EHI_090000 | proteasome subunit alpha type 7, putative

_IDPredictionOTHERSPmTPCS_Position
EHI_090000OTHER0.9998690.0000630.000068
No Results

  • Fasta :-

    >EHI_090000 MSYDRAITVFSPNGHLFQVEYALEAVSKGLVSVGVKGKDCIIFGVEKKSIAKLQDPRTVR KIQQIDQHIYTTFAGLTADARVLINKARLEAQNYRMSMEDAPTVEYVTKAVANYQQKYTQ QGGSRPFGISTLIGGFDPDGTPRLYQTDPAGTWTEWKAHVVGRNSKTVDEYLVKGYEDNM EIDKAVVVVVRALLEVVESKNNIDVAVFTRDYKLTMLNDTKLAEIVQQIERDKQVEAEEK KPILQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_090000.fa Sequence name : EHI_090000 Sequence length : 245 VALUES OF COMPUTED PARAMETERS Coef20 : 3.684 CoefTot : -0.804 ChDiff : -1 ZoneTo : 19 KR : 1 DE : 1 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.276 1.541 -0.005 0.449 MesoH : -1.121 0.126 -0.534 0.106 MuHd_075 : 26.535 14.664 6.289 4.673 MuHd_095 : 14.047 8.752 3.120 2.893 MuHd_100 : 18.730 13.569 5.364 4.882 MuHd_105 : 22.329 17.870 6.443 6.340 Hmax_075 : 13.650 10.150 1.599 4.130 Hmax_095 : 7.787 5.162 -0.059 3.614 Hmax_100 : 10.200 11.100 0.358 4.380 Hmax_105 : 8.900 10.600 0.091 4.700 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9905 0.0095 DFMC : 0.9912 0.0088
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 245 EHI_090000 MSYDRAITVFSPNGHLFQVEYALEAVSKGLVSVGVKGKDCIIFGVEKKSIAKLQDPRTVRKIQQIDQHIYTTFAGLTADA 80 RVLINKARLEAQNYRMSMEDAPTVEYVTKAVANYQQKYTQQGGSRPFGISTLIGGFDPDGTPRLYQTDPAGTWTEWKAHV 160 VGRNSKTVDEYLVKGYEDNMEIDKAVVVVVRALLEVVESKNNIDVAVFTRDYKLTMLNDTKLAEIVQQIERDKQVEAEEK 240 KPILQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_090000 5 --MSYDR|AI 0.081 . EHI_090000 28 ALEAVSK|GL 0.071 . EHI_090000 36 LVSVGVK|GK 0.079 . EHI_090000 38 SVGVKGK|DC 0.081 . EHI_090000 47 IIFGVEK|KS 0.064 . EHI_090000 48 IFGVEKK|SI 0.179 . EHI_090000 52 EKKSIAK|LQ 0.059 . EHI_090000 57 AKLQDPR|TV 0.114 . EHI_090000 60 QDPRTVR|KI 0.260 . EHI_090000 61 DPRTVRK|IQ 0.089 . EHI_090000 81 GLTADAR|VL 0.078 . EHI_090000 86 ARVLINK|AR 0.063 . EHI_090000 88 VLINKAR|LE 0.100 . EHI_090000 95 LEAQNYR|MS 0.096 . EHI_090000 109 TVEYVTK|AV 0.087 . EHI_090000 117 VANYQQK|YT 0.091 . EHI_090000 125 TQQGGSR|PF 0.104 . EHI_090000 143 DPDGTPR|LY 0.082 . EHI_090000 157 GTWTEWK|AH 0.066 . EHI_090000 163 KAHVVGR|NS 0.142 . EHI_090000 166 VVGRNSK|TV 0.190 . EHI_090000 174 VDEYLVK|GY 0.067 . EHI_090000 184 DNMEIDK|AV 0.072 . EHI_090000 191 AVVVVVR|AL 0.095 . EHI_090000 200 LEVVESK|NN 0.065 . EHI_090000 210 DVAVFTR|DY 0.095 . EHI_090000 213 VFTRDYK|LT 0.085 . EHI_090000 221 TMLNDTK|LA 0.074 . EHI_090000 231 IVQQIER|DK 0.084 . EHI_090000 233 QQIERDK|QV 0.095 . EHI_090000 240 QVEAEEK|KP 0.056 . EHI_090000 241 VEAEEKK|PI 0.101 . ____________________________^_________________

  • Fasta :-

    >EHI_090000 ATGTCATACGATAGAGCTATTACTGTATTTTCACCAAATGGTCATTTATTCCAAGTAGAA TATGCACTTGAGGCTGTAAGTAAAGGATTAGTTTCTGTTGGTGTTAAAGGAAAAGATTGT ATTATTTTTGGTGTTGAAAAGAAATCAATTGCCAAATTACAAGACCCAAGAACAGTGAGA AAAATTCAACAAATTGATCAACACATTTATACTACATTTGCTGGACTAACTGCAGATGCA CGAGTATTAATTAATAAAGCAAGACTTGAAGCACAAAATTATCGTATGTCAATGGAAGAT GCTCCAACTGTTGAATATGTTACAAAAGCAGTTGCTAATTATCAACAAAAATATACTCAG CAAGGTGGAAGTCGTCCATTTGGTATTTCTACTCTTATTGGAGGGTTTGATCCTGATGGA ACTCCAAGATTATATCAAACTGATCCAGCTGGAACATGGACAGAATGGAAAGCTCATGTT GTTGGAAGAAATTCAAAAACAGTTGATGAATATTTAGTAAAAGGATATGAAGATAATATG GAAATAGATAAAGCAGTTGTAGTTGTTGTTCGAGCTCTTTTAGAAGTTGTTGAAAGTAAA AATAATATTGATGTTGCTGTTTTTACACGTGATTATAAATTAACAATGTTAAATGATACT AAATTAGCAGAAATTGTTCAACAAATAGAAAGAGATAAGCAAGTTGAAGCAGAAGAAAAG AAACCAATTCTCCAATAA
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  • Fasta :-

    MSYDRAITVFSPNGHLFQVEYALEAVSKGLVSVGVKGKDCIIFGVEKKSIAKLQDPRTVR KIQQIDQHIYTTFAGLTADARVLINKARLEAQNYRMSMEDAPTVEYVTKAVANYQQKYTQ QGGSRPFGISTLIGGFDPDGTPRLYQTDPAGTWTEWKAHVVGRNSKTVDEYLVKGYEDNM EIDKAVVVVVRALLEVVESKNNIDVAVFTRDYKLTMLNDTKLAEIVQQIERDKQVEAEEK KPILQ

  • title: active site
  • coordinates: L30,E46,K48,K61,R163
No Results
No Results
IDSitePeptideScoreMethod
EHI_09000097 SNYRMSMEDA0.998unsp

EHI_090000      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India