EDI_163010 | proteasome subunit beta type-4 precursor, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_163010OTHER0.9989770.0008850.000138
No Results

  • Fasta :-

    >EDI_163010 MNKLIDVPIQQPTGVVLGTASVIGIKYDNGILIAADTLGSYGSMALFKDLERIIKLGKYT LIGGSGEYSDFIELNETLQKKVNGDECCEGKENGFKPSELYSYAQRILYEHRCDQKPLFV TLIVGGVKKDEIFLGQTDMYGTSFTENYVASGIGAHMAMPLLRKEWKDHMSREEAEHLIE RCMKILYLNHCWAGSQYLLGVVDSEGSDIIGPIAIDTTGKWDIIA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_163010.fa Sequence name : EDI_163010 Sequence length : 225 VALUES OF COMPUTED PARAMETERS Coef20 : 3.426 CoefTot : -1.824 ChDiff : -9 ZoneTo : 27 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.235 1.329 0.146 0.571 MesoH : -0.496 0.413 -0.311 0.278 MuHd_075 : 19.076 9.329 5.493 3.911 MuHd_095 : 28.347 19.995 8.062 5.799 MuHd_100 : 24.801 15.342 6.796 5.054 MuHd_105 : 21.402 14.215 5.307 4.257 Hmax_075 : 13.600 14.300 3.269 5.550 Hmax_095 : 14.600 15.700 2.520 5.880 Hmax_100 : 14.400 16.100 2.618 5.880 Hmax_105 : 9.500 19.300 1.102 5.063 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9657 0.0343 DFMC : 0.9669 0.0331
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 225 EDI_163010 MNKLIDVPIQQPTGVVLGTASVIGIKYDNGILIAADTLGSYGSMALFKDLERIIKLGKYTLIGGSGEYSDFIELNETLQK 80 KVNGDECCEGKENGFKPSELYSYAQRILYEHRCDQKPLFVTLIVGGVKKDEIFLGQTDMYGTSFTENYVASGIGAHMAMP 160 LLRKEWKDHMSREEAEHLIERCMKILYLNHCWAGSQYLLGVVDSEGSDIIGPIAIDTTGKWDIIA 240 ................................................................................ 80 ................................................................................ 160 ................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_163010 3 ----MNK|LI 0.066 . EDI_163010 26 ASVIGIK|YD 0.065 . EDI_163010 48 GSMALFK|DL 0.109 . EDI_163010 52 LFKDLER|II 0.075 . EDI_163010 55 DLERIIK|LG 0.085 . EDI_163010 58 RIIKLGK|YT 0.074 . EDI_163010 80 LNETLQK|KV 0.073 . EDI_163010 81 NETLQKK|VN 0.100 . EDI_163010 91 DECCEGK|EN 0.067 . EDI_163010 96 GKENGFK|PS 0.061 . EDI_163010 106 LYSYAQR|IL 0.107 . EDI_163010 112 RILYEHR|CD 0.080 . EDI_163010 116 EHRCDQK|PL 0.067 . EDI_163010 128 LIVGGVK|KD 0.063 . EDI_163010 129 IVGGVKK|DE 0.114 . EDI_163010 163 MAMPLLR|KE 0.087 . EDI_163010 164 AMPLLRK|EW 0.074 . EDI_163010 167 LLRKEWK|DH 0.083 . EDI_163010 172 WKDHMSR|EE 0.073 . EDI_163010 181 AEHLIER|CM 0.073 . EDI_163010 184 LIERCMK|IL 0.122 . EDI_163010 220 AIDTTGK|WD 0.064 . ____________________________^_________________

  • Fasta :-

    >EDI_163010 ATGAATAAATTAATTGATGTTCCTATTCAACAACCAACTGGAGTTGTGTTAGGTACAGCT TCTGTTATTGGTATTAAGTATGATAATGGAATTCTTATTGCAGCAGATACACTTGGATCA TATGGATCTATGGCATTATTCAAAGATTTAGAACGAATTATAAAATTAGGGAAATATACA TTAATTGGTGGTTCAGGTGAATATTCTGATTTCATTGAATTAAATGAAACATTACAAAAG AAAGTAAATGGTGATGAATGTTGTGAAGGTAAAGAAAACGGATTTAAACCAAGTGAATTA TATAGTTATGCCCAACGTATTTTATATGAACATAGATGTGATCAAAAACCATTATTTGTT ACATTGATTGTTGGAGGAGTTAAAAAAGATGAAATTTTCCTTGGACAAACTGATATGTAT GGTACATCATTTACAGAAAATTATGTTGCTAGTGGTATTGGTGCTCATATGGCTATGCCA CTATTACGAAAAGAATGGAAAGACCATATGTCTCGAGAAGAAGCTGAACATCTAATTGAG AGATGTATGAAAATTCTTTATTTAAATCATTGTTGGGCAGGAAGTCAATATCTTTTAGGT GTAGTAGATTCAGAAGGGTCAGATATTATTGGACCAATTGCTATAGATACAACAGGTAAA TGGGATATAATTGCTTAA
  • Download Fasta

  • Fasta :-

    MNKLIDVPIQQPTGVVLGTASVIGIKYDNGILIAADTLGSYGSMALFKDLERIIKLGKYT LIGGSGEYSDFIELNETLQKKVNGDECCEGKENGFKPSELYSYAQRILYEHRCDQKPLFV TLIVGGVKKDEIFLGQTDMYGTSFTENYVASGIGAHMAMPLLRKEWKDHMSREEAEHLIE RCMKILYLNHCWAGSQYLLGVVDSEGSDIIGPIAIDTTGKWDIIA

  • title: active site
  • coordinates: T19,D36,L38,R52,I153,H190,A193,G194
No Results
No Results
IDSitePeptideScoreMethod
EDI_163010171 SKDHMSREEA0.994unsp

EDI_163010      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India