSEIGCCFAGMP 80 ADFRVILKKSRKIAQVYYNTYREQIPVCELVREIATVMQEFTQSGGVRPFGISLLVAGFDSTRGPQLFQVDPSGAYFGWK 160 ASAIGKDMQNAKSFLEKRYNPDVEIEDALHTALLTLKECFEGAMNEDNIEVGIVGEDKNFTILSPQEIKDYLGEVE 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70408 17 TFSPSGK|LV 0.084 . Chro.70408 33 AVNSQGR|PA 0.095 . Chro.70408 39 RPALGIK|AR 0.066 . Chro.70408 41 ALGIKAR|NG 0.098 . Chro.70408 50 VVIATEK|KV 0.063 . Chro.70408 51 VIATEKK|VA 0.109 . Chro.70408 63 VEEHSIR|KV 0.128 . Chro.70408 64 EEHSIRK|VE 0.059 . Chro.70408 84 GMPADFR|VI 0.074 . Chro.70408 88 DFRVILK|KS 0.061 . Chro.70408 89 FRVILKK|SR 0.159 . Chro.70408 91 VILKKSR|KI 0.091 . Chro.70408 92 ILKKSRK|IA 0.107 . Chro.70408 102 VYYNTYR|EQ 0.081 . Chro.70408 112 PVCELVR|EI 0.086 . Chro.70408 128 TQSGGVR|PF 0.146 . Chro.70408 143 AGFDSTR|GP 0.074 . Chro.70408 160 GAYFGWK|AS 0.076 . Chro.70408 166 KASAIGK|DM 0.076 . Chro.70408 172 KDMQNAK|SF 0.086 . Chro.70408 177 AKSFLEK|RY 0.077 . Chro.70408 178 KSFLEKR|YN 0.242 . Chro.70408 197 TALLTLK|EC 0.061 . Chro.70408 218 GIVGEDK|NF 0.061 . Chro.70408 229 LSPQEIK|DY 0.065 . ____________________________^_________________

  • Fasta :-

    >Chro.70408 ATGGACGCTGACTACTCATTTTCGCTCACAACATTCAGCCCTTCTGGAAAACTTGTTCAG ATAGAATATGCGCTTAATGCAGTTAACTCTCAAGGGCGTCCTGCATTGGGAATAAAAGCG AGAAATGGAGTTGTAATTGCTACCGAAAAGAAAGTTGCGAGCCCGTTGGTTGAGGAACAT TCAATTAGAAAGGTCGAATTAATTACTAGTGAGATAGGCTGTTGCTTTGCAGGTATGCCT GCTGATTTCAGAGTGATTCTGAAAAAGAGTCGAAAAATTGCCCAGGTTTACTACAATACG TATCGTGAGCAAATTCCAGTATGTGAACTAGTTCGAGAAATCGCAACTGTTATGCAAGAA TTTACTCAGTCAGGCGGCGTAAGACCATTTGGAATTTCATTATTAGTAGCAGGTTTCGAT TCAACTAGAGGCCCCCAGCTATTTCAAGTAGATCCCTCTGGTGCCTATTTCGGATGGAAG GCATCTGCAATCGGAAAAGACATGCAGAATGCAAAATCTTTCTTGGAGAAAAGATATAAC CCTGACGTAGAAATTGAGGATGCATTACATACCGCTCTCCTCACATTGAAAGAGTGTTTT GAAGGAGCAATGAATGAAGACAACATTGAAGTAGGTATAGTAGGGGAAGACAAAAACTTC ACTATTCTATCGCCACAGGAGATAAAGGACTATTTAGGTGAGGTTGAATAG
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  • Fasta :-

    MDADYSFSLTTFSPSGKLVQIEYALNAVNSQGRPALGIKARNGVVIATEKKVASPLVEEH SIRKVELITSEIGCCFAGMPADFRVILKKSRKIAQVYYNTYREQIPVCELVREIATVMQE FTQSGGVRPFGISLLVAGFDSTRGPQLFQVDPSGAYFGWKASAIGKDMQNAKSFLEKRYN PDVEIEDALHTALLTLKECFEGAMNEDNIEVGIVGEDKNFTILSPQEIKDYLGEVE

  • title: active site
  • coordinates: R33,E49,K51,K64,K166
No Results
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No Results

Chro.70408      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India