Chro.80156 | hypothetical protein

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  • Fasta :-

    >Chro.80156 MSIKLLDSYFQKIMYPISDNYSFIEINGKILHHNYSERYYISLMRNSKIKLVPAISNKYF NLKSKTDKVNTLNSFKSELSDDHFRVLILLEIKEKCNNFKLRIFPETFDEQDKITKLSSS NDLYNNSNCKFTTSICSYGNYFILIDFKEKQQDFVKGNFFKLIIYYQKI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/401 Sequence name : 401 Sequence length : 169 VALUES OF COMPUTED PARAMETERS Coef20 : 3.669 CoefTot : 0.243 ChDiff : 7 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.847 0.894 0.118 0.474 MesoH : -1.581 -0.275 -0.675 0.010 MuHd_075 : 16.431 6.479 3.378 2.516 MuHd_095 : 34.487 26.163 10.157 8.119 MuHd_100 : 27.978 24.743 9.384 7.761 MuHd_105 : 18.197 20.150 7.217 6.413 Hmax_075 : 17.967 15.050 1.819 5.763 Hmax_095 : 17.850 17.850 3.378 6.055 Hmax_100 : 19.800 21.200 3.980 6.960 Hmax_105 : 18.200 21.583 4.097 7.723 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6281 0.3719 DFMC : 0.8125 0.1875
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 169 Chro.80156 MSIKLLDSYFQKIMYPISDNYSFIEINGKILHHNYSERYYISLMRNSKIKLVPAISNKYFNLKSKTDKVNTLNSFKSELS 80 DDHFRVLILLEIKEKCNNFKLRIFPETFDEQDKITKLSSSNDLYNNSNCKFTTSICSYGNYFILIDFKEKQQDFVKGNFF 160 KLIIYYQKI 240 ................................................................................ 80 ................................................................................ 160 ......... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.80156 4 ---MSIK|LL 0.065 . Chro.80156 12 LDSYFQK|IM 0.075 . Chro.80156 29 FIEINGK|IL 0.060 . Chro.80156 38 HHNYSER|YY 0.113 . Chro.80156 45 YYISLMR|NS 0.076 . Chro.80156 48 SLMRNSK|IK 0.083 . Chro.80156 50 MRNSKIK|LV 0.095 . Chro.80156 58 VPAISNK|YF 0.068 . Chro.80156 63 NKYFNLK|SK 0.101 . Chro.80156 65 YFNLKSK|TD 0.062 . Chro.80156 68 LKSKTDK|VN 0.066 . Chro.80156 76 NTLNSFK|SE 0.061 . Chro.80156 85 LSDDHFR|VL 0.078 . Chro.80156 93 LILLEIK|EK 0.054 . Chro.80156 95 LLEIKEK|CN 0.069 . Chro.80156 100 EKCNNFK|LR 0.060 . Chro.80156 102 CNNFKLR|IF 0.135 . Chro.80156 113 TFDEQDK|IT 0.056 . Chro.80156 116 EQDKITK|LS 0.057 . Chro.80156 130 YNNSNCK|FT 0.072 . Chro.80156 148 FILIDFK|EK 0.057 . Chro.80156 150 LIDFKEK|QQ 0.066 . Chro.80156 156 KQQDFVK|GN 0.071 . Chro.80156 161 VKGNFFK|LI 0.074 . Chro.80156 168 LIIYYQK|I- 0.063 . ____________________________^_________________

  • Fasta :-

    >Chro.80156 ATGAGTATTAAGTTATTGGATTCTTATTTTCAAAAGATTATGTATCCTATTAGTGATAAT TATAGTTTTATAGAAATTAATGGTAAAATTCTACATCATAATTATAGTGAAAGGTATTAT ATTAGTTTAATGAGAAATTCAAAAATAAAATTGGTTCCTGCTATATCTAATAAATATTTT AATTTAAAAAGCAAAACAGATAAAGTAAATACTTTAAATTCATTTAAAAGTGAGTTATCT GATGATCATTTTAGAGTTTTAATATTATTAGAAATTAAAGAAAAATGTAATAATTTTAAG TTACGAATTTTTCCAGAAACGTTTGATGAACAAGACAAAATCACTAAATTGAGTTCCAGT AATGATTTATATAATAATAGTAATTGCAAATTTACTACATCCATTTGCAGCTATGGCAAT TACTTTATTTTGATTGATTTTAAAGAAAAACAACAAGATTTTGTAAAAGGTAACTTTTTT AAGCTTATTATTTATTATCAAAAAATTTAA
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  • Fasta :-

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Chro.80156      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India