EHI_031250 | signal peptidase, putative

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  • Fasta :-

    >EHI_031250 MPSFYQLVSSVGLFVTPILPLVLGAQRAEKAVREKLTESMDLKNAMSMPVIGSIVLFGLY VVIKFISADYLQYLLTLYFMFIGAVGINEFFSFIFEKYASPEKFFITIPFINSKIETSKS EILGTGVGFIFSLLWVITRHWILNNLLAFCLTVVAIGELTAPSFKIAAIMLIALFCYDIF WVFGSEVMLTVATHVDGPIKFIFPKDGNFIFTDQVSLLGLGDIAIPGIFIALMKRVDTSF NNKSQYFMVSMISYFIGLLITFIVMHTFACGQPALLYLVPALLIGTISYALSRKELKQVY DYHDPTDEKEESSEAEESSEAEESSEEDDDEKEESSEEED
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_031250.fa Sequence name : EHI_031250 Sequence length : 340 VALUES OF COMPUTED PARAMETERS Coef20 : 3.906 CoefTot : -0.363 ChDiff : -21 ZoneTo : 28 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.424 2.424 0.421 0.839 MesoH : 1.107 1.500 0.074 0.595 MuHd_075 : 15.886 14.698 4.234 4.094 MuHd_095 : 15.843 23.492 5.388 5.413 MuHd_100 : 19.944 27.074 6.140 6.311 MuHd_105 : 20.404 25.186 5.983 6.949 Hmax_075 : 17.800 22.500 3.694 6.820 Hmax_095 : 14.875 23.363 4.102 8.050 Hmax_100 : 19.000 28.900 5.101 8.200 Hmax_105 : 16.300 24.850 4.184 7.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7999 0.2001 DFMC : 0.8316 0.1684
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 340 EHI_031250 MPSFYQLVSSVGLFVTPILPLVLGAQRAEKAVREKLTESMDLKNAMSMPVIGSIVLFGLYVVIKFISADYLQYLLTLYFM 80 FIGAVGINEFFSFIFEKYASPEKFFITIPFINSKIETSKSEILGTGVGFIFSLLWVITRHWILNNLLAFCLTVVAIGELT 160 APSFKIAAIMLIALFCYDIFWVFGSEVMLTVATHVDGPIKFIFPKDGNFIFTDQVSLLGLGDIAIPGIFIALMKRVDTSF 240 NNKSQYFMVSMISYFIGLLITFIVMHTFACGQPALLYLVPALLIGTISYALSRKELKQVYDYHDPTDEKEESSEAEESSE 320 AEESSEEDDDEKEESSEEED 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_031250 27 LVLGAQR|AE 0.070 . EHI_031250 30 GAQRAEK|AV 0.256 . EHI_031250 33 RAEKAVR|EK 0.085 . EHI_031250 35 EKAVREK|LT 0.067 . EHI_031250 43 TESMDLK|NA 0.074 . EHI_031250 64 GLYVVIK|FI 0.088 . EHI_031250 97 FSFIFEK|YA 0.092 . EHI_031250 103 KYASPEK|FF 0.064 . EHI_031250 114 IPFINSK|IE 0.059 . EHI_031250 119 SKIETSK|SE 0.079 . EHI_031250 139 LLWVITR|HW 0.080 . EHI_031250 165 LTAPSFK|IA 0.071 . EHI_031250 200 HVDGPIK|FI 0.075 . EHI_031250 205 IKFIFPK|DG 0.080 . EHI_031250 234 IFIALMK|RV 0.084 . EHI_031250 235 FIALMKR|VD 0.105 . EHI_031250 243 DTSFNNK|SQ 0.080 . EHI_031250 293 ISYALSR|KE 0.075 . EHI_031250 294 SYALSRK|EL 0.104 . EHI_031250 297 LSRKELK|QV 0.087 . EHI_031250 309 HDPTDEK|EE 0.056 . EHI_031250 332 EEDDDEK|EE 0.060 . ____________________________^_________________

  • Fasta :-

    >EHI_031250 ATGCCATCGTTTTATCAACTCGTTTCTAGTGTTGGATTATTTGTTACTCCAATTTTACCT TTAGTTCTTGGAGCACAAAGAGCTGAAAAAGCAGTTAGAGAGAAATTAACAGAGTCTATG GATTTAAAGAATGCAATGTCAATGCCAGTAATAGGAAGTATTGTATTATTTGGATTGTAC GTTGTTATTAAATTCATTTCAGCAGATTATCTACAATATTTATTAACACTTTATTTCATG TTTATTGGTGCAGTTGGAATAAATGAATTTTTTTCATTTATATTTGAGAAATATGCATCT CCAGAGAAGTTTTTTATCACAATCCCATTTATTAATAGTAAAATTGAAACATCTAAATCA GAAATTCTTGGGACAGGAGTTGGATTTATATTTTCATTATTATGGGTTATTACTCGTCAT TGGATCTTGAATAACTTACTTGCATTTTGTTTAACAGTTGTTGCAATTGGAGAACTTACA GCCCCATCATTTAAAATCGCAGCAATCATGTTAATTGCACTCTTTTGCTATGATATCTTT TGGGTGTTTGGAAGTGAAGTTATGTTGACAGTAGCAACTCATGTTGACGGACCAATCAAA TTTATCTTCCCTAAAGATGGGAACTTCATCTTCACAGATCAAGTTTCACTTCTTGGACTT GGTGATATTGCAATTCCAGGTATTTTTATTGCATTAATGAAAAGAGTAGATACTTCTTTT AATAATAAGAGTCAATATTTCATGGTTTCTATGATTTCATATTTCATTGGGTTATTAATT ACATTCATCGTTATGCACACATTTGCATGTGGACAACCAGCATTATTATATCTTGTCCCA GCATTATTAATTGGAACTATTTCCTATGCATTATCTAGAAAAGAATTAAAACAGGTATAT GACTATCACGACCCTACTGATGAGAAAGAAGAAAGTTCAGAAGCAGAAGAAAGTTCAGAA GCAGAAGAAAGTTCAGAAGAAGATGATGATGAGAAAGAAGAAAGTTCAGAAGAAGAAGAC TAAGAGTAAACGTAGCTGAAATGATTTATTCTTTTT
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  • Fasta :-

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IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EHI_031250S3360.5450.091EHI_031250S3250.5430.067EHI_031250S3350.5380.029EHI_031250S3240.5270.027EHI_031250S3190.5110.037EHI_031250S3180.5040.051
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EHI_031250S3360.5450.091EHI_031250S3250.5430.067EHI_031250S3350.5380.029EHI_031250S3240.5270.027EHI_031250S3190.5110.037EHI_031250S3180.5040.051
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EHI_031250312 SEKEESSEAE0.994unspEHI_031250312 SEKEESSEAE0.994unspEHI_031250312 SEKEESSEAE0.994unspEHI_031250324 SEAEESSEED0.997unspEHI_031250325 SAEESSEEDD0.997unspEHI_031250335 SEKEESSEEE0.998unspEHI_031250336 SKEESSEEED0.997unspEHI_031250100 SEKYASPEKF0.995unspEHI_031250292 SSYALSRKEL0.996unsp

EHI_031250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India