EHI_015380 | immuno-dominant variable surface antigen

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EHI_015380OTHER0.7813070.1454470.073246
No Results

  • Fasta :-

    >EHI_015380 MLGSKSIIAVVAIASAIVTGVVVIVVVVTLSVVLTRSSVKDTNSIYVPDVITNDPQMTNE MDTLEVISSSKFSGTKPKEWTMKYTKYPYWRCGLTFTNEEKQNIVNENKEYMNSLLQLIN NGSLGRMPEKYGGDKQFEANGVNWEADRLEVRYGLFGRVFGQRAVAWAFPGEIVTIKFPK GMSYKGIQVGIGKCNHNPSDQWLNVNNWSNDRMPIDSIGFDLGLNTTQPYIINDTFKIGS PFGGMIYLRSDTTFTNSFYVTFSNVGRAPIINYNITTNEEWNSVLRNAPGNVAEIRTPGN RLVLTSRNIRSLEDAQYISDFWLKAISISNYAVTLENIPITLNFDQRVDAGAAVAYVGRW FTQNPSDWAAACVGKDGLINYGNWGPLHEMNHHMQGTYLKGGNWGISNPGEETNNVMTSI NYILYTNIAGHRNQGLSGWNYVSDGYSTIYKILKGENDQPHLRSYVNMAHAFGTDTLIAL VKSYYGLWYENNFESKYSIKRDSTSAFCLLAALVTKRDTRYLCSLFKYDIQSNVSEAIKN MNYPTYYPFFNLYAMSYNGNYYGRPYKIPYGRTRLNFTATTAIDPKATSVSYTIKSGLTK GKLERVEDNVYDYTPFFGIEENDTFVLNIDCVVNGEKVHIEQEGTFELDPHQVEYEVYKD VQTRDMAQALNIIQNKTANDTGRASFFGIGTYNDGSMQSMLVEKGKLIVPKSGYYTLFMK ADDLGRLLLNITGEYEQLLDVKTYLGGYSKTLNGSYATVKLEKDVGYPFILYNLNTGGQG FIRIGYCYHGTEESSVDVSKCSVSDIGSSMVLNEKVKTGAKEPEFQIPPIKYSRPTRFLT NAYRTIPKCLNGDDACSIKCLSLPLKHDDSSKCSNMFDDNYSTMYHSRWTGQGTTFPVNY TFEFSENVTFNNLYVHHRRPEDSWGYFEMFVKSPETGEMELLEKYKHPKSTTTELNFQKL VTTDRVQFIVYNNSNGGNYVNVVELSFNIKETFKNYTNSFGPKIKSTGFKKVTTPGASGG YLAVNEKEGEGSLCFKAKVTKFGLYGYRKTTSGKFRVTIDSQPGEVTSQSYFSDSERTLF YAHTFDETEANKVHNICMEVVEGTVNLDIIGSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_015380.fa Sequence name : EHI_015380 Sequence length : 1113 VALUES OF COMPUTED PARAMETERS Coef20 : 4.614 CoefTot : 1.011 ChDiff : -5 ZoneTo : 40 KR : 3 DE : 0 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.294 3.071 0.568 0.889 MesoH : 0.002 0.880 -0.176 0.317 MuHd_075 : 25.011 22.906 6.716 6.586 MuHd_095 : 23.280 15.299 5.871 4.516 MuHd_100 : 22.481 18.462 5.777 4.811 MuHd_105 : 18.255 18.245 5.687 5.370 Hmax_075 : 16.300 28.200 4.067 7.800 Hmax_095 : 15.662 27.825 3.827 5.836 Hmax_100 : 16.600 27.600 4.011 7.820 Hmax_105 : 15.100 23.450 4.782 7.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8506 0.1494 DFMC : 0.8763 0.1237
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 1113 EHI_015380 MLGSKSIIAVVAIASAIVTGVVVIVVVVTLSVVLTRSSVKDTNSIYVPDVITNDPQMTNEMDTLEVISSSKFSGTKPKEW 80 TMKYTKYPYWRCGLTFTNEEKQNIVNENKEYMNSLLQLINNGSLGRMPEKYGGDKQFEANGVNWEADRLEVRYGLFGRVF 160 GQRAVAWAFPGEIVTIKFPKGMSYKGIQVGIGKCNHNPSDQWLNVNNWSNDRMPIDSIGFDLGLNTTQPYIINDTFKIGS 240 PFGGMIYLRSDTTFTNSFYVTFSNVGRAPIINYNITTNEEWNSVLRNAPGNVAEIRTPGNRLVLTSRNIRSLEDAQYISD 320 FWLKAISISNYAVTLENIPITLNFDQRVDAGAAVAYVGRWFTQNPSDWAAACVGKDGLINYGNWGPLHEMNHHMQGTYLK 400 GGNWGISNPGEETNNVMTSINYILYTNIAGHRNQGLSGWNYVSDGYSTIYKILKGENDQPHLRSYVNMAHAFGTDTLIAL 480 VKSYYGLWYENNFESKYSIKRDSTSAFCLLAALVTKRDTRYLCSLFKYDIQSNVSEAIKNMNYPTYYPFFNLYAMSYNGN 560 YYGRPYKIPYGRTRLNFTATTAIDPKATSVSYTIKSGLTKGKLERVEDNVYDYTPFFGIEENDTFVLNIDCVVNGEKVHI 640 EQEGTFELDPHQVEYEVYKDVQTRDMAQALNIIQNKTANDTGRASFFGIGTYNDGSMQSMLVEKGKLIVPKSGYYTLFMK 720 ADDLGRLLLNITGEYEQLLDVKTYLGGYSKTLNGSYATVKLEKDVGYPFILYNLNTGGQGFIRIGYCYHGTEESSVDVSK 800 CSVSDIGSSMVLNEKVKTGAKEPEFQIPPIKYSRPTRFLTNAYRTIPKCLNGDDACSIKCLSLPLKHDDSSKCSNMFDDN 880 YSTMYHSRWTGQGTTFPVNYTFEFSENVTFNNLYVHHRRPEDSWGYFEMFVKSPETGEMELLEKYKHPKSTTTELNFQKL 960 VTTDRVQFIVYNNSNGGNYVNVVELSFNIKETFKNYTNSFGPKIKSTGFKKVTTPGASGGYLAVNEKEGEGSLCFKAKVT 1040 KFGLYGYRKTTSGKFRVTIDSQPGEVTSQSYFSDSERTLFYAHTFDETEANKVHNICMEVVEGTVNLDIIGSS 1120 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .....................................................................P.......... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ................................................................................ 960 ................................................................................ 1040 ......................................................................... 1120 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ EHI_015380 5 --MLGSK|SI 0.080 . EHI_015380 36 LSVVLTR|SS 0.128 . EHI_015380 40 LTRSSVK|DT 0.071 . EHI_015380 71 EVISSSK|FS 0.075 . EHI_015380 76 SKFSGTK|PK 0.066 . EHI_015380 78 FSGTKPK|EW 0.075 . EHI_015380 83 PKEWTMK|YT 0.068 . EHI_015380 86 WTMKYTK|YP 0.058 . EHI_015380 91 TKYPYWR|CG 0.096 . EHI_015380 101 TFTNEEK|QN 0.066 . EHI_015380 109 NIVNENK|EY 0.065 . EHI_015380 126 NNGSLGR|MP 0.101 . EHI_015380 130 LGRMPEK|YG 0.086 . EHI_015380 135 EKYGGDK|QF 0.068 . EHI_015380 148 VNWEADR|LE 0.067 . EHI_015380 152 ADRLEVR|YG 0.081 . EHI_015380 158 RYGLFGR|VF 0.097 . EHI_015380 163 GRVFGQR|AV 0.184 . EHI_015380 177 GEIVTIK|FP 0.061 . EHI_015380 180 VTIKFPK|GM 0.083 . EHI_015380 185 PKGMSYK|GI 0.086 . EHI_015380 193 IQVGIGK|CN 0.060 . EHI_015380 212 NNWSNDR|MP 0.080 . EHI_015380 237 IINDTFK|IG 0.084 . EHI_015380 249 GGMIYLR|SD 0.132 . EHI_015380 267 TFSNVGR|AP 0.106 . EHI_015380 286 EWNSVLR|NA 0.092 . EHI_015380 296 GNVAEIR|TP 0.098 . EHI_015380 301 IRTPGNR|LV 0.112 . EHI_015380 307 RLVLTSR|NI 0.091 . EHI_015380 310 LTSRNIR|SL 0.614 *ProP* EHI_015380 324 ISDFWLK|AI 0.074 . EHI_015380 347 TLNFDQR|VD 0.092 . EHI_015380 359 AVAYVGR|WF 0.113 . EHI_015380 375 AAACVGK|DG 0.069 . EHI_015380 400 MQGTYLK|GG 0.070 . EHI_015380 432 TNIAGHR|NQ 0.096 . EHI_015380 451 GYSTIYK|IL 0.074 . EHI_015380 454 TIYKILK|GE 0.073 . EHI_015380 463 NDQPHLR|SY 0.122 . EHI_015380 482 TLIALVK|SY 0.073 . EHI_015380 496 ENNFESK|YS 0.076 . EHI_015380 500 ESKYSIK|RD 0.069 . EHI_015380 501 SKYSIKR|DS 0.231 . EHI_015380 516 LAALVTK|RD 0.065 . EHI_015380 517 AALVTKR|DT 0.180 . EHI_015380 520 VTKRDTR|YL 0.216 . EHI_015380 527 YLCSLFK|YD 0.067 . EHI_015380 539 NVSEAIK|NM 0.056 . EHI_015380 564 NGNYYGR|PY 0.085 . EHI_015380 567 YYGRPYK|IP 0.092 . EHI_015380 572 YKIPYGR|TR 0.079 . EHI_015380 574 IPYGRTR|LN 0.112 . EHI_015380 586 TTAIDPK|AT 0.078 . EHI_015380 595 SVSYTIK|SG 0.092 . EHI_015380 600 IKSGLTK|GK 0.067 . EHI_015380 602 SGLTKGK|LE 0.064 . EHI_015380 605 TKGKLER|VE 0.092 . EHI_015380 637 CVVNGEK|VH 0.060 . EHI_015380 659 VEYEVYK|DV 0.095 . EHI_015380 664 YKDVQTR|DM 0.147 . EHI_015380 676 LNIIQNK|TA 0.077 . EHI_015380 683 TANDTGR|AS 0.161 . EHI_015380 704 QSMLVEK|GK 0.069 . EHI_015380 706 MLVEKGK|LI 0.073 . EHI_015380 711 GKLIVPK|SG 0.102 . EHI_015380 720 YYTLFMK|AD 0.060 . EHI_015380 726 KADDLGR|LL 0.073 . EHI_015380 742 EQLLDVK|TY 0.056 . EHI_015380 750 YLGGYSK|TL 0.062 . EHI_015380 760 GSYATVK|LE 0.064 . EHI_015380 763 ATVKLEK|DV 0.087 . EHI_015380 783 GGQGFIR|IG 0.093 . EHI_015380 800 SSVDVSK|CS 0.067 . EHI_015380 815 SMVLNEK|VK 0.056 . EHI_015380 817 VLNEKVK|TG 0.064 . EHI_015380 821 KVKTGAK|EP 0.061 . EHI_015380 831 FQIPPIK|YS 0.066 . EHI_015380 834 PPIKYSR|PT 0.086 . EHI_015380 837 KYSRPTR|FL 0.476 . EHI_015380 844 FLTNAYR|TI 0.089 . EHI_015380 848 AYRTIPK|CL 0.063 . EHI_015380 859 DDACSIK|CL 0.068 . EHI_015380 866 CLSLPLK|HD 0.070 . EHI_015380 872 KHDDSSK|CS 0.062 . EHI_015380 888 STMYHSR|WT 0.200 . EHI_015380 918 NLYVHHR|RP 0.101 . EHI_015380 919 LYVHHRR|PE 0.135 . EHI_015380 932 YFEMFVK|SP 0.097 . EHI_015380 944 EMELLEK|YK 0.063 . EHI_015380 946 ELLEKYK|HP 0.061 . EHI_015380 949 EKYKHPK|ST 0.126 . EHI_015380 959 TELNFQK|LV 0.081 . EHI_015380 965 KLVTTDR|VQ 0.079 . EHI_015380 990 ELSFNIK|ET 0.073 . EHI_015380 994 NIKETFK|NY 0.061 . EHI_015380 1003 TNSFGPK|IK 0.101 . EHI_015380 1005 SFGPKIK|ST 0.120 . EHI_015380 1010 IKSTGFK|KV 0.104 . EHI_015380 1011 KSTGFKK|VT 0.115 . EHI_015380 1027 YLAVNEK|EG 0.065 . EHI_015380 1036 EGSLCFK|AK 0.070 . EHI_015380 1038 SLCFKAK|VT 0.094 . EHI_015380 1041 FKAKVTK|FG 0.069 . EHI_015380 1048 FGLYGYR|KT 0.077 . EHI_015380 1049 GLYGYRK|TT 0.107 . EHI_015380 1054 RKTTSGK|FR 0.069 . EHI_015380 1056 TTSGKFR|VT 0.213 . EHI_015380 1077 YFSDSER|TL 0.094 . EHI_015380 1092 DETEANK|VH 0.054 . ____________________________^_________________

  • Fasta :-

    >EHI_015380 ATGTTAGGTTCTAAAAGCATTATTGCTGTTGTGGCTATAGCTTCTGCAATAGTCACAGGA GTAGTTGTTATAGTTGTTGTTGTTACACTTTCTGTGGTTTTAACAAGAAGTAGTGTTAAA GACACCAACTCTATTTATGTTCCTGATGTTATTACTAACGACCCACAAATGACAAATGAA ATGGATACATTAGAGGTTATTTCTTCTTCAAAATTTAGTGGAACAAAACCAAAAGAATGG ACTATGAAATATACAAAATATCCTTATTGGAGATGTGGACTTACATTTACTAATGAGGAA AAACAAAATATTGTTAATGAAAATAAGGAATATATGAACTCATTATTACAACTTATTAAT AATGGATCATTAGGAAGAATGCCTGAAAAATATGGTGGAGATAAACAATTTGAAGCTAAT GGAGTTAATTGGGAAGCTGATAGATTAGAAGTTAGATATGGTCTTTTCGGTAGAGTTTTT GGTCAAAGAGCTGTTGCATGGGCTTTTCCAGGAGAAATCGTTACAATTAAATTCCCTAAA GGAATGAGTTATAAGGGAATTCAGGTTGGTATTGGTAAGTGTAACCATAATCCTTCTGAT CAATGGTTAAATGTTAATAACTGGTCAAATGATAGAATGCCAATCGATTCAATTGGATTT GATTTAGGACTTAATACAACGCAACCATACATTATTAATGATACATTTAAAATAGGATCA CCATTTGGAGGTATGATTTATTTAAGATCTGATACAACATTTACAAATTCATTTTATGTC ACATTCAGTAATGTTGGAAGAGCTCCAATTATTAATTATAATATTACAACGAATGAAGAA TGGAATAGTGTTTTAAGAAATGCACCAGGAAATGTTGCAGAAATCAGAACACCAGGAAAT AGACTTGTACTTACTTCAAGAAATATTAGAAGTTTGGAAGATGCACAATATATTAGTGAT TTCTGGTTAAAAGCAATTAGTATTTCTAATTATGCTGTTACACTTGAAAATATTCCAATT ACATTAAACTTTGATCAAAGAGTTGATGCAGGAGCTGCTGTTGCATATGTAGGACGTTGG TTTACTCAAAACCCATCCGATTGGGCAGCTGCATGTGTTGGTAAAGATGGATTAATAAAT TATGGAAATTGGGGACCATTACATGAAATGAATCATCATATGCAAGGAACTTATTTAAAA GGAGGAAATTGGGGTATTAGTAATCCAGGAGAAGAAACTAATAATGTTATGACATCAATT AATTATATTTTGTATACAAATATTGCTGGACATAGAAATCAAGGACTTAGTGGTTGGAAT TATGTTTCTGATGGTTATTCTACAATTTATAAAATTCTTAAAGGTGAAAATGATCAACCT CATTTAAGGTCTTATGTTAATATGGCACATGCATTTGGAACAGACACTTTAATTGCTTTA GTTAAATCTTATTATGGATTATGGTATGAAAATAATTTTGAAAGTAAATATTCAATTAAA AGAGATTCTACCTCTGCTTTCTGTTTGTTAGCTGCATTAGTTACAAAAAGAGATACTAGA TACTTATGTTCTCTATTTAAATATGATATACAATCAAATGTTTCAGAAGCAATTAAAAAT ATGAATTATCCAACTTATTATCCATTCTTCAACCTCTATGCCATGAGTTATAATGGAAAT TACTATGGAAGACCCTATAAAATTCCATATGGAAGAACTAGATTGAATTTCACTGCAACT ACTGCTATAGATCCAAAAGCAACTAGTGTTAGTTATACTATTAAGTCTGGATTAACTAAA GGAAAATTAGAACGAGTTGAAGACAATGTTTATGACTATACACCATTCTTTGGAATAGAA GAAAATGATACATTTGTTTTAAATATTGATTGTGTTGTTAATGGAGAAAAAGTACATATC GAACAAGAAGGAACATTTGAATTAGATCCACATCAAGTAGAATATGAAGTTTATAAAGAT GTTCAAACAAGAGATATGGCACAAGCTCTTAATATTATTCAGAATAAAACTGCTAATGAT ACAGGAAGGGCTTCATTCTTTGGAATTGGAACATACAATGATGGATCAATGCAATCAATG TTAGTAGAAAAAGGTAAATTGATAGTTCCAAAATCTGGATATTATACATTGTTTATGAAA GCAGATGATTTAGGAAGATTGTTATTGAATATTACTGGAGAGTATGAACAATTATTAGAT GTTAAAACATATCTTGGAGGTTATTCAAAAACTCTTAATGGAAGTTATGCAACTGTAAAA TTGGAAAAAGATGTGGGATATCCATTTATTCTTTATAATTTGAATACTGGAGGACAAGGA TTTATTAGAATAGGATATTGTTATCATGGAACAGAAGAATCAAGTGTTGATGTTTCTAAA TGCAGTGTATCAGATATTGGAAGCTCTATGGTTCTTAATGAAAAAGTTAAAACAGGAGCA AAAGAACCAGAATTCCAAATTCCACCAATTAAATACAGCAGACCAACACGTTTCTTAACT AATGCATATAGAACTATTCCAAAATGTTTGAATGGTGACGATGCTTGTTCTATTAAATGT CTCTCATTACCACTTAAACATGATGATTCAAGTAAATGTTCTAATATGTTTGATGATAAT TATTCTACTATGTATCATTCAAGATGGACTGGACAAGGAACTACTTTCCCAGTTAATTAT ACATTTGAATTCTCAGAAAATGTAACATTTAATAATCTTTATGTTCATCATAGAAGACCT GAAGATTCATGGGGATACTTTGAAATGTTTGTTAAATCTCCAGAAACAGGAGAAATGGAG TTATTAGAAAAATATAAGCATCCAAAGTCTACTACAACAGAACTTAATTTCCAAAAATTA GTTACAACTGATCGTGTCCAATTTATTGTCTATAATAATTCAAATGGTGGAAATTATGTC AATGTTGTAGAATTGTCTTTCAATATTAAGGAAACCTTTAAGAATTATACAAATTCATTT GGACCAAAGATTAAAAGTACTGGATTTAAGAAAGTTACTACACCAGGTGCTTCAGGAGGA TATCTTGCAGTAAATGAAAAGGAAGGAGAAGGATCACTTTGTTTCAAAGCTAAAGTCACT AAATTCGGTCTTTATGGATATAGAAAAACAACATCTGGAAAGTTTAGAGTTACAATTGAC TCACAACCAGGTGAAGTTACTAGCCAAAGTTATTTCTCTGACTCTGAACGAACTTTGTTC TATGCTCATACTTTTGATGAAACTGAAGCAAACAAAGTTCATAACATTTGTATGGAAGTT GTTGAAGGAACAGTTAATCTTGATATCATTGGTTCTTCTTAA
  • Download Fasta

  • Fasta :-

    MLGSKSIIAVVAIASAIVTGVVVIVVVVTLSVVLTRSSVKDTNSIYVPDVITNDPQMTNE MDTLEVISSSKFSGTKPKEWTMKYTKYPYWRCGLTFTNEEKQNIVNENKEYMNSLLQLIN NGSLGRMPEKYGGDKQFEANGVNWEADRLEVRYGLFGRVFGQRAVAWAFPGEIVTIKFPK GMSYKGIQVGIGKCNHNPSDQWLNVNNWSNDRMPIDSIGFDLGLNTTQPYIINDTFKIGS PFGGMIYLRSDTTFTNSFYVTFSNVGRAPIINYNITTNEEWNSVLRNAPGNVAEIRTPGN RLVLTSRNIRSLEDAQYISDFWLKAISISNYAVTLENIPITLNFDQRVDAGAAVAYVGRW FTQNPSDWAAACVGKDGLINYGNWGPLHEMNHHMQGTYLKGGNWGISNPGEETNNVMTSI NYILYTNIAGHRNQGLSGWNYVSDGYSTIYKILKGENDQPHLRSYVNMAHAFGTDTLIAL VKSYYGLWYENNFESKYSIKRDSTSAFCLLAALVTKRDTRYLCSLFKYDIQSNVSEAIKN MNYPTYYPFFNLYAMSYNGNYYGRPYKIPYGRTRLNFTATTAIDPKATSVSYTIKSGLTK GKLERVEDNVYDYTPFFGIEENDTFVLNIDCVVNGEKVHIEQEGTFELDPHQVEYEVYKD VQTRDMAQALNIIQNKTANDTGRASFFGIGTYNDGSMQSMLVEKGKLIVPKSGYYTLFMK ADDLGRLLLNITGEYEQLLDVKTYLGGYSKTLNGSYATVKLEKDVGYPFILYNLNTGGQG FIRIGYCYHGTEESSVDVSKCSVSDIGSSMVLNEKVKTGAKEPEFQIPPIKYSRPTRFLT NAYRTIPKCLNGDDACSIKCLSLPLKHDDSSKCSNMFDDNYSTMYHSRWTGQGTTFPVNY TFEFSENVTFNNLYVHHRRPEDSWGYFEMFVKSPETGEMELLEKYKHPKSTTTELNFQKL VTTDRVQFIVYNNSNGGNYVNVVELSFNIKETFKNYTNSFGPKIKSTGFKKVTTPGASGG YLAVNEKEGEGSLCFKAKVTKFGLYGYRKTTSGKFRVTIDSQPGEVTSQSYFSDSERTLF YAHTFDETEANKVHNICMEVVEGTVNLDIIGSS

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EHI_015380503 SIKRDSTSAF0.996unspEHI_015380503 SIKRDSTSAF0.996unspEHI_015380503 SIKRDSTSAF0.996unspEHI_015380933 SMFVKSPETG0.992unspEHI_0153801073 SQSYFSDSER0.992unspEHI_01538038 SLTRSSVKDT0.998unspEHI_015380498 SESKYSIKRD0.994unsp

EHI_015380      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India