EDI_235000 | proteasome subunit alpha type-5

_IDPredictionOTHERSPmTPCS_Position
EDI_235000OTHER0.9998700.0000790.000050
No Results

  • Fasta :-

    >EDI_235000 MFMTKNENDHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLML GSSIEKIIEIDDHIGAAVSGLTADARTLIDHARLEAQNHRFMYDEPINVEVVAQAISDLS LRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSI LHEKYNKSMTLREAEILALSTLKQVMEEKLTSKNVEVALVTVEKKKFEIMDTTFIENLIG EIKEELI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_235000.fa Sequence name : EDI_235000 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.385 CoefTot : -0.247 ChDiff : -9 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.400 1.076 -0.079 0.438 MesoH : -0.713 0.385 -0.391 0.208 MuHd_075 : 20.573 12.388 5.214 4.207 MuHd_095 : 15.137 10.451 5.535 3.132 MuHd_100 : 8.769 9.388 3.366 2.309 MuHd_105 : 4.361 8.828 1.534 2.055 Hmax_075 : 3.700 3.400 -1.236 2.320 Hmax_095 : 7.700 3.500 -0.746 2.410 Hmax_100 : -1.100 0.800 -3.069 1.850 Hmax_105 : -3.800 1.867 -4.483 1.073 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9594 0.0406 DFMC : 0.9455 0.0545
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 EDI_235000 MFMTKNENDHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSG 80 LTADARTLIDHARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSG 160 MFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEEKLTSKNVEVALVTVEKKKFEIMDTTFIENLIG 240 EIKEELI 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_235000 5 --MFMTK|NE 0.063 . EDI_235000 20 TFSSEGR|LF 0.112 . EDI_235000 32 YATEAMK|LG 0.066 . EDI_235000 43 VIGIQTK|EG 0.056 . EDI_235000 52 VVLAVEK|RI 0.062 . EDI_235000 53 VLAVEKR|IS 0.203 . EDI_235000 66 LGSSIEK|II 0.070 . EDI_235000 86 GLTADAR|TL 0.094 . EDI_235000 93 TLIDHAR|LE 0.103 . EDI_235000 100 LEAQNHR|FM 0.104 . EDI_235000 122 ISDLSLR|FG 0.094 . EDI_235000 128 RFGEGSR|KK 0.064 . EDI_235000 129 FGEGSRK|KK 0.071 . EDI_235000 130 GEGSRKK|KV 0.136 . EDI_235000 131 EGSRKKK|VM 0.362 . EDI_235000 135 KKKVMSR|PF 0.126 . EDI_235000 152 VDETGPR|LF 0.074 . EDI_235000 168 FIEFYAK|AT 0.079 . EDI_235000 184 QSILHEK|YN 0.068 . EDI_235000 187 LHEKYNK|SM 0.070 . EDI_235000 192 NKSMTLR|EA 0.139 . EDI_235000 203 LALSTLK|QV 0.071 . EDI_235000 209 KQVMEEK|LT 0.068 . EDI_235000 213 EEKLTSK|NV 0.087 . EDI_235000 224 ALVTVEK|KK 0.071 . EDI_235000 225 LVTVEKK|KF 0.103 . EDI_235000 226 VTVEKKK|FE 0.092 . EDI_235000 243 NLIGEIK|EE 0.056 . ____________________________^_________________

  • Fasta :-

    >EDI_235000 ATGTTTATGACTAAAAATGAAAACGATCATGGTGTTAATACCTTTTCATCTGAAGGAAGA TTATTCCAAGTCGAATATGCTACAGAAGCAATGAAATTAGGATCAACTGTTATTGGTATT CAAACAAAAGAAGGTGTTGTCCTTGCTGTAGAAAAACGAATTTCATCACCACTAATGCTT GGAAGTAGTATTGAAAAAATTATTGAGATTGACGATCATATTGGTGCAGCTGTTAGTGGA CTAACTGCTGATGCACGTACACTAATTGACCATGCTAGACTTGAAGCACAAAATCATAGA TTTATGTATGACGAACCAATAAATGTAGAAGTTGTTGCTCAAGCCATTTCAGATCTTTCT TTAAGATTTGGAGAAGGGTCAAGAAAGAAAAAAGTCATGAGTAGACCATTTGGTGTTGCA TTATTAATTGCAGGTGTTGATGAAACTGGTCCAAGACTTTTCCAAACTGATCCAAGTGGA ATGTTTATTGAATTTTATGCTAAAGCCACAGGAGCAGGAACAGAAGCTGCACAATCAATT TTACATGAAAAATATAATAAATCAATGACGTTAAGAGAAGCAGAAATACTTGCATTATCA ACATTAAAACAGGTAATGGAAGAAAAATTAACTTCCAAGAATGTAGAAGTAGCGTTAGTT ACAGTAGAAAAGAAGAAATTTGAAATTATGGATACAACATTTATTGAAAATTTAATTGGA GAAATCAAAGAAGAATTAATTTAA
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  • Fasta :-

    MFMTKNENDHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLML GSSIEKIIEIDDHIGAAVSGLTADARTLIDHARLEAQNHRFMYDEPINVEVVAQAISDLS LRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSI LHEKYNKSMTLREAEILALSTLKQVMEEKLTSKNVEVALVTVEKKKFEIMDTTFIENLIG EIKEELI

    No Results
  • title: active site
  • coordinates: S35,E51,R53,K66,A172
No Results
No Results
No Results

EDI_235000      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India