EDI_276880 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
EDI_276880OTHER0.9679920.0000490.031959
No Results

  • Fasta :-

    >EDI_276880 MSFIYRLFTRQNHKKTTKKLPNGVCGLYNLGNTCYMNCILQSLAHSKLFQNFCLTQDNLI RKDIAPGNETQYHNKINIALIALIQAMFCGEYAICTPRGVKEIMGEKNVMFKGNNQNDAS EFFLFLLDELDKEMRGTRSGIPISLPKDNLPILPIKMTEHQIGVPEIAKTKTPPKPLVLE IPEEIISNEKTEVHKGSPLIKKSEFVTIKIEEDKPLVRSATIQETVDSEESTEEEETNEQ KHRSSQEMVLTLSKNSENFLKIKDNITDSGYLQKENQIEISMNCNAFEKYIQNNQSVISE LFFGMLLKRTLCDCGNYSDSHNPFATLPIDIPLPKEVDGYFPVVFIGKEGLPKFFYIWTE IRPRMKEGARKLFAFEKIENPKLIYIQVNVRGELIKQLVPILVEKDQLKERLRVFGVKKP FNEEKVKRGWLLTFKGEEEDIEKFGKMEREERPTQNILNPNGISLEWCLNDFFKENMLGK GNEWKCSQCGKKVNARQKCIIEYPPNVLVIQLKRFRYTEHLSVVKDNSLIYFSLEIDLRR FGMLGKYRLNSVVNHRGTLNNGHYYSYCRCGSEWFVFNDDTVTSLNTNQIVTNNAFMLFY ERIN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_276880.fa Sequence name : EDI_276880 Sequence length : 604 VALUES OF COMPUTED PARAMETERS Coef20 : 4.322 CoefTot : -2.218 ChDiff : 4 ZoneTo : 56 KR : 7 DE : 0 CleavSite : 16 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.265 1.841 0.289 0.680 MesoH : -0.557 0.237 -0.356 0.230 MuHd_075 : 38.565 33.498 12.930 9.018 MuHd_095 : 41.139 22.150 10.885 8.314 MuHd_100 : 39.083 24.344 11.647 8.439 MuHd_105 : 42.743 28.626 12.980 9.202 Hmax_075 : 1.100 23.000 6.523 6.662 Hmax_095 : 2.300 4.300 2.147 2.275 Hmax_100 : 14.200 17.300 2.827 5.310 Hmax_105 : 15.400 16.917 3.112 5.635 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0694 0.9306 DFMC : 0.0850 0.9150 This protein is probably imported in mitochondria. f(Ser) = 0.0536 f(Arg) = 0.0357 CMi = 0.44643 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 604 EDI_276880 MSFIYRLFTRQNHKKTTKKLPNGVCGLYNLGNTCYMNCILQSLAHSKLFQNFCLTQDNLIRKDIAPGNETQYHNKINIAL 80 IALIQAMFCGEYAICTPRGVKEIMGEKNVMFKGNNQNDASEFFLFLLDELDKEMRGTRSGIPISLPKDNLPILPIKMTEH 160 QIGVPEIAKTKTPPKPLVLEIPEEIISNEKTEVHKGSPLIKKSEFVTIKIEEDKPLVRSATIQETVDSEESTEEEETNEQ 240 KHRSSQEMVLTLSKNSENFLKIKDNITDSGYLQKENQIEISMNCNAFEKYIQNNQSVISELFFGMLLKRTLCDCGNYSDS 320 HNPFATLPIDIPLPKEVDGYFPVVFIGKEGLPKFFYIWTEIRPRMKEGARKLFAFEKIENPKLIYIQVNVRGELIKQLVP 400 ILVEKDQLKERLRVFGVKKPFNEEKVKRGWLLTFKGEEEDIEKFGKMEREERPTQNILNPNGISLEWCLNDFFKENMLGK 480 GNEWKCSQCGKKVNARQKCIIEYPPNVLVIQLKRFRYTEHLSVVKDNSLIYFSLEIDLRRFGMLGKYRLNSVVNHRGTLN 560 NGHYYSYCRCGSEWFVFNDDTVTSLNTNQIVTNNAFMLFYERIN 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_276880 6 -MSFIYR|LF 0.098 . EDI_276880 10 IYRLFTR|QN 0.109 . EDI_276880 14 FTRQNHK|KT 0.070 . EDI_276880 15 TRQNHKK|TT 0.175 . EDI_276880 18 NHKKTTK|KL 0.068 . EDI_276880 19 HKKTTKK|LP 0.091 . EDI_276880 47 QSLAHSK|LF 0.061 . EDI_276880 61 TQDNLIR|KD 0.089 . EDI_276880 62 QDNLIRK|DI 0.137 . EDI_276880 75 ETQYHNK|IN 0.068 . EDI_276880 98 YAICTPR|GV 0.134 . EDI_276880 101 CTPRGVK|EI 0.105 . EDI_276880 107 KEIMGEK|NV 0.067 . EDI_276880 112 EKNVMFK|GN 0.081 . EDI_276880 132 LLDELDK|EM 0.056 . EDI_276880 135 ELDKEMR|GT 0.106 . EDI_276880 138 KEMRGTR|SG 0.282 . EDI_276880 147 IPISLPK|DN 0.080 . EDI_276880 156 LPILPIK|MT 0.083 . EDI_276880 169 GVPEIAK|TK 0.056 . EDI_276880 171 PEIAKTK|TP 0.057 . EDI_276880 175 KTKTPPK|PL 0.065 . EDI_276880 190 EIISNEK|TE 0.053 . EDI_276880 195 EKTEVHK|GS 0.065 . EDI_276880 201 KGSPLIK|KS 0.071 . EDI_276880 202 GSPLIKK|SE 0.143 . EDI_276880 209 SEFVTIK|IE 0.067 . EDI_276880 214 IKIEEDK|PL 0.063 . EDI_276880 218 EDKPLVR|SA 0.167 . EDI_276880 241 EETNEQK|HR 0.068 . EDI_276880 243 TNEQKHR|SS 0.193 . EDI_276880 254 MVLTLSK|NS 0.057 . EDI_276880 261 NSENFLK|IK 0.072 . EDI_276880 263 ENFLKIK|DN 0.071 . EDI_276880 274 DSGYLQK|EN 0.069 . EDI_276880 289 NCNAFEK|YI 0.075 . EDI_276880 308 FFGMLLK|RT 0.053 . EDI_276880 309 FGMLLKR|TL 0.171 . EDI_276880 335 IDIPLPK|EV 0.092 . EDI_276880 348 PVVFIGK|EG 0.058 . EDI_276880 353 GKEGLPK|FF 0.066 . EDI_276880 362 YIWTEIR|PR 0.077 . EDI_276880 364 WTEIRPR|MK 0.104 . EDI_276880 366 EIRPRMK|EG 0.067 . EDI_276880 370 RMKEGAR|KL 0.100 . EDI_276880 371 MKEGARK|LF 0.070 . EDI_276880 377 KLFAFEK|IE 0.066 . EDI_276880 382 EKIENPK|LI 0.069 . EDI_276880 391 YIQVNVR|GE 0.075 . EDI_276880 396 VRGELIK|QL 0.076 . EDI_276880 405 VPILVEK|DQ 0.067 . EDI_276880 409 VEKDQLK|ER 0.058 . EDI_276880 411 KDQLKER|LR 0.076 . EDI_276880 413 QLKERLR|VF 0.086 . EDI_276880 418 LRVFGVK|KP 0.069 . EDI_276880 419 RVFGVKK|PF 0.087 . EDI_276880 425 KPFNEEK|VK 0.073 . EDI_276880 427 FNEEKVK|RG 0.056 . EDI_276880 428 NEEKVKR|GW 0.204 . EDI_276880 435 GWLLTFK|GE 0.060 . EDI_276880 443 EEEDIEK|FG 0.056 . EDI_276880 446 DIEKFGK|ME 0.070 . EDI_276880 449 KFGKMER|EE 0.080 . EDI_276880 452 KMEREER|PT 0.217 . EDI_276880 474 CLNDFFK|EN 0.072 . EDI_276880 480 KENMLGK|GN 0.083 . EDI_276880 485 GKGNEWK|CS 0.069 . EDI_276880 491 KCSQCGK|KV 0.099 . EDI_276880 492 CSQCGKK|VN 0.090 . EDI_276880 496 GKKVNAR|QK 0.130 . EDI_276880 498 KVNARQK|CI 0.082 . EDI_276880 513 VLVIQLK|RF 0.066 . EDI_276880 514 LVIQLKR|FR 0.153 . EDI_276880 516 IQLKRFR|YT 0.091 . EDI_276880 525 EHLSVVK|DN 0.067 . EDI_276880 539 SLEIDLR|RF 0.082 . EDI_276880 540 LEIDLRR|FG 0.107 . EDI_276880 546 RFGMLGK|YR 0.060 . EDI_276880 548 GMLGKYR|LN 0.100 . EDI_276880 556 NSVVNHR|GT 0.098 . EDI_276880 569 HYYSYCR|CG 0.077 . EDI_276880 602 FMLFYER|IN 0.071 . ____________________________^_________________

  • Fasta :-

    >EDI_276880 ATGAGCTTTATTTATCGTCTCTTCACTCGTCAAAATCACAAAAAAACAACAAAAAAATTA CCGAATGGAGTGTGTGGATTATACAATTTAGGAAATACGTGTTATATGAATTGTATTTTA CAAAGTCTTGCTCATTCTAAACTATTTCAAAATTTCTGTTTAACTCAAGATAATCTCATA CGTAAAGATATTGCACCTGGTAATGAAACACAGTACCATAACAAAATTAATATTGCTCTT ATTGCTCTTATCCAAGCAATGTTTTGTGGTGAATATGCTATTTGTACACCTAGAGGAGTT AAAGAAATTATGGGAGAAAAAAATGTAATGTTTAAAGGAAATAACCAAAATGATGCATCC GAATTCTTTTTGTTTTTATTAGATGAGCTTGATAAGGAAATGAGAGGGACTCGGTCTGGA ATTCCTATTTCATTACCTAAAGACAATTTGCCTATTCTTCCCATTAAAATGACTGAACAC CAAATTGGAGTACCTGAGATTGCTAAAACAAAAACACCACCAAAACCTTTAGTATTAGAA ATTCCAGAAGAAATAATTTCAAATGAAAAGACAGAAGTTCATAAAGGGTCTCCCTTAATA AAAAAAAGTGAGTTTGTAACAATAAAAATAGAGGAAGATAAACCCCTTGTTCGTTCTGCC ACAATCCAAGAAACAGTTGATTCTGAAGAGAGCACTGAAGAAGAAGAGACAAATGAACAA AAACATAGATCATCACAAGAAATGGTATTAACATTATCAAAAAATTCAGAAAACTTTTTA AAGATAAAAGATAATATTACAGATAGTGGTTATCTTCAAAAAGAAAACCAAATTGAAATA TCAATGAATTGTAATGCCTTTGAAAAATATATCCAAAATAATCAAAGTGTTATTAGTGAA TTATTCTTTGGTATGTTATTAAAAAGAACTCTATGTGATTGTGGTAATTACTCTGATAGT CATAATCCTTTTGCAACATTACCGATTGATATCCCTTTACCTAAGGAAGTAGATGGATAT TTTCCCGTAGTTTTTATTGGTAAAGAAGGGCTTCCTAAGTTCTTTTATATTTGGACTGAA ATTCGACCAAGAATGAAAGAAGGAGCAAGAAAGTTATTTGCATTTGAAAAAATAGAAAAT CCTAAACTTATTTATATTCAGGTCAATGTTAGAGGAGAACTGATAAAGCAACTTGTTCCA ATATTAGTTGAGAAAGACCAGTTGAAAGAACGTTTGAGAGTTTTTGGTGTTAAAAAACCT TTTAATGAAGAAAAAGTAAAGAGGGGGTGGTTATTAACATTCAAAGGGGAAGAAGAAGAC ATTGAGAAATTTGGAAAAATGGAAAGAGAAGAAAGACCAACTCAAAATATATTAAATCCA AATGGGATATCATTAGAGTGGTGTTTGAATGACTTTTTTAAAGAAAATATGTTAGGAAAA GGAAATGAATGGAAGTGTAGTCAGTGTGGAAAAAAAGTTAATGCTAGACAAAAGTGTATT ATTGAATATCCTCCAAATGTTCTTGTTATTCAACTAAAACGATTTAGATACACAGAACAT TTAAGTGTAGTAAAAGATAATTCTCTTATTTATTTTTCACTTGAAATTGATCTTCGTCGT TTTGGAATGTTAGGGAAATACCGATTAAATTCTGTTGTGAATCACAGAGGGACACTGAAT AATGGGCATTATTATTCTTATTGTAGATGCGGTTCAGAATGGTTTGTTTTTAATGATGAC ACTGTAACAAGTCTTAATACTAACCAAATTGTGACAAATAATGCTTTTATGTTATTTTAC GAAAGAATTAATTAA
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  • Fasta :-

    MSFIYRLFTRQNHKKTTKKLPNGVCGLYNLGNTCYMNCILQSLAHSKLFQNFCLTQDNLI RKDIAPGNETQYHNKINIALIALIQAMFCGEYAICTPRGVKEIMGEKNVMFKGNNQNDAS EFFLFLLDELDKEMRGTRSGIPISLPKDNLPILPIKMTEHQIGVPEIAKTKTPPKPLVLE IPEEIISNEKTEVHKGSPLIKKSEFVTIKIEEDKPLVRSATIQETVDSEESTEEEETNEQ KHRSSQEMVLTLSKNSENFLKIKDNITDSGYLQKENQIEISMNCNAFEKYIQNNQSVISE LFFGMLLKRTLCDCGNYSDSHNPFATLPIDIPLPKEVDGYFPVVFIGKEGLPKFFYIWTE IRPRMKEGARKLFAFEKIENPKLIYIQVNVRGELIKQLVPILVEKDQLKERLRVFGVKKP FNEEKVKRGWLLTFKGEEEDIEKFGKMEREERPTQNILNPNGISLEWCLNDFFKENMLGK GNEWKCSQCGKKVNARQKCIIEYPPNVLVIQLKRFRYTEHLSVVKDNSLIYFSLEIDLRR FGMLGKYRLNSVVNHRGTLNNGHYYSYCRCGSEWFVFNDDTVTSLNTNQIVTNNAFMLFY ERIN

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_276880231 SDSEESTEEE0.997unspEDI_276880231 SDSEESTEEE0.997unspEDI_276880231 SDSEESTEEE0.997unspEDI_276880245 SKHRSSQEMV0.993unspEDI_276880551 SYRLNSVVNH0.992unspEDI_27688096 TYAICTPRGV0.991unspEDI_276880228 SETVDSEEST0.993unsp

EDI_276880      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India