EDI_278440 | proteasome subunit alpha type-4, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_278440OTHER0.9998480.0000290.000123
No Results

  • Fasta :-

    >EDI_278440 MARRYDSRTTMFSPEGRLYQVEYAMEAISHSSSAIGILATDGILLAAKKKRVARLVDRSK GADKMYELDEHIACAAAGITSDTNILVDYLRDVCQQHRFTYGEEIPVEMLVQRICDMKQS YTQYGGLRPYGVSFLYAGWDRYFGYQLYMCDPSGNYGGWKATAIGANYQAAESIMKTEYK DDITLEEAKKLAVKIFSKSVESSSMVPSKLEFGIFKLDNQNKPSFKVMKDREVSVLLKEC GIEQVEDRD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_278440.fa Sequence name : EDI_278440 Sequence length : 249 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : -2 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.171 1.453 0.202 0.556 MesoH : -0.815 0.155 -0.429 0.127 MuHd_075 : 24.761 7.986 3.788 6.693 MuHd_095 : 12.641 2.148 2.915 2.168 MuHd_100 : 17.052 7.474 3.659 4.307 MuHd_105 : 18.943 11.472 3.932 6.024 Hmax_075 : -3.850 -0.700 -3.539 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8943 0.1057 DFMC : 0.8310 0.1690
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 249 EDI_278440 MARRYDSRTTMFSPEGRLYQVEYAMEAISHSSSAIGILATDGILLAAKKKRVARLVDRSKGADKMYELDEHIACAAAGIT 80 SDTNILVDYLRDVCQQHRFTYGEEIPVEMLVQRICDMKQSYTQYGGLRPYGVSFLYAGWDRYFGYQLYMCDPSGNYGGWK 160 ATAIGANYQAAESIMKTEYKDDITLEEAKKLAVKIFSKSVESSSMVPSKLEFGIFKLDNQNKPSFKVMKDREVSVLLKEC 240 GIEQVEDRD 320 .....................................................P.......................... 80 ................................................................................ 160 ................................................................................ 240 ......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ EDI_278440 3 ----MAR|RY 0.097 . EDI_278440 4 ---MARR|YD 0.148 . EDI_278440 8 ARRYDSR|TT 0.108 . EDI_278440 17 MFSPEGR|LY 0.103 . EDI_278440 48 GILLAAK|KK 0.058 . EDI_278440 49 ILLAAKK|KR 0.073 . EDI_278440 50 LLAAKKK|RV 0.128 . EDI_278440 51 LAAKKKR|VA 0.310 . EDI_278440 54 KKKRVAR|LV 0.593 *ProP* EDI_278440 58 VARLVDR|SK 0.148 . EDI_278440 60 RLVDRSK|GA 0.075 . EDI_278440 64 RSKGADK|MY 0.071 . EDI_278440 91 ILVDYLR|DV 0.167 . EDI_278440 98 DVCQQHR|FT 0.100 . EDI_278440 113 VEMLVQR|IC 0.098 . EDI_278440 118 QRICDMK|QS 0.081 . EDI_278440 128 TQYGGLR|PY 0.102 . EDI_278440 141 LYAGWDR|YF 0.131 . EDI_278440 160 GNYGGWK|AT 0.072 . EDI_278440 176 AAESIMK|TE 0.057 . EDI_278440 180 IMKTEYK|DD 0.082 . EDI_278440 189 ITLEEAK|KL 0.062 . EDI_278440 190 TLEEAKK|LA 0.102 . EDI_278440 194 AKKLAVK|IF 0.071 . EDI_278440 198 AVKIFSK|SV 0.104 . EDI_278440 209 SSMVPSK|LE 0.075 . EDI_278440 216 LEFGIFK|LD 0.064 . EDI_278440 222 KLDNQNK|PS 0.074 . EDI_278440 226 QNKPSFK|VM 0.067 . EDI_278440 229 PSFKVMK|DR 0.084 . EDI_278440 231 FKVMKDR|EV 0.177 . EDI_278440 238 EVSVLLK|EC 0.070 . EDI_278440 248 IEQVEDR|D- 0.127 . ____________________________^_________________

  • Fasta :-

    >EDI_278440 ATGGCTAGAAGATATGATAGTAGAACTACTATGTTCTCCCCTGAAGGGAGACTGTATCAA GTAGAATATGCAATGGAAGCTATTAGTCATTCATCAAGTGCAATTGGTATTTTAGCCACT GATGGAATTTTACTTGCTGCTAAAAAGAAAAGAGTTGCACGATTAGTTGATAGGTCTAAA GGGGCAGATAAAATGTATGAATTAGATGAACACATTGCATGTGCTGCAGCAGGAATAACA TCAGATACAAATATATTAGTAGATTATTTAAGAGATGTATGTCAACAACATAGATTTACA TATGGAGAAGAAATACCAGTAGAAATGTTAGTACAACGAATTTGTGATATGAAACAAAGT TATACTCAATATGGTGGATTAAGACCATATGGAGTTTCATTCTTATATGCTGGATGGGAT AGATATTTTGGATATCAATTATATATGTGTGATCCAAGTGGAAATTATGGAGGATGGAAA GCTACTGCTATTGGAGCTAATTATCAAGCAGCTGAATCGATTATGAAAACAGAATATAAA GATGATATTACATTAGAAGAAGCAAAAAAATTAGCGGTTAAAATCTTTAGTAAAAGTGTA GAAAGTTCATCAATGGTACCATCTAAATTAGAATTTGGTATTTTTAAATTAGATAATCAA AATAAACCAAGTTTTAAAGTTATGAAAGATCGTGAAGTCTCTGTTTTATTAAAAGAATGT GGAATTGAACAAGTAGAAGACCGAGATTAA
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  • Fasta :-

    No Results
  • title: active site
  • coordinates: S32,K48,K50,K64,A166
No Results
No Results
IDSitePeptideScoreMethod
EDI_278440199 SIFSKSVESS0.993unsp

EDI_278440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India