EDI_123560 | microsomal signal peptidase 23 kD subunit, putative

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  • Fasta :-

    >EDI_123560 MYHTFERMYNIIYYAFQWLGIAVFFLYLTSLILYVPPITSVSHNTTSSIKAYRKSSFSDF TIDLDVDFTQSFNWNTKMIFVWVKASFIDEKIPHNTATVWDTMIRKKERAHLQLTNERIE YPLVSVHNNLLGKEVNLTVEWMVIPWSGATTVEHGNSTTFVLPTEFSK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_123560.fa Sequence name : EDI_123560 Sequence length : 168 VALUES OF COMPUTED PARAMETERS Coef20 : 3.704 CoefTot : -1.016 ChDiff : -1 ZoneTo : 58 KR : 4 DE : 1 CleavSite : 55 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.312 0.400 0.841 MesoH : 0.089 0.489 -0.271 0.312 MuHd_075 : 24.720 14.311 6.668 4.146 MuHd_095 : 36.031 28.291 10.933 7.011 MuHd_100 : 41.063 31.700 12.199 8.694 MuHd_105 : 39.823 30.037 11.154 9.337 Hmax_075 : 8.925 22.500 0.639 1.668 Hmax_095 : 20.100 18.600 3.312 5.941 Hmax_100 : 20.100 18.600 3.312 6.420 Hmax_105 : 14.100 18.400 2.717 7.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8654 0.1346 DFMC : 0.7665 0.2335
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 168 EDI_123560 MYHTFERMYNIIYYAFQWLGIAVFFLYLTSLILYVPPITSVSHNTTSSIKAYRKSSFSDFTIDLDVDFTQSFNWNTKMIF 80 VWVKASFIDEKIPHNTATVWDTMIRKKERAHLQLTNERIEYPLVSVHNNLLGKEVNLTVEWMVIPWSGATTVEHGNSTTF 160 VLPTEFSK 240 ................................................................................ 80 ................................................................................ 160 ........ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_123560 7 MYHTFER|MY 0.100 . EDI_123560 50 NTTSSIK|AY 0.060 . EDI_123560 53 SSIKAYR|KS 0.114 . EDI_123560 54 SIKAYRK|SS 0.104 . EDI_123560 77 SFNWNTK|MI 0.077 . EDI_123560 84 MIFVWVK|AS 0.071 . EDI_123560 91 ASFIDEK|IP 0.058 . EDI_123560 105 VWDTMIR|KK 0.082 . EDI_123560 106 WDTMIRK|KE 0.074 . EDI_123560 107 DTMIRKK|ER 0.086 . EDI_123560 109 MIRKKER|AH 0.100 . EDI_123560 118 LQLTNER|IE 0.071 . EDI_123560 133 HNNLLGK|EV 0.078 . EDI_123560 168 LPTEFSK|-- 0.066 . ____________________________^_________________

  • Fasta :-

    >EDI_123560 ATGTATCATACTTTTGAACGTATGTATAATATTATTTATTATGCCTTTCAATGGCTCGGT ATAGCAGTTTTCTTCTTATACTTAACATCATTAATATTATATGTTCCTCCTATAACTTCA GTCTCACATAATACAACGAGTAGTATTAAAGCATATAGAAAGAGCTCTTTCTCTGATTTT ACAATTGATTTAGATGTTGACTTTACACAATCATTCAATTGGAATACAAAAATGATTTTT GTTTGGGTCAAAGCATCCTTTATAGATGAAAAAATTCCACATAACACAGCAACTGTTTGG GATACTATGATCAGAAAGAAAGAAAGGGCTCATTTACAATTAACAAACGAAAGAATTGAA TACCCCTTAGTCAGCGTCCATAATAATTTACTTGGAAAAGAAGTTAATTTAACAGTTGAA TGGATGGTTATCCCATGGAGTGGTGCTACTACTGTTGAACATGGAAATTCTACTACATTC GTACTTCCTACTGAATTTTCTAAATAA
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  • Fasta :-

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IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EDI_123560T1640.6040.177EDI_123560T1590.5770.044EDI_123560T1580.5670.030EDI_123560S1670.5040.034
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EDI_123560T1640.6040.177EDI_123560T1590.5770.044EDI_123560T1580.5670.030EDI_123560S1670.5040.034
IDSitePeptideScoreMethod
EDI_12356056 SYRKSSFSDF0.997unsp

EDI_123560      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India