EDI_120220 | FACT complex subunit SPT16, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EDI_120220OTHER0.9753870.0015480.023064
No Results

  • Fasta :-

    >EDI_120220 MKSASQLSCLLLKKRFVPKMKDILETEDQVSHKDIVEYIKNGVKDEKILKEVPNAEQSTV DAQVLSGTFTHTWPPVTSEGCLKDTIMFVYIKVQIEGETAIVARTYGVDVSKEIKHTYNQ LLRLEQTLASKYKSGIKVDTKVIEVAGLSQQVEIIKGEEILKEGSVIMIRVWSGQLMICD TCYIGSKGVINLTKFVGSNSSSVFFSFKDEEEPAEVLSKFRDKKQQEDEDELKEYEQQRK ETMKEEHRPKVETLKKEKIKAICYNSQKEMPSKNALYINSDVKKYAILLPINGKLVPFHV AYIKNITTREGFFRINFNVPRETEEGTVYVKELSFHVRDSDRISRIENDWKEMKKKWNEE EKIRNIRGMKEEKLVLRKESVPILRSVCINPVLKGKRTEGILEAHMNGFRFVSSGGNVEL MYDNIQHAFFQNGDTETVILLHFHMDPPVIIQNRPISDIQFYNEIMDISLNIDRGDRYYS EAEEAREEEREKRIRAKYNHLYAEFLTKVKEKDIPVSFEVPFRELKFGGTIKRNTATLVP TVKCLINISDAPYKVIELDTIEVVVFERLSRSLTLKNFDMVVIFKDHHKPVLQISSVSKT DLDHIKKWLNKCEIKSYETVQSLNWVNIMEAVNSDPVAFAEKGWSFLDADNTKSDSEESE EVFEPDEELEKELDAEDDLSTDLSSEEESSSSSEEEDDDGESWSDLEREAIKDDLVKDRE EHEMIGRAQMMKQRQRVQQRRPSQQRSTTIQNFFKKTSTTPTTSSSNNSRLQPIKINKAF VPTKKPSNLGGIKRPFSSNYAGTKKP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_120220.fa Sequence name : EDI_120220 Sequence length : 806 VALUES OF COMPUTED PARAMETERS Coef20 : 4.483 CoefTot : 0.127 ChDiff : -13 ZoneTo : 21 KR : 6 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.865 1.318 0.063 0.578 MesoH : -0.448 0.471 -0.318 0.239 MuHd_075 : 28.497 18.423 7.159 6.895 MuHd_095 : 21.786 12.034 7.002 3.665 MuHd_100 : 11.329 5.068 3.715 1.854 MuHd_105 : 18.098 12.672 4.579 4.794 Hmax_075 : 17.850 20.533 3.381 6.323 Hmax_095 : 14.700 11.200 3.021 3.490 Hmax_100 : 4.300 9.300 0.005 2.840 Hmax_105 : 4.400 12.700 -0.258 3.640 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0989 0.9011 DFMC : 0.1327 0.8673 This protein is probably imported in chloroplast. f(Ser) = 0.1429 f(Arg) = 0.0476 CMi = 1.04530 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 806 EDI_120220 MKSASQLSCLLLKKRFVPKMKDILETEDQVSHKDIVEYIKNGVKDEKILKEVPNAEQSTVDAQVLSGTFTHTWPPVTSEG 80 CLKDTIMFVYIKVQIEGETAIVARTYGVDVSKEIKHTYNQLLRLEQTLASKYKSGIKVDTKVIEVAGLSQQVEIIKGEEI 160 LKEGSVIMIRVWSGQLMICDTCYIGSKGVINLTKFVGSNSSSVFFSFKDEEEPAEVLSKFRDKKQQEDEDELKEYEQQRK 240 ETMKEEHRPKVETLKKEKIKAICYNSQKEMPSKNALYINSDVKKYAILLPINGKLVPFHVAYIKNITTREGFFRINFNVP 320 RETEEGTVYVKELSFHVRDSDRISRIENDWKEMKKKWNEEEKIRNIRGMKEEKLVLRKESVPILRSVCINPVLKGKRTEG 400 ILEAHMNGFRFVSSGGNVELMYDNIQHAFFQNGDTETVILLHFHMDPPVIIQNRPISDIQFYNEIMDISLNIDRGDRYYS 480 EAEEAREEEREKRIRAKYNHLYAEFLTKVKEKDIPVSFEVPFRELKFGGTIKRNTATLVPTVKCLINISDAPYKVIELDT 560 IEVVVFERLSRSLTLKNFDMVVIFKDHHKPVLQISSVSKTDLDHIKKWLNKCEIKSYETVQSLNWVNIMEAVNSDPVAFA 640 EKGWSFLDADNTKSDSEESEEVFEPDEELEKELDAEDDLSTDLSSEEESSSSSEEEDDDGESWSDLEREAIKDDLVKDRE 720 EHEMIGRAQMMKQRQRVQQRRPSQQRSTTIQNFFKKTSTTPTTSSSNNSRLQPIKINKAFVPTKKPSNLGGIKRPFSSNY 800 AGTKKP 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ...... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_120220 2 -----MK|SA 0.104 . EDI_120220 13 LSCLLLK|KR 0.054 . EDI_120220 14 SCLLLKK|RF 0.077 . EDI_120220 15 CLLLKKR|FV 0.259 . EDI_120220 19 KKRFVPK|MK 0.090 . EDI_120220 21 RFVPKMK|DI 0.102 . EDI_120220 33 EDQVSHK|DI 0.089 . EDI_120220 40 DIVEYIK|NG 0.057 . EDI_120220 44 YIKNGVK|DE 0.056 . EDI_120220 47 NGVKDEK|IL 0.067 . EDI_120220 50 KDEKILK|EV 0.074 . EDI_120220 83 TSEGCLK|DT 0.072 . EDI_120220 92 IMFVYIK|VQ 0.064 . EDI_120220 104 ETAIVAR|TY 0.118 . EDI_120220 112 YGVDVSK|EI 0.065 . EDI_120220 115 DVSKEIK|HT 0.074 . EDI_120220 123 TYNQLLR|LE 0.069 . EDI_120220 131 EQTLASK|YK 0.062 . EDI_120220 133 TLASKYK|SG 0.111 . EDI_120220 137 KYKSGIK|VD 0.059 . EDI_120220 141 GIKVDTK|VI 0.073 . EDI_120220 156 QQVEIIK|GE 0.065 . EDI_120220 162 KGEEILK|EG 0.060 . EDI_120220 170 GSVIMIR|VW 0.107 . EDI_120220 187 TCYIGSK|GV 0.073 . EDI_120220 194 GVINLTK|FV 0.094 . EDI_120220 208 SVFFSFK|DE 0.069 . EDI_120220 219 PAEVLSK|FR 0.070 . EDI_120220 221 EVLSKFR|DK 0.128 . EDI_120220 223 LSKFRDK|KQ 0.068 . EDI_120220 224 SKFRDKK|QQ 0.350 . EDI_120220 233 EDEDELK|EY 0.069 . EDI_120220 239 KEYEQQR|KE 0.103 . EDI_120220 240 EYEQQRK|ET 0.099 . EDI_120220 244 QRKETMK|EE 0.067 . EDI_120220 248 TMKEEHR|PK 0.076 . EDI_120220 250 KEEHRPK|VE 0.057 . EDI_120220 255 PKVETLK|KE 0.056 . EDI_120220 256 KVETLKK|EK 0.095 . EDI_120220 258 ETLKKEK|IK 0.059 . EDI_120220 260 LKKEKIK|AI 0.075 . EDI_120220 268 ICYNSQK|EM 0.057 . EDI_120220 273 QKEMPSK|NA 0.072 . EDI_120220 283 YINSDVK|KY 0.063 . EDI_120220 284 INSDVKK|YA 0.155 . EDI_120220 294 LLPINGK|LV 0.063 . EDI_120220 304 FHVAYIK|NI 0.066 . EDI_120220 309 IKNITTR|EG 0.092 . EDI_120220 314 TREGFFR|IN 0.129 . EDI_120220 321 INFNVPR|ET 0.131 . EDI_120220 331 EGTVYVK|EL 0.060 . EDI_120220 338 ELSFHVR|DS 0.196 . EDI_120220 342 HVRDSDR|IS 0.099 . EDI_120220 345 DSDRISR|IE 0.171 . EDI_120220 351 RIENDWK|EM 0.061 . EDI_120220 354 NDWKEMK|KK 0.065 . EDI_120220 355 DWKEMKK|KW 0.106 . EDI_120220 356 WKEMKKK|WN 0.131 . EDI_120220 362 KWNEEEK|IR 0.066 . EDI_120220 364 NEEEKIR|NI 0.091 . EDI_120220 367 EKIRNIR|GM 0.219 . EDI_120220 370 RNIRGMK|EE 0.109 . EDI_120220 373 RGMKEEK|LV 0.075 . EDI_120220 377 EEKLVLR|KE 0.074 . EDI_120220 378 EKLVLRK|ES 0.085 . EDI_120220 385 ESVPILR|SV 0.166 . EDI_120220 394 CINPVLK|GK 0.070 . EDI_120220 396 NPVLKGK|RT 0.082 . EDI_120220 397 PVLKGKR|TE 0.162 . EDI_120220 410 AHMNGFR|FV 0.163 . EDI_120220 454 PVIIQNR|PI 0.138 . EDI_120220 474 ISLNIDR|GD 0.075 . EDI_120220 477 NIDRGDR|YY 0.262 . EDI_120220 486 SEAEEAR|EE 0.104 . EDI_120220 490 EAREEER|EK 0.074 . EDI_120220 492 REEEREK|RI 0.071 . EDI_120220 493 EEEREKR|IR 0.391 . EDI_120220 495 EREKRIR|AK 0.109 . EDI_120220 497 EKRIRAK|YN 0.081 . EDI_120220 508 YAEFLTK|VK 0.066 . EDI_120220 510 EFLTKVK|EK 0.054 . EDI_120220 512 LTKVKEK|DI 0.091 . EDI_120220 523 SFEVPFR|EL 0.102 . EDI_120220 526 VPFRELK|FG 0.157 . EDI_120220 532 KFGGTIK|RN 0.064 . EDI_120220 533 FGGTIKR|NT 0.172 . EDI_120220 543 TLVPTVK|CL 0.065 . EDI_120220 554 ISDAPYK|VI 0.063 . EDI_120220 568 EVVVFER|LS 0.068 . EDI_120220 571 VFERLSR|SL 0.289 . EDI_120220 576 SRSLTLK|NF 0.081 . EDI_120220 585 DMVVIFK|DH 0.071 . EDI_120220 589 IFKDHHK|PV 0.077 . EDI_120220 599 QISSVSK|TD 0.068 . EDI_120220 606 TDLDHIK|KW 0.062 . EDI_120220 607 DLDHIKK|WL 0.097 . EDI_120220 611 IKKWLNK|CE 0.067 . EDI_120220 615 LNKCEIK|SY 0.101 . EDI_120220 642 PVAFAEK|GW 0.063 . EDI_120220 653 LDADNTK|SD 0.081 . EDI_120220 671 PDEELEK|EL 0.062 . EDI_120220 708 SWSDLER|EA 0.098 . EDI_120220 712 LEREAIK|DD 0.069 . EDI_120220 717 IKDDLVK|DR 0.077 . EDI_120220 719 DDLVKDR|EE 0.090 . EDI_120220 727 EHEMIGR|AQ 0.087 . EDI_120220 732 GRAQMMK|QR 0.073 . EDI_120220 734 AQMMKQR|QR 0.100 . EDI_120220 736 MMKQRQR|VQ 0.080 . EDI_120220 740 RQRVQQR|RP 0.142 . EDI_120220 741 QRVQQRR|PS 0.163 . EDI_120220 746 RRPSQQR|ST 0.193 . EDI_120220 755 TIQNFFK|KT 0.085 . EDI_120220 756 IQNFFKK|TS 0.120 . EDI_120220 770 SSSNNSR|LQ 0.100 . EDI_120220 775 SRLQPIK|IN 0.072 . EDI_120220 778 QPIKINK|AF 0.062 . EDI_120220 784 KAFVPTK|KP 0.068 . EDI_120220 785 AFVPTKK|PS 0.085 . EDI_120220 793 SNLGGIK|RP 0.057 . EDI_120220 794 NLGGIKR|PF 0.183 . EDI_120220 804 SNYAGTK|KP 0.063 . EDI_120220 805 NYAGTKK|P- 0.098 . ____________________________^_________________

  • Fasta :-

    >EDI_120220 ATGAAATCAGCCTCTCAACTTTCATGTCTCCTTCTCAAAAAACGATTTGTTCCTAAAATG AAAGACATATTAGAAACAGAGGATCAAGTGTCACACAAAGATATTGTAGAGTATATTAAA AATGGAGTAAAAGATGAAAAAATATTAAAAGAAGTGCCAAATGCTGAACAAAGTACTGTT GATGCACAAGTACTATCAGGTACTTTTACTCACACATGGCCTCCAGTCACTTCAGAAGGA TGTTTAAAAGATACTATCATGTTTGTTTATATAAAAGTACAAATTGAAGGAGAAACTGCT ATTGTTGCAAGAACATATGGGGTTGATGTCAGCAAAGAAATAAAACACACGTACAATCAA TTATTAAGATTAGAACAGACGTTAGCAAGTAAATATAAATCAGGAATAAAAGTTGACACT AAAGTAATTGAAGTAGCAGGGTTAAGTCAGCAAGTCGAGATTATTAAAGGAGAAGAAATA TTAAAAGAAGGAAGTGTTATAATGATTCGAGTTTGGAGTGGTCAATTAATGATTTGTGAT ACATGTTATATTGGTAGCAAAGGAGTTATTAATTTAACTAAATTTGTTGGTAGTAATAGT TCTAGTGTATTCTTCTCATTTAAAGATGAAGAAGAACCAGCAGAAGTATTATCTAAATTC AGAGATAAGAAACAACAAGAAGACGAAGATGAGTTAAAAGAATATGAACAACAAAGAAAA GAAACTATGAAAGAAGAACATAGACCAAAAGTAGAAACATTAAAAAAAGAAAAAATTAAA GCAATATGTTATAATAGTCAAAAAGAAATGCCTTCAAAAAATGCATTATACATTAATTCT GATGTAAAAAAATATGCTATTTTATTACCGATTAATGGCAAATTAGTTCCATTTCATGTT GCATATATTAAAAATATTACTACAAGAGAAGGATTTTTCCGTATTAATTTTAATGTTCCT AGAGAGACTGAAGAAGGAACAGTTTATGTAAAAGAATTATCGTTTCATGTAAGAGATTCA GATAGAATTTCAAGAATAGAAAATGACTGGAAAGAAATGAAAAAAAAGTGGAATGAAGAA GAGAAGATTAGGAATATTAGAGGAATGAAAGAAGAGAAATTGGTGTTAAGAAAAGAAAGT GTTCCAATACTTAGATCAGTTTGTATTAATCCAGTGTTAAAAGGAAAAAGAACTGAAGGT ATTCTTGAAGCACACATGAATGGATTTAGATTTGTTTCATCAGGTGGAAATGTAGAACTA ATGTATGATAATATTCAACACGCCTTTTTCCAAAACGGTGATACAGAAACAGTTATATTA TTACATTTTCATATGGACCCACCAGTTATTATTCAAAACAGGCCTATATCAGACATTCAA TTTTATAATGAAATTATGGATATTTCACTTAATATTGATCGTGGAGATAGGTATTATAGC GAAGCAGAAGAAGCAAGAGAAGAAGAAAGAGAAAAAAGAATTCGTGCAAAATATAATCAT TTATATGCTGAATTCTTAACAAAAGTAAAAGAAAAAGATATTCCTGTTAGTTTTGAAGTT CCTTTCAGAGAATTAAAGTTTGGAGGAACAATCAAAAGAAATACAGCCACTTTAGTTCCA ACTGTTAAATGTCTTATTAATATTTCTGATGCACCGTATAAGGTTATTGAATTAGATACA ATAGAAGTTGTGGTATTTGAAAGATTATCAAGAAGCCTTACATTAAAAAATTTTGATATG GTTGTAATTTTTAAAGACCATCACAAACCAGTATTACAAATTAGTTCAGTTTCAAAAACT GATTTAGACCATATCAAAAAATGGTTAAATAAATGTGAAATCAAAAGTTATGAAACAGTC CAGAGTTTAAATTGGGTAAATATTATGGAAGCGGTTAATTCAGATCCAGTAGCTTTTGCT GAGAAAGGTTGGTCATTCTTAGATGCAGACAATACAAAATCTGATAGTGAAGAATCAGAA GAAGTCTTTGAACCTGATGAAGAGTTAGAAAAAGAATTAGATGCAGAGGATGACCTTTCT ACTGATCTTTCAAGTGAAGAGGAATCAAGCTCAAGCAGTGAAGAAGAGGATGATGATGGA GAAAGTTGGTCTGATCTAGAAAGAGAAGCTATTAAAGACGATCTTGTCAAAGACAGAGAA GAACATGAGATGATAGGTAGAGCTCAAATGATGAAACAACGTCAAAGAGTTCAACAAAGA AGACCATCACAACAACGAAGCACTACAATACAAAATTTCTTCAAGAAAACATCAACAACT CCAACAACATCCTCTTCTAATAATTCTAGATTACAACCGATTAAAATTAATAAAGCATTT GTTCCTACAAAGAAGCCAAGTAACTTAGGAGGGATAAAACGTCCATTCTCAAGTAATTAT GCAGGAACGAAGAAACCTTAA
  • Download Fasta

  • Fasta :-

    MKSASQLSCLLLKKRFVPKMKDILETEDQVSHKDIVEYIKNGVKDEKILKEVPNAEQSTV DAQVLSGTFTHTWPPVTSEGCLKDTIMFVYIKVQIEGETAIVARTYGVDVSKEIKHTYNQ LLRLEQTLASKYKSGIKVDTKVIEVAGLSQQVEIIKGEEILKEGSVIMIRVWSGQLMICD TCYIGSKGVINLTKFVGSNSSSVFFSFKDEEEPAEVLSKFRDKKQQEDEDELKEYEQQRK ETMKEEHRPKVETLKKEKIKAICYNSQKEMPSKNALYINSDVKKYAILLPINGKLVPFHV AYIKNITTREGFFRINFNVPRETEEGTVYVKELSFHVRDSDRISRIENDWKEMKKKWNEE EKIRNIRGMKEEKLVLRKESVPILRSVCINPVLKGKRTEGILEAHMNGFRFVSSGGNVEL MYDNIQHAFFQNGDTETVILLHFHMDPPVIIQNRPISDIQFYNEIMDISLNIDRGDRYYS EAEEAREEEREKRIRAKYNHLYAEFLTKVKEKDIPVSFEVPFRELKFGGTIKRNTATLVP TVKCLINISDAPYKVIELDTIEVVVFERLSRSLTLKNFDMVVIFKDHHKPVLQISSVSKT DLDHIKKWLNKCEIKSYETVQSLNWVNIMEAVNSDPVAFAEKGWSFLDADNTKSDSEESE EVFEPDEELEKELDAEDDLSTDLSSEEESSSSSEEEDDDGESWSDLEREAIKDDLVKDRE EHEMIGRAQMMKQRQRVQQRRPSQQRSTTIQNFFKKTSTTPTTSSSNNSRLQPIKINKAF VPTKKPSNLGGIKRPFSSNYAGTKKP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_120220266 SICYNSQKEM0.99unspEDI_120220266 SICYNSQKEM0.99unspEDI_120220266 SICYNSQKEM0.99unspEDI_120220340 SHVRDSDRIS0.996unspEDI_120220344 SSDRISRIEN0.998unspEDI_120220480 SDRYYSEAEE0.992unspEDI_120220598 SISSVSKTDL0.995unspEDI_120220656 STKSDSEESE0.996unspEDI_120220659 SDSEESEEVF0.991unspEDI_120220684 SSTDLSSEEE0.993unspEDI_120220685 STDLSSEEES0.997unspEDI_120220691 SEESSSSSEE0.996unspEDI_120220692 SESSSSSEEE0.998unspEDI_120220693 SSSSSSEEED0.998unspEDI_120220702 SDDGESWSDL0.997unspEDI_120220743 SQRRPSQQRS0.997unspEDI_12022031 SEDQVSHKDI0.998unspEDI_120220206 SSVFFSFKDE0.997unsp

EDI_120220      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India